mRNA_H-akashiwo_Contig845.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig845.1.1
Unique NamemRNA_H-akashiwo_Contig845.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig845.1.1 vs. uniprot
Match: A0A7S3UWK5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWK5_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 1.880e-23
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SRYSKFLLRPPHHAANDSESLDQSSGLTWGSLVTATQQPQTFILEIT 141
            SRYSKFLLRPPHHA NDSESLDQSSGLTWGSLVTATQQPQTFILEIT
Sbjct:   47 SRYSKFLLRPPHHATNDSESLDQSSGLTWGSLVTATQQPQTFILEIT 93
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BLAST of mRNA_H-akashiwo_Contig845.1.1 vs. uniprot
Match: A0A7S3XLV6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLV6_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 5.210e-23
Identity = 46/47 (97.87%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 SRYSKFLLRPPHHAANDSESLDQSSGLTWGSLVTATQQPQTFILEIT 141
            SRYSKFLLRPPHHA NDSESLDQSSGLTWGSLVTATQQPQTFILEIT
Sbjct:   90 SRYSKFLLRPPHHATNDSESLDQSSGLTWGSLVTATQQPQTFILEIT 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UWK5_HETAK1.880e-2397.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XLV6_HETAK5.210e-2397.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig845contigH-akashiwo_Contig845:6426..12167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size143
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388009.406041-CDS-H-akashiwo_Contig845:6427..64991681388009.406041-CDS-H-akashiwo_Contig845:6427..6499Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig845 6428..6499 -
1681388009.4193037-CDS-H-akashiwo_Contig845:12098..121671681388009.4193037-CDS-H-akashiwo_Contig845:12098..12167Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig845 12099..12167 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig845.1.1prot_H-akashiwo_Contig845.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig845 6428..12167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig845.1.1

>prot_H-akashiwo_Contig845.1.1 ID=prot_H-akashiwo_Contig845.1.1|Name=mRNA_H-akashiwo_Contig845.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=47bp
SRYSKFLLRPPHHAANDSESLDQSSGLTWGSLVTATQQPQTFILEIT
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mRNA from alignment at H-akashiwo_Contig845:6426..12167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig845.1.1 ID=mRNA_H-akashiwo_Contig845.1.1|Name=mRNA_H-akashiwo_Contig845.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=5742bp|location=Sequence derived from alignment at H-akashiwo_Contig845:6426..12167- (Heterosigma akashiwo CCMP452)
TCTAGATACAGCAAATTCTTACTCCGCCCTCCCCATCATGCCGCAAATGA
CAGCGAATCACTTGACCAGGCAAGGCTTTCCCACGATATCACATATATTA
TATAGTGCAAAACATATATTTTGGTGACACTTTCGTATCACCTCCCTGGA
TCATGTCTTCTGTATGTGTATTACATGAGCCCCGACCTCCACACAAACGG
ATTAATCCAATGCTAGGTCTCATTTCTTTTCCCTGTTTATACCACCAAAA
CTTAGGGGAAATCCATACTTCTTTCCCAGCTGCTTCCCAGATGACAGCCC
ACTCCCCTCTGCTCCCAAACTGCCAGCAGTCACATAGTCTATCTGCCCCC
CCATACTAATCCCTCACCCCCCATTCCTGGAGTCCCACGGTCCCCTGATC
CCCACCAGCAGCAATTCCATATATTCTCTCTGAAATACGCGTGGCCTGTC
AGAGGATTTCCTCATTTTGATGCCACAAGTCATTGCACTCAGCACATCCC
AACTCAAAGTGCACGGCAATGTCCTTTTCGTCAGGCCTTCTCTGGGTTGC
CATCACCTTCCCTCTACACCTTCTCCCCGGCACCCCCCCTCTGCCCCCCT
TTTCTGCCGTCCCGTGCCCTGTTGTTGCCTTGCAACTACCGACCATTCTG
GTCTATCTCCCCCCCCCCCCTTCTCCCCAGATCGCCCAATGTCCGCATTC
TCTTGTAAATTTGCAAACTCCCCGTCCAAAAATTTGGCATTGACCCTCTT
CTGCACCAGCTCCTCCCTCAACCCACTGCTAAGTAATAATCTTATCAAGA
GACATCTGCTCCTGTATTGCAAGCCATTTGTCCGCCGCTGGTTTTTTGCC
TTTGCTTCTTCTGTTTTTTCTGGGTCTTCTTGCTATTGGATGCTTGTCTA
TCTCTAGTCTCAGCGTCCACTGCCCGCTGCTGTTTTGGTAACCTCCCCCC
CCACCCCACCCGACCACCCCTTATCTGCACTATTTACCGTAGTCCCTGCA
GAACCCTCATCACTGCCCCTATCGCCCCCCACACAATTCAACACTCTGGT
CACCTTTTACTTCCCCAATAACCTCCCCTTCCCTGTTAGAGCTCCTATCT
TTATTGCAAGAGCCCCACTCTCTTCTACCTGGTCGCATTCCTGCTACAGA
TGCTTCACGAATGCTTTATACCAACTTCTTCAAAATGTGTTCATTTTCTT
CCCCCAGCTGTGGTGTTCCTCATTGTCCAGTTGGCCCTTCTCTCCACAGT
CGCTCAACACTGAGCCAGTCAACGAGCCCCCCCCCCCCTCCCCCTTTCCC
CCCTACTCAGCCTGATCAGCCGGAGTTTATTGCCCCCGTTCATCAACTCG
TTGTTGGCCACCAATCATCGCTGTCTGGCCCTCCATTTCCCCAACCCCTC
CGGAATCCTCCTCCCCATCCCAGCCACCCTTTCTCACCTCCTAAGGCTTG
CGGCCTTGCGGCCTTAAGAAAGGGTGGTGCCTCTGGCAAGAGTGAGCACC
ACACTACCCCCGGTGCCCTGTGCATGCTGCCACAGTATTCCCTGGCATGT
AAATCCCCTGACGCCGCCGTTTTGCATTCAGAGACCACTCATTATGGGAC
TGATGTCTTTGCATCGCGGTCTCTTTGGAATTCGAGCATTATGTGCAGTT
TCTGTGAATACTCGTGCTACGATATGAGATCTCGCTTTTCGATATGGGTA
TGATGTATCCCGAAGCTTATTTCCGTTTTTGTATCTTTGGTTATCTCTAC
ATACTGGCGGGAAACTCTGTGATTGGCTACAATTGAGTTACTCTGTTGTT
TACCACCAACTGGAATGTATTTCTGGAATAGAAACCAATGGTCTTTTGGA
GATGACAAAAGTGGTTATATCATTTGTGAGGAATGATGACAAATATATTT
AGACTGACGTCATCAGAAATGGTTTACTCTGCTTAGACTACCAACAACAG
CAGCAGCAGCAGCAGCAGTTGTTGAAGTAGCTAGTATCTTAGAGACGGAG
CAGCACAGCTCTCGGCACCATCATCATAACTTCCTCTTTTTACATTCAAT
ATTTAACACCTTTGGACTTGTCCATCTTTTGGTAGTATTTTTCCAGGCTC
TGCCTGCGGCCCGCAGGGCTTGCTTGCTTCAAGCTTGCTAAAGTATTATT
ATTTAACTGGTTATGCATGCCCACCGCGTTTGTTCCTCAGTGACTTGCCC
TGCTTCTGCCCAATGCAGCGCCGGTTCTTTGGTCCTCAAATGCTTGACGG
TTTTGCTCGACGGAATATCGGTTGGGATTCTTCTGACCTATCGAAAGCAA
ACTGCTTTGGGTACAGAATCTTTCAAGTTCTTTGAGCTTAGTTTACGCTG
GTGCCGCTTACGGTGTGACGGATACCAGTTTATTCTAGTCTTGACGAAGA
TGGGTCATCTATGACCGCAACTGTGTGAGTGTTTGATCTACTGCATCCCG
TGGGGAACGGTTCAACCTTGTGCTTAAAATATCGAAGGCTGACTGCGGAC
GATCAAGATCTTTTCATTTCGAAGATGACAATGTGCGCCTGCGCATTGTG
GAACAACAGTGTGAAACTTACAGTGAGCGCTATGCTGAATAATGTGGAAA
CCTAAACTGATGGTCTACTGGACCCTTTATAGTTTCTGCTACCTCTCCCT
CTTCCTGTGTATCTCTTCTCGAGACGATGAAATATTGTTCAAGCTTTCTG
GTCTTCGTGACACGACCACCACCACCACCGACTGGTGGTCTTCTTCTTCT
TGGACGGCGGCGGCGGCAAGGAGGAGGAGCTCCTCATCATCATCACGATG
ACGACGACGACGACGACAACAACAAAACTGCGGCTTGCAGCCCAAAACTC
GAAGAGAGTTTTAGTTTGAATAAGGCAAATACAGAGTCGCAATACAGGAG
GACACAGTGGAAAAAACGACAAACAGCAATAGAAACGAATTTTTAAAAAT
GCACTCAGTTACAAAACCTCAAGGCTCGGGTAACACTTCACACCTTGGGT
TAGATCATCTTTATACGGACCACGAAATCGATATATTTAATCGTGAAGTA
CGAGTATATAGCGTTTTTTCACTCTTATACGCACTCCGAGTTGATATACT
TCAAAAGTGGCGGGCTCAAAAGTGAATGTGATATACTTCAAAACACGGGT
TTTGAAGTATATCACATTCACTCTGAAGTATATCACGTGGCGGTGACGTG
GCAAACCAGATGTCTCGATTTACAACATGCAGATATAGGAAGGCGAATAA
GAAACAAACATGCTGACAACAAGTAAAGGTTAGAAAGATCATGATAAATA
TATAGGGAACAATATAGAAAAGAGATAAGTTCATGCGCATCCGCAGCTGC
TTTTGCGCGCAGATGCTCGAGTCAAGTATATCAATCTCGCTGATCCGTAT
AAAAATGAAAAAGTCGGTGTACTTCACTTCCTTGAAGTATATCGATCTGA
TATACTTGCGATCTGCTTAGCCTATCAGATCGCTCCATTTCGTGAAGTAT
ATCGAAATGAAGTATATCACTATAAAGATGCTCTTAGGGGTATATCATAG
CGCACGCCACTGCCGATATCGGCGCTATAGCGCGCAGCCAAAAACCTGCC
CAGTATCGCACGACATAATATATGTCATTGGAACCGCAATATCGTGATAT
CTCGGTTGACACAGGTTGCGCGATAATTCAAATGCAAACCCGCAAACAAA
ACCTATAAGAGCCGGCAGAAAAATCCTTGAAATTTTCGAGCTGTTCTCCA
AACGATACAGAGTCGCTTCTTCACACGCGTTTGCTGGTTGGTCCCGGCAC
GATGATTGCGGAGAGAAAATAAGATTGCGTGGGCGGTTCAAATACCGTGA
TATCTCGGTTGACACAGGTTGCGCGATAATTCAAATGCAAACCCGCAAAC
AAAACCTATAAGACCGGCAGAAAAATCATTGGAAATTTTCGAGGACAAGG
TGAATGGATTACACGTGGCAAAAAACCCTTACCATTATTACCATTACCAC
CACCACTCTTCTTCTTCGAACGATGCTGGGGGTCGGTATTTCTCATATTT
CTATTGTTGTTCGTCGTTTTTTCCAATGTGTCCTCCTGTATTGCGACTCT
GTATTTGCCTTTACGATGCTCACGGATGGAAAATAAGACCTTTGCCGTCT
GATTTAACAACTCTTCGAGTTAACAACACTGGCAAAATTGAAAAATGTGG
AATTCGCAAGGCAGGCAACTTGCTCTCAAGTTTGATCTTCAATGGCATAC
GATGAGGCTCTCCTCTTCAGCTATCTATGGATTGTACCTGTGACTTCATT
TCTACTACACTGTGCAGAAGGAAGCGTTAATGGGTTCTTCTCATCAGGTG
CACATCACCATGCCCCTAGCTGGCAGCCACCAGCAACGACACTTCTTGCT
ACTGTGATTCTTACTGCCAACTTCAATGACTACTCAGGACTCAACTGCTT
ACTCCATGTTCAATTAGGGAGGAGCATTCAGAGACCACTCTTTATGGGAC
CGATGTCTTTGCATCAGCGGTCTCTTTGGAATTCGAGCATTATGTGCAGT
TTCTGTGAATACTGTGCTACGATATGAGATCTCGCTTTTCGATATGGGTA
TGATGTATCCCGAAGCTTATTTCCGTTTTTGTATCTTTGGTTATCTCTAC
ATACTGGCGGGAAACTCTGTGATTGGCTACAATTGAGTTACTCAGTGGTT
TACCACCAACTGGAGTGTATTTCTGGAATAGAAACCAATGGTCTTTTGGA
GATGGCAAAAGTGGTTATATCATTTGTGAGAAATGCTGACAAATATATTT
AGACTGACGTCATCAGAAATGGTTTACTCTGCTTAGACTACCAACAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTTGTTGAAGTAGCTATTATCTTAGAG
ACGGGAGCACCACAGCTCTCGCACCATCATCATAATTTCCTGTTTTACAT
TGAATATTTAACACCTTTGGACTTGTCCATCTTTTGGTAGTATTTTTCCA
GGCTCTGCCTGCTTGTGGGGGTGTTGGCTGTTTTGCTTCCAAGCTTGCTA
AAGTATTATTATTTAACTGTTTTGTCCCGAAAACTGCACCCAAACCAGCA
ACATCACTCCCTCAAAGACCCCCTACTTGATGATGTCGCTGGTTCCTCTA
ACTTCTGCCCGATTCCACTAATCCTCGCGAGCCCCCATCCTTCAAGCACC
ACCGTTTCCACCTTATAAACACAATAAGGTAATCGATCGTGATCTCCTCT
ACATACCCTAATTAAGAGCTGCTTGAGTAGTGATAATGTGTATCATATGT
GTATGTGTGCTCTTTAAATAAGTATACAATGATGATGGTGATTTTAATTT
ATATTTAAAAGATCCAACAACCGTTCGAATATTTCAAAGGCATACATCCC
AGCCTCCACATGCACACCCTTCCATTTCTGGGCCCCACTGCCTGTCCCCT
GTTCATCACCAAAAACTTGAGGGAAAATGCCCCTCTATACTTCCCCGAGC
ATTTCCCAACCTATACAACCAGCTCCCCTCTGATTACCAAATATCAGTAG
TGTCAAAGATGAGTATATTTTTATGTTATGAATAATGAATCATATCTCAT
TCATCAATTACAATGGTGTGCTGATGATGAATATTTCCCCTTTTCTTTAT
GTTCACTTTTTTTTCCAGTCTTCGGGCTTAACCTGGGGTTCGCTGGTGAC
AGCTACACAACAACCCCAGACCTTCATCCTTGAAATAACGGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig845:6426..12167-

>mRNA_H-akashiwo_Contig845.1.1 ID=mRNA_H-akashiwo_Contig845.1.1|Name=mRNA_H-akashiwo_Contig845.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=141bp|location=Sequence derived from alignment at H-akashiwo_Contig845:6426..12167- (Heterosigma akashiwo CCMP452)
TCTAGATACAGCAAATTCTTACTCCGCCCTCCCCATCATGCCGCAAATGA
CAGCGAATCACTTGACCAGTCTTCGGGCTTAACCTGGGGTTCGCTGGTGA
CAGCTACACAACAACCCCAGACCTTCATCCTTGAAATAACG
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