mRNA_H-akashiwo_Contig843.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig843.1.1
Unique NamemRNA_H-akashiwo_Contig843.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig843.1.1 vs. uniprot
Match: A0A7S3UPX1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPX1_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 3.090e-6
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = -1 
Query:   31 GRRSTDFSEADLDGLEREAQELNSGLSKAAA-QRYS 135
            GRRSTDFSEADLDGLEREAQELNS LS+    +RYS
Sbjct:   41 GRRSTDFSEADLDGLEREAQELNSLLSEGPLPRRYS 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig843.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UPX1_HETAK3.090e-680.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig843contigH-akashiwo_Contig843:171384..172001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size137
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388008.7966561-CDS-H-akashiwo_Contig843:171383..1714461681388008.7966561-CDS-H-akashiwo_Contig843:171383..171446Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig843 171384..171446 +
1681388008.808304-CDS-H-akashiwo_Contig843:171927..1719991681388008.808304-CDS-H-akashiwo_Contig843:171927..171999Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig843 171928..171999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig843.1.1prot_H-akashiwo_Contig843.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig843 171384..171999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig843.1.1

>prot_H-akashiwo_Contig843.1.1 ID=prot_H-akashiwo_Contig843.1.1|Name=mRNA_H-akashiwo_Contig843.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=45bp
LSSGTPRGSPRVPLGSGLGQPAVQLLGLSLQAVQICLREVSAPAP
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mRNA from alignment at H-akashiwo_Contig843:171384..172001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig843.1.1 ID=mRNA_H-akashiwo_Contig843.1.1|Name=mRNA_H-akashiwo_Contig843.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=618bp|location=Sequence derived from alignment at H-akashiwo_Contig843:171384..172001+ (Heterosigma akashiwo CCMP452)
CTTTCAAGTGGCACTCCTCGAGGTTCTCCTCGAGTACCGCTGGGCAGCGG
CCTTGGACAACCCGCGGGCCAGGGGGGCGGGCGGGCGGGCGGGCGGGCGG
GCGGGGCGGGGGGGCAGGCTCCTTTCCCATGGAGGCAACCCAGAAAATGC
ATGCAACGGGATGATATAATATGACATGATGATAATGATACATATATCTG
GATTATAGATAGAGTATGAAAGTCTTGGTAATGCACTCATATAGGGGTTT
CATGCGTTGTGTATATGTATATATGGTCAGCCACCAGCTTTGGCTGGTGG
TATGTACTGGAAACAGCGTTGTCCGTGTCAAATCTGTGAATGTTGACAAA
ACCTTTGACGCATTGCCTCTTTGGCAATATTCAGCTACACATTCACTGAT
GACAGAAGCGGATTTTCTGTGATAGATATCCAACACCTCCCTAGATATAT
TTCATACACAGTAAAGTGCGCTTTTATTATACAGTAGTATCCCTGAGTCG
CGCGCAAAGGCCGAGGGCTGGGAGGCATTGTTGAACGCTCACAGGCTGTT
CAGCTCCTGGGCCTCTCTCTCCAGGCCGTCCAAATCTGCCTCAGAGAAGT
CAGTGCTCCGGCGCCCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig843:171384..172001+

>mRNA_H-akashiwo_Contig843.1.1 ID=mRNA_H-akashiwo_Contig843.1.1|Name=mRNA_H-akashiwo_Contig843.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=135bp|location=Sequence derived from alignment at H-akashiwo_Contig843:171384..172001+ (Heterosigma akashiwo CCMP452)
CTTTCAAGTGGCACTCCTCGAGGTTCTCCTCGAGTACCGCTGGGCAGCGG
CCTTGGACAACCCGCTGTTCAGCTCCTGGGCCTCTCTCTCCAGGCCGTCC
AAATCTGCCTCAGAGAAGTCAGTGCTCCGGCGCCC
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