mRNA_H-akashiwo_Contig84.46.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig84.46.1
Unique NamemRNA_H-akashiwo_Contig84.46.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig84.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig84contigH-akashiwo_Contig84:1442420..1442936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size314
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388006.1483555-UTR-H-akashiwo_Contig84:1442419..14425651681388006.1483555-UTR-H-akashiwo_Contig84:1442419..1442565Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig84 1442420..1442565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388006.1574075-CDS-H-akashiwo_Contig84:1442565..14426671681388006.1574075-CDS-H-akashiwo_Contig84:1442565..1442667Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig84 1442566..1442667 -
1681388006.165628-CDS-H-akashiwo_Contig84:1442870..14429361681388006.165628-CDS-H-akashiwo_Contig84:1442870..1442936Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig84 1442871..1442936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig84.46.1prot_H-akashiwo_Contig84.46.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig84 1442566..1442936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig84.46.1

>prot_H-akashiwo_Contig84.46.1 ID=prot_H-akashiwo_Contig84.46.1|Name=mRNA_H-akashiwo_Contig84.46.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
WGDPVALPLGPGVYNQTIRILQAAGRVNEAQQVLKEKMESQWLASKKEPP
PTKPS*
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mRNA from alignment at H-akashiwo_Contig84:1442420..1442936-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig84.46.1 ID=mRNA_H-akashiwo_Contig84.46.1|Name=mRNA_H-akashiwo_Contig84.46.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=517bp|location=Sequence derived from alignment at H-akashiwo_Contig84:1442420..1442936- (Heterosigma akashiwo CCMP452)
TGGGGCGACCCAGTTGCTTTACCACTTGGGCCTGGGGTCTACAATCAAAC
AATTCGAATACTTCAAGTAAGTCGTTACCTCCATGATAATTTGTGTATAT
CGTTTGTTGGATTCCTTTTCTTTCATACACAATTTGATACGGTAATAATA
ATTTGGCGATAATATATTCTCACAAATTAGATTAAACTTCGATTTTCCAT
CAGAGTCCTCTTATTAACAGCAGTTTTCCTCTCCTTCTTTTTTTTGTTTT
TAAATAATGATGAACACAGGCAGCAGGGCGAGTAAATGAAGCCCAGCAAG
TGCTCAAAGAAAAGATGGAATCCCAATGGCTTGCCTCAAAGAAAGAGCCA
CCACCAACAAAACCCAGCTAATTTAGGCTCTTAGATACTATTGACTTGAA
GTAGCGATTGCTGGTGGCTGTGCTGACGCAGTTTGCTTGTTGCTGAGAAA
CAAACCTTGTTGATCATATTTGTTGGGAGGAGTTTCACTTGTTGCTGCTG
AGTTTTTAATAATAAAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig84:1442420..1442936-

>mRNA_H-akashiwo_Contig84.46.1 ID=mRNA_H-akashiwo_Contig84.46.1|Name=mRNA_H-akashiwo_Contig84.46.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig84:1442420..1442936- (Heterosigma akashiwo CCMP452)
TGGGGCGACCCAGTTGCTTTACCACTTGGGCCTGGGGTCTACAATCAAAC
AATTCGAATACTTCAAGCAGCAGGGCGAGTAAATGAAGCCCAGCAAGTGC
TCAAAGAAAAGATGGAATCCCAATGGCTTGCCTCAAAGAAAGAGCCACCA
CCAACAAAACCCAGCTAA
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