mRNA_H-akashiwo_Contig846.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig846.1.1
Unique NamemRNA_H-akashiwo_Contig846.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A7S3XT50_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XT50_HETAK)

HSP 1 Score: 183 bits (465), Expect = 4.810e-56
Identity = 83/122 (68.03%), Postives = 101/122 (82.79%), Query Frame = 1
Query:    1 KTRHRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTA 366
            +T+HRIIL  D+P+  PP RMS EQ D AR+TIQEMI++GV+R SKSPYASCTV+VRKPDG WRCCIDFRRLNA  + DV PLPR +D+L+ LS  K FT VDM+KGYWQVP+ ++D+EKTA
Sbjct:   50 RTKHRIILQHDRPLHQPPRRMSPEQLDVARETIQEMIDLGVVRKSKSPYASCTVIVRKPDGAWRCCIDFRRLNAITKRDVHPLPRTEDILRYLSQAKYFTSVDMYKGYWQVPMEKEDIEKTA 171          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A7S3XLC6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLC6_HETAK)

HSP 1 Score: 154 bits (390), Expect = 3.810e-45
Identity = 71/77 (92.21%), Postives = 72/77 (93.51%), Query Frame = 1
Query:  196 CIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNA 426
            CIDFRRLNA  + DVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTP  LYEWLFMPMGLTNA
Sbjct:    1 CIDFRRLNAVTKRDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPFGLYEWLFMPMGLTNA 77          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A6G5AC45_RHIMP (RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5AC45_RHIMP)

HSP 1 Score: 145 bits (365), Expect = 7.160e-37
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 KTRHRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNA 426
            + RHRI   T +PI   P R+S  +R    + ++EM++ G+I+ S SP+A+  +LV+K DGTWR C+D+RRLN+  + DV PLPR+DD L  L     F+ +D+  GYWQ+P+H  D EKTAF TP  LYE+  MP GL NA
Sbjct:  270 RIRHRINTQTAQPIRQKPYRVSPSERKIIDNQVREMLQKGIIQESSSPWAAPVILVKKKDGTWRFCVDYRRLNSITKKDVYPLPRIDDALDCLHSASYFSSIDLRSGYWQIPMHPADKEKTAFITPDGLYEFNVMPFGLCNA 411          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A7J7K478_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K478_BUGNE)

HSP 1 Score: 143 bits (361), Expect = 1.630e-36
Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   10 HRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNATSYL 438
            H ++L T +P+ S P  +    R+  ++ I +M+++GVIRPS SPYAS TV+V+KPDG+ R CID+R+LN     D  P+ + DDL QKLS +K FT +D+ KGYWQ+P+ ++D+ KTAF TP   YE++ MP G+ N+ + L
Sbjct:  384 HSVLLTTAEPVKSKPYGLPYRVRETLKEDINDMLKMGVIRPSTSPYASPTVIVKKPDGSNRICIDYRKLNKISVFDPEPMIKADDLFQKLSGDKYFTKLDLSKGYWQIPVKKEDIHKTAFVTPDGHYEFIKMPFGMVNSGATL 526          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A7J7JPA8_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JPA8_BUGNE)

HSP 1 Score: 142 bits (357), Expect = 5.250e-36
Identity = 67/143 (46.85%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   10 HRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNATSYL 438
            H I L TD+P+ S P  +    R+  +  I++M+++GVIRPS SPYAS TV+V+KPDG+ R CID+R+LN     D  P+ + DD+ +KLS +K FT +D+ KGYWQ+P+ ++D+ KTAF TP   YE++ MP G+ N+ + L
Sbjct:  446 HSIELTTDEPVKSKPYGLPYRVRETLKADIEDMLKMGVIRPSTSPYASPTVIVKKPDGSNRICIDYRKLNRVSVFDPEPMVKTDDVFRKLSKDKYFTKLDLSKGYWQIPVKKEDIPKTAFVTPDGHYEFIKMPFGMVNSGATL 588          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: L7LV55_RHIPC (RNA-directed DNA polymerase n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7LV55_RHIPC)

HSP 1 Score: 142 bits (359), Expect = 5.370e-36
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 KTRHRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNA 426
            + RHRI   +  PI   P R+S  +R    + ++EM+  GVI+ S SP+A+  +LV+K DG+WR C+D+RRLN+  + DV PLPR+DD L  L     F+ VD+  GYWQ+P+H DD EKTAF TP  L+E+  MP GL NA
Sbjct:   76 RIRHRINTGSAHPIRQKPYRVSPTERKVISEQVEEMLRKGVIQESASPWAAPVILVKKKDGSWRFCVDYRRLNSITKKDVYPLPRIDDALDCLHSASYFSSVDLRSGYWQIPMHTDDKEKTAFVTPDGLFEFNVMPFGLCNA 217          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: L7ML08_RHIPC (RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7ML08_RHIPC)

HSP 1 Score: 142 bits (358), Expect = 7.430e-36
Identity = 68/142 (47.89%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 KTRHRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNA 426
            + +HRI   T  PI   P  +S  +R    D +QEM++ GVI  S SP+A+  +LV+K DG+WR C+D+RRLNA  + DV PLPR+DD++  L     F+ VD+  GYWQ+P+H  D EKTAF TP  LY++  MP GL NA
Sbjct:  144 RAQHRIDTSTAHPIRQKPYLVSSSERKVIADQVQEMLQKGVIEESCSPWAAPVILVKKKDGSWRFCVDYRRLNALTKKDVYPLPRIDDVIDCLHSASYFSSVDLRSGYWQIPMHPADKEKTAFVTPDGLYQFNVMPFGLCNA 285          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A8J9ZJW5_BRALA (RTL1 protein n=2 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZJW5_BRALA)

HSP 1 Score: 142 bits (358), Expect = 7.560e-36
Identity = 69/141 (48.94%), Postives = 91/141 (64.54%), Query Frame = 1
Query:   10 HRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNATS 432
            HRI+ H D+PI   P RM   ++ + +  + EM++ GV+ PS+SP+A+  VLVRK +GT R C+D+R+LN     D  PLPR DD +  LS    FT +DM  GYWQVP+H DD EKTAF T   LY++  M  GLTNA S
Sbjct:  122 HRILTHDDRPIKQRPHRMPIHRQAEVQRQVAEMLDAGVVEPSQSPWAAPVVLVRKKNGTHRFCVDYRKLNHATVKDAHPLPRTDDTIDALSGSAYFTTLDMTTGYWQVPVHPDDREKTAFTTGRGLYQFTVMAFGLTNAPS 262          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A6G5A909_RHIMP (Putative tick transposon n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A909_RHIMP)

HSP 1 Score: 134 bits (338), Expect = 1.460e-35
Identity = 64/139 (46.04%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   10 HRIILHTDKPIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNA 426
            H I      PI   P R+S  +R    D + +M++ GVI+ S SP+A+  +LV+K D +WR C+D+RRLNA  + DV PLPR+DD +  L     F+ VD+  GYWQ+P+H  D EKTAF TP  L+E+  MP GL NA
Sbjct:    9 HHINTGDATPIRQKPYRVSPSERQVIADQVNDMLQKGVIQKSSSPWAAPVILVKKKDNSWRFCVDYRRLNAVTKKDVYPLPRIDDAVDCLHSAAYFSSVDLRSGYWQIPMHPSDKEKTAFVTPDGLFEFNVMPFGLCNA 147          
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Match: A0A6A3VJX0_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VJX0_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.470e-35
Identity = 70/164 (42.68%), Postives = 94/164 (57.32%), Query Frame = 1
Query:   37 PIASPPARMSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFRRLNA*RQGDVTPLPRVDDLLQKLSPEKVFTGVDMWKGYWQVPLHEDDVEKTAFNTPVRLYEWLFMPMGLTNATS----YLSGHDAGDPPRTPIQEGGRLSGRRIYL 516
            PI   P R+S  + D     IQ+ +E+G++RPS SP+AS  +++RKPDG  R CID+RRLNA    D  P+P +DD+L  L   K+F+ +D+  GYW VP+H   VEKTAF     L+EWL MP GL NA       +  H      RT     G L G R+ +
Sbjct:  175 PIKQRPYRVSNAEGDVMEAEIQQYLELGIVRPSTSPWASPVLMIRKPDGGIRFCIDYRRLNAVTIKDCYPMPLIDDILDVLRGAKLFSTMDIASGYWNVPMHAGSVEKTAFTCKYGLFEWLVMPFGLCNAVPAFERLMENHRLPYSSRTTTTSAGTLQGCRLQV 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig846.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XT50_HETAK4.810e-5668.03Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XLC6_HETAK3.810e-4592.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6G5AC45_RHIMP7.160e-3747.89RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhi... [more]
A0A7J7K478_BUGNE1.630e-3646.85Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
A0A7J7JPA8_BUGNE5.250e-3646.85Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
L7LV55_RHIPC5.370e-3647.89RNA-directed DNA polymerase n=1 Tax=Rhipicephalus ... [more]
L7ML08_RHIPC7.430e-3647.89RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhi... [more]
A0A8J9ZJW5_BRALA7.560e-3648.94RTL1 protein n=2 Tax=Branchiostoma lanceolatum Tax... [more]
A0A6G5A909_RHIMP1.460e-3546.04Putative tick transposon n=1 Tax=Rhipicephalus mic... [more]
A0A6A3VJX0_9STRA1.470e-3542.68Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig846contigH-akashiwo_Contig846:93331..93889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3659.XP_004153884.1
PFAMsRVP_2,RVT_1
Model size559
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.42e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37Z60@33090|Viridiplantae,3GNCY@35493|Streptophyta
DescriptionRetroviral aspartyl protease
Cds size165
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388009.5521126-UTR-H-akashiwo_Contig846:93330..936641681388009.5521126-UTR-H-akashiwo_Contig846:93330..93664Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig846 93331..93664 -
1681388009.5752182-UTR-H-akashiwo_Contig846:93829..938891681388009.5752182-UTR-H-akashiwo_Contig846:93829..93889Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig846 93830..93889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388009.5646813-CDS-H-akashiwo_Contig846:93664..938291681388009.5646813-CDS-H-akashiwo_Contig846:93664..93829Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig846 93665..93829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig846.1.1prot_H-akashiwo_Contig846.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig846 93665..93829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig846.1.1

>prot_H-akashiwo_Contig846.1.1 ID=prot_H-akashiwo_Contig846.1.1|Name=mRNA_H-akashiwo_Contig846.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
MSEEQRDQARDTIQEMIEIGVIRPSKSPYASCTVLVRKPDGTWRCCIDFR
RLNA*
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mRNA from alignment at H-akashiwo_Contig846:93331..93889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig846.1.1 ID=mRNA_H-akashiwo_Contig846.1.1|Name=mRNA_H-akashiwo_Contig846.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=559bp|location=Sequence derived from alignment at H-akashiwo_Contig846:93331..93889- (Heterosigma akashiwo CCMP452)
AAGACCAGACACCGCATCATCCTACACACGGACAAGCCCATCGCGTCACC CCCCGCCCGGATGAGCGAGGAGCAGAGAGACCAAGCGCGGGACACCATAC AAGAGATGATTGAGATTGGAGTGATCAGGCCTTCGAAGTCACCCTACGCG TCCTGCACGGTGTTGGTGCGGAAGCCGGACGGGACGTGGAGGTGTTGCAT AGACTTCCGGCGTTTGAACGCGTAACGGCAAGGCGACGTCACTCCCCTGC CCCGGGTCGACGACCTCCTGCAGAAGCTCTCTCCAGAGAAGGTGTTCACG GGGGTCGACATGTGGAAGGGGTATTGGCAGGTGCCCCTCCACGAGGATGA TGTGGAAAAAACGGCGTTTAACACGCCCGTTCGCCTTTATGAGTGGCTCT TTATGCCCATGGGGCTCACCAACGCAACGAGCTACTTATCAGGCCATGAT GCAGGAGATCCTCCAAGAACACCTATACAAGAGGGTGGTCGTCTATCTGG ACGACGTATTTATCTTCTCAGACAACGAGGACGATCACCTGCAGGACGTG ATGGCGGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig846:93331..93889-

>mRNA_H-akashiwo_Contig846.1.1 ID=mRNA_H-akashiwo_Contig846.1.1|Name=mRNA_H-akashiwo_Contig846.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig846:93331..93889- (Heterosigma akashiwo CCMP452)
ATGAGCGAGGAGCAGAGAGACCAAGCGCGGGACACCATACAAGAGATGAT
TGAGATTGGAGTGATCAGGCCTTCGAAGTCACCCTACGCGTCCTGCACGG
TGTTGGTGCGGAAGCCGGACGGGACGTGGAGGTGTTGCATAGACTTCCGG
CGTTTGAACGCGTAA
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