mRNA_H-akashiwo_Contig84.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig84.27.1
Unique NamemRNA_H-akashiwo_Contig84.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A6V1MSR7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MSR7_HETAK)

HSP 1 Score: 128 bits (322), Expect = 4.790e-35
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 VTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYSDV 192
            VTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYSDV
Sbjct:   74 VTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYSDV 137          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A836CGB3_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.200e-17
Identity = 39/62 (62.90%), Postives = 49/62 (79.03%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNI-AASYGTWELVYSDV 192
            R+ +K EI+ L ATTNRGQ+AS+DEK  V DLVYQLE++NP+P TN   A  GTWEL++SDV
Sbjct:    6 RDSIKKEIMLLAATTNRGQLASDDEKSTVSDLVYQLEALNPTPVTNDDIAIGGTWELIFSDV 67          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: D8LSU5_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSU5_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 4.620e-15
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPK-TNIAASYGTWELVYSD 189
            RE +K E++++ AT+NRGQ+A+++EKD  +DL++QLES+NP+P  TN+    G WELVY+D
Sbjct:   34 RETMKREVLSIAATSNRGQVATQEEKDAAMDLIFQLESLNPTPDATNVNTIGGAWELVYTD 94          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A7S1UU05_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UU05_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.080e-11
Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYS 186
            RE LK E++ L + TNRG+  S++E+DIVID+V QLE++NP+P   ++AS G W+L  S
Sbjct:   54 REDLKKELMMLASVTNRGEYTSKEERDIVIDMVTQLEALNPTPNPAMSASEGDWDLCLS 112          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A7S1ZVU8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZVU8_TRICV)

HSP 1 Score: 62.0 bits (149), Expect = 5.090e-10
Identity = 28/61 (45.90%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYSDV 192
            R++LK E++ L A T+RG+ A+++E+DIV+DLV QLE++NP+P   ++ S G W+L  ++V
Sbjct:   74 RDELKRELLLLSAVTDRGEYATKEERDIVVDLVTQLEALNPTPDPALSCS-GQWDLCLTNV 133          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: B8BQA8_THAPS (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQA8_THAPS)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-9
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPS--PKTNIAASYGTWELVYS 186
            R++LK E++ L + TNRGQ AS++E+++V+DLV QLE++NP+  P  N   S G WEL YS
Sbjct:   83 RDELKRELLLLSSVTNRGQCASQEEENLVVDLVTQLEALNPTADPALN---SQGDWELCYS 140          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A6S8TX75_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8TX75_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.280e-9
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYS 186
            R+ LK E++ L + TNRG+ AS +EKDI++DLV QLE++NP+ +  +  S G W+LV S
Sbjct:   83 RDALKRELLLLASVTNRGEFASPEEKDIIVDLVTQLEALNPTAEPALQCS-GEWDLVLS 140          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: K0SUV6_THAOC (PAP_fibrillin domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUV6_THAOC)

HSP 1 Score: 61.6 bits (148), Expect = 1.430e-9
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1
Query:   10 REKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPS--PKTNIAASYGTWELVYS 186
            R++LK E+I L +TTNRGQ A+ +E+++VIDLV QLE++NP+  P  N   S G WEL YS
Sbjct:   73 RDELKRELILLASTTNRGQCATLEEQNLVIDLVTQLEALNPTADPALN---SQGDWELCYS 130          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A7R9WND8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WND8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.180e-9
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    1 VTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASYGTWELVYS 186
            V  RE LK E++ L + TNRG+ AS +E+DIV+DLV QLE++NP+ +    A+ G W+L  S
Sbjct:  100 VIIREDLKRELLLLASITNRGEYASREERDIVVDLVTQLEALNPTAEPASNAN-GEWDLCIS 160          
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Match: A0A1E7FER3_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FER3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.070e-8
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 VTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNIAASY--GTWELVYS 186
            +  R+ LK E++ L + T+RG  AS++E+DIVIDLV QLE++NP   T   AS+  G W+L YS
Sbjct:   58 IEIRDALKRELLLLASVTDRGAFASKEERDIVIDLVAQLEALNP---TRNPASHCEGEWDLCYS 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig84.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6V1MSR7_HETAK4.790e-35100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CGB3_9STRA6.200e-1762.90PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
D8LSU5_ECTSI4.620e-1552.46PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A7S1UU05_9STRA1.080e-1150.85Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1ZVU8_TRICV5.090e-1045.90Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B8BQA8_THAPS1.250e-950.82PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A6S8TX75_9STRA1.280e-949.15Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
K0SUV6_THAOC1.430e-954.10PAP_fibrillin domain-containing protein n=1 Tax=Th... [more]
A0A7R9WND8_9STRA8.180e-948.39Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A1E7FER3_9STRA2.070e-848.44PAP_fibrillin domain-containing protein n=1 Tax=Fr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig84contigH-akashiwo_Contig84:886315..886506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSU5
PFAMsPAP_fibrillin
Model size194
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.58e-16
EggNOG OGs2CY64@1|root,2S2BE@2759|Eukaryota
Ec32 ortholog descriptionPlastid lipid-associated protein/fibrillin conserved domain
Ec32 orthologEc-26_001470.1
DescriptionPAP_fibrillin
Cds size192
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388007.0170984-CDS-H-akashiwo_Contig84:886314..8865061681388007.0170984-CDS-H-akashiwo_Contig84:886314..886506Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig84 886315..886506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig84.27.1prot_H-akashiwo_Contig84.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig84 886315..886506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig84.27.1

>prot_H-akashiwo_Contig84.27.1 ID=prot_H-akashiwo_Contig84.27.1|Name=mRNA_H-akashiwo_Contig84.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
VTYREKLKSEIIALGATTNRGQIASEDEKDIVIDLVYQLESMNPSPKTNI
AASYGTWELVYSDV
back to top

mRNA from alignment at H-akashiwo_Contig84:886315..886506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig84.27.1 ID=mRNA_H-akashiwo_Contig84.27.1|Name=mRNA_H-akashiwo_Contig84.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig84:886315..886506+ (Heterosigma akashiwo CCMP452)
GTCACCTACAGAGAAAAGCTGAAGTCTGAGATCATTGCTCTAGGTGCCAC TACGAACAGGGGCCAGATTGCGTCAGAGGATGAAAAAGACATCGTCATCG ATCTCGTGTATCAGCTCGAATCGATGAACCCTTCCCCGAAAACAAATATT GCGGCTAGCTACGGAACTTGGGAACTCGTTTATTCAGACGTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig84:886315..886506+

>mRNA_H-akashiwo_Contig84.27.1 ID=mRNA_H-akashiwo_Contig84.27.1|Name=mRNA_H-akashiwo_Contig84.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig84:886315..886506+ (Heterosigma akashiwo CCMP452)
GTCACCTACAGAGAAAAGCTGAAGTCTGAGATCATTGCTCTAGGTGCCAC
TACGAACAGGGGCCAGATTGCGTCAGAGGATGAAAAAGACATCGTCATCG
ATCTCGTGTATCAGCTCGAATCGATGAACCCTTCCCCGAAAACAAATATT
GCGGCTAGCTACGGAACTTGGGAACTCGTTTATTCAGACGTG
back to top