mRNA_H-akashiwo_Contig84.53.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig84.53.1
Unique NamemRNA_H-akashiwo_Contig84.53.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig84.53.1 vs. uniprot
Match: A0A7S4DBJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ1_HETAK)

HSP 1 Score: 172 bits (437), Expect = 1.270e-48
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 LGPNATVTLSDDNYIKVIVCRDGNLPSKLSQMDLIILDSGQLIAIIFGSFIVLFLALTLIHGAISGLFSTAKSHQDPWDEDNLKKRREG 267
            LGPNATVTLSDDNYIKVIVCRDGNLPSKLSQMDLIILDSGQLIAIIFGSFIVLFLALTLIHGAISGLFSTAKSHQDPWDEDNLKKRREG
Sbjct:  510 LGPNATVTLSDDNYIKVIVCRDGNLPSKLSQMDLIILDSGQLIAIIFGSFIVLFLALTLIHGAISGLFSTAKSHQDPWDEDNLKKRREG 598
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig84.53.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DBJ1_HETAK1.270e-48100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig84contigH-akashiwo_Contig84:1786337..1791045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size267
Hectar predicted targeting categorysignal anchor
Exons3
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388006.1970234-CDS-H-akashiwo_Contig84:1786336..17863981681388006.1970234-CDS-H-akashiwo_Contig84:1786336..1786398Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig84 1786337..1786398 +
1681388006.207026-CDS-H-akashiwo_Contig84:1786989..17871121681388006.207026-CDS-H-akashiwo_Contig84:1786989..1787112Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig84 1786990..1787112 +
1681388006.2166276-CDS-H-akashiwo_Contig84:1790963..17910451681388006.2166276-CDS-H-akashiwo_Contig84:1790963..1791045Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig84 1790964..1791045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig84.53.1prot_H-akashiwo_Contig84.53.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig84 1786337..1791045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig84.53.1

>prot_H-akashiwo_Contig84.53.1 ID=prot_H-akashiwo_Contig84.53.1|Name=mRNA_H-akashiwo_Contig84.53.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
LGPNATVTLSDDNYIKVIVCRDGNLPSKLSQMDLIILDSGQLIAIIFGSF
IVLFLALTLIHGAISGLFSTAKSHQDPWDEDNLKKRREG
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mRNA from alignment at H-akashiwo_Contig84:1786337..1791045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig84.53.1 ID=mRNA_H-akashiwo_Contig84.53.1|Name=mRNA_H-akashiwo_Contig84.53.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4709bp|location=Sequence derived from alignment at H-akashiwo_Contig84:1786337..1791045+ (Heterosigma akashiwo CCMP452)
CTGGGGCCGAACGCGACCGTCACCCTCTCGGACGACAACTACATCAAGGT
CATCGTCTGCAGGTGCGTGCGCCCAGCCCGGGACCGAGGACGGCGCGGGG
CTCTGCGCGGTGCGGTCGCCGAGCGGCGGCGCCTCCGCCCCCCCCTTCCC
CTTTCCCCTTGCCGCACCCCGTCGTCTTCGCCCGAATACGAGCGACTGGC
CTGCCGACCCGGCACCTGTGTTCCGATCTTGTGGTGGGTGGTGGGTGGTC
GTGGTGGTTTCTGCTGCCGGCCCGGGGCTTCATCAAGGAGGGTGATTTAC
AGCACTTTGTCTGCTCTTCTACTCTTGCCCTGATGCTGTTATGCACGATG
CCATGACCCCTAGATGGTACGCTTTTTCATCTATAATATACTTTATTACC
TCGATATATTATGACCTGTTGCCAAATTTGTTGAACTCATGAATCAGCAT
TTGATGGCGATATTTAGTTATCCAGTGATTGTTTACAGCATACGCGTTTT
TTGGATGTTATTTGGCTTAGTTTTATTTTATGTTTGTATTTTAGGTAATA
TATTTAGTTACCAACTGACTTTTTGTAGCATGAGCGTTTGGATTATGTTG
AATTAAAATTTATTTTATAATCATTATTTTCCGTTTTGTGTTCACTTTAA
CAGGGATGGTAATCTGCCTTCAAAGCTGTCTCAAATGGATCTGATCATCC
TGGATTCTGGGCAGCTGATTGCGATAATATTTGGCTCCTTCATTGTCTTA
TTTTTGGCTCTCACACTGATCCATGGGTACGCAACCTAGGGTGTGGCAGC
CACATTGAAAATGGAAACAACTTCTTCTTCTACAACCTGTATGTATATAT
ATATATATATATATATACTTCTTCTACAACCTGTATGTATATATATATAT
ATATATATATATATATATATATATATACCACAGGGACATCTGCATAGATG
CAAGGCGTAGGTTGTTTTGTTTAAATTTAACTCTCTGTATATATATATTA
TTATATATATATATACATCCTTCTACCTTTTTACATATGTATGCTGATGA
TGGAAGCTGCTTTACTGTTTGAACCCAACAACGAGACTGCAGATTTTGTT
GTGAGGGGTGTGTGGGAGCCTGCTAGGGACTGTCTTTTTGATACCCGCAT
CATACATGCTGGCAGCGCTGGGCGTGCAAACCAACACATCTTACCAGAAT
GCCCTCCATACCTCTGTCCGTGAAAAGGTGAAGAAGTACAAGGCTGCTGC
AGAAGAGCGACGTGCTACTTTATGCCCCTTGATAGTCACTGTGAAGGGTT
TTGCCCACCAGTCCATGCAGGCCTTCCTCAGGCGCATTGCTGCTCGGCTC
TCGGCAAAGTGGCAGACGCCTCTCTCAACAGTCAGCAACTGCGTGTGTGT
CCGTCTGCATTTCGCGCTCATCAAGGCGGTGGATCTGCGGACCAGGGGCT
CCAGGAAGAAGTGGTGGAACTCAGGGTTCGAGGATTGTAAGGGAATTGCG
GTTCTCTTCCAGAGATAACTGGGATAATGGGGTGTTGTGCTGTATCTTTT
TGTTTGGATCCTAAGCATCTATGCACAGGGTGAGCAAGTAAGGACAAGTA
CGGGAAAGAAGTACGGTATACTTGCCAGAAGTACGGGGAAGTTTGATCAT
CTTGTTACTTTTTTTTTTTTTTTTTTTTTTTTCTTTTGCTATGAGAGATG
ATGAGGAGGGGGGTCAAGATAATGAGGGCGGTGGTCTCCCCCCCCCTCAG
CCGTCACCACCTTTTGATTGTGTTTCCTCTTCTGCCATACATATGCACAG
TGTCCTGGTTAATTATCATCATCTTGCACTGAATAAAAAGTCTCATAGTA
TCATTTTTGGTACTAGCCATAGGAAGTACCTTCTTTGTTTCTTTTAAAGC
CCCCGTCCCCCGTCCCCCACCCGTCCAACAGCCCCCACCCCCACCCACTC
CCTGCCCAACAACTTGAGCACTCTAGATTTGCCAGTATCTGCACGCTTGG
CCATCAGCTCTAAAGCACAAGGGATAGGATTGGCTGTAGTAAGGGCTGTA
GTAAGGGTGGGAGTTCGAAATAAGGGTATAAATAAGGGTGGGAGTTCGAA
AGGAACATCGAAGGAGGAAGTTTGGAATGAGGGCTAGTATCAGTTCCTAA
GGAGGGCTAGAAGCTCCGTGAGGGCCACATTGTTTGGCGGGATCGTTTTT
GGGAGTTAAGTCGTACTTGTCGCTGGTACAAGTGCGACGTACGAAAAAAA
ATCTTCCATATAAGTTGTACTTGCTCGTCCTATGATCCTATGGTTTCAGT
ATGTTTTCTATTGAGTTGGGTTTTGGGGTTTCATGTTTATGTTTTAGTAT
GTTACCACAGGGACATCTGCATAGATGCAAGGCGTAGATTGTTTTGGATG
AATATTTTATGAATTGGGTGGAAGTTATGGGACCTAGAAGTGGAAGGGTC
TGTGTATGGAGGCCGGTACTTCGGTCATTCTAGTTATCCAAAAGGCTGGA
CCTTAAATATTGTGGAATGATAACCACAATCATCATATTTAACAGACTGT
GATATGATGTTTTTTTTTTTTTTTTTTATTCACTGATTCGACCACATAAT
TTTATTATATATAATAATGTTATGTTGCAGAGGTTGGGTTCAAACCGAAA
AACCGCTTCCATCATCAGTGAGTGTAGCTCCATATATTGCCAAGAAGGCA
ATATGTCAAAGCTTTTTAATCATTATAACTCAACTCCATGACAACTATGC
TGCATTTCGGCTACTAAAAGCCACGGCTGGCGGCTCTATCCTTCTCCCGC
CAGCCTTCTTCAGGCTGCCTTGGAGCAAATAATAAACCAAGTGAAGATGG
GAAATGAAAGAAGAAGAAGAAGAAGAATGGAGTGCGCAACAAAAAATGAA
AAGCAGCAACGGCAGGAGCCACCACCACCACCAGTCATTGTTGTCTCATG
TACCTCAGCTGTTAAGGAAACATTCTGCCCCCCTTCTTTTCCTTTCTTGG
AGTGCCTCAGCTGTTAACTGAAAACAGCAACATACTTAACCCCTCAACCG
ATTTGGGGGAAGGAATTCCTTCCCCCTCCGAGAAAGACAGAAAAAATCGG
TGATACATTTTTTTTCCAATCGTTAATTTATTGCATTCGTTTCGGTGGAT
CAGTGATGTCAACGCGAACGCAGCGCAGAAATTTGGGATAATGAAGAAGC
ACAGACATGGAGACCAGGGTGTTTCTTTGACGTCAACGCAAACGCAGCGC
AGGAATTCAGAATAGTGAACAAGATGGAGTAGAGGAACAGGGTTTTTCTT
TTATTCACTTTTCGCTTCGTACTGGAAGGAAATCATTCGAAACAGAAGAG
AAGGAGAAATATAGACCTTTAATCGTTATTCCAGATTCCAGTCAAGTGCT
TGCGTCCTGCGTACAGTCCATACATCATGCTGTGGATACGTCCGTTGGAA
AATTTTGAATCACAGACTTCAATATATATGATTTGAAACTGCAAGTTTTA
TGTTGATTGTTTTTTTTTTTTTTTGTGTTTTGGTGTATAAACTCATCTGG
AAATATTAGTTTGACACAAAACAACAACAAATTCAAACAAAACACACCGA
CATCTTCAATCGTTTTTTAAACCCGACACTTCGCACGTTTTTTTGTAGCC
GTTTTTTAAATTGTACAACCGTTTTTTAAACTGTTGCTGGAATGACGTGG
CCAGTGACGAGGCATAGTAACTAAGTTGGAATGACGTGGCCAGTGACGAG
ACAGAAAGCATTTTTATTTCCAATCATGTACTATTGGTTTGCCCAAGACT
ACTGATGATTGTACTTCTTGTTGTGCTGCTTGTTCTACTTGAGTGGCTGA
GAGTTGACCCTGTGGGGCTGAAATGAGACTTTTTCCAAGATGTTCCATCA
TGTTTTCTGGAATACTTTATTATCTTAAAATAGTTTTTTTTTCAAAAATT
TTGGTCTTTTCAGATCCAAAATTGGATGAAAACTCGTTGAGATATGGCTC
TCTGAAGGTCAACCCACTTATTTTGGGGGCGGAAATACGGTTCAATAGAA
ATTGGTTGAGGGGTTAAGGAAACCTTCTGCTCTCCTTCTCCTCCATGTTC
ACTACTAATCTGAGCATCATCGTCATAACCGGCACAGGTGCTGACCACGA
GCCACAGACGAAGGTCCATGATATTATGTAATATATTGCAGGGTGTTGGG
TTGAAACAGAAAAACCGCTTCCATCATCAGTGAGTATAGCTCCACATTGC
CAAGAAGGCGTTACGTCAAAAGTTTTTAAATCATGATAAATCCATGACAA
CTTTGCTGCATTTTGGCTACTAAAAGCCACGGCTGGTGGCTCTGCTCCTA
CCTCCACCAGCCTTCTTCAGGCTGCCTCTGAGTAAATGATAAACCATATG
AAGAAGATAAGAAATGAAAGTGGAACAGTGGAGTGCGCAAACAAAAAATG
AGAGCAGTACCGGTAGACGGGCCACCACCACCACCAGTTCATTCTTGCTT
CATTACATTATTAAATTCTATACTATGCTGACATTTATCCTGGCAGGTGG
CATATATATTAGCAATCACAGTATGTATGGTAAATCGTTGAGTACCATGC
ACTTTGTTCTCATTCATATGTTTTCAGTGCAATATCTGGTCTATTCTCAA
CGGCAAAATCCCACCAAGATCCTTGGGATGAAGATAATCTGAAAAAGCGA
CGAGAAGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig84:1786337..1791045+

>mRNA_H-akashiwo_Contig84.53.1 ID=mRNA_H-akashiwo_Contig84.53.1|Name=mRNA_H-akashiwo_Contig84.53.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig84:1786337..1791045+ (Heterosigma akashiwo CCMP452)
CTGGGGCCGAACGCGACCGTCACCCTCTCGGACGACAACTACATCAAGGT
CATCGTCTGCAGGGATGGTAATCTGCCTTCAAAGCTGTCTCAAATGGATC
TGATCATCCTGGATTCTGGGCAGCTGATTGCGATAATATTTGGCTCCTTC
ATTGTCTTATTTTTGGCTCTCACACTGATCCATGGTGCAATATCTGGTCT
ATTCTCAACGGCAAAATCCCACCAAGATCCTTGGGATGAAGATAATCTGA
AAAAGCGACGAGAAGGG
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