mRNA_H-akashiwo_Contig839.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig839.3.1
Unique NamemRNA_H-akashiwo_Contig839.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig839.3.1 vs. uniprot
Match: A0A7S4D8I1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8I1_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 1.770e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 2 
Query:   14 RALLLRDKATACAAAYKAMATCIGGNQPEIAEQLLGLAGALAELGFN 154
            RALLLRDKATACAAAYKAMATCIGGNQPEIAEQLLGLAGALAELGFN
Sbjct:   85 RALLLRDKATACAAAYKAMATCIGGNQPEIAEQLLGLAGALAELGFN 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig839.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D8I1_HETAK1.770e-21100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig839contigH-akashiwo_Contig839:175899..177929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388005.5863752-CDS-H-akashiwo_Contig839:175899..1759721681388005.5863752-CDS-H-akashiwo_Contig839:175899..175972Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig839 175900..175972 -
1681388005.5955398-CDS-H-akashiwo_Contig839:177846..1779291681388005.5955398-CDS-H-akashiwo_Contig839:177846..177929Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig839 177847..177929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig839.3.1prot_H-akashiwo_Contig839.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig839 175900..177929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig839.3.1

>prot_H-akashiwo_Contig839.3.1 ID=prot_H-akashiwo_Contig839.3.1|Name=mRNA_H-akashiwo_Contig839.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
PGGGARAAAEGQGHGLRGSLQGHGHLHRGQPARDSGAAAGAGWGPGRAGV
QP
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mRNA from alignment at H-akashiwo_Contig839:175899..177929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig839.3.1 ID=mRNA_H-akashiwo_Contig839.3.1|Name=mRNA_H-akashiwo_Contig839.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2031bp|location=Sequence derived from alignment at H-akashiwo_Contig839:175899..177929- (Heterosigma akashiwo CCMP452)
CCCGGCGGAGGAGCGCGCGCTGCTGCTGAGGGACAAGGCCACGGCCTGCG
CGGCAGCCTACAAGGCCATGGCCACCTGCATCGGTGCGGGCGGCGGCGGG
CGCGGCGCCGCCGCCGCCGATGGGAGTGACGATGAGCAGTTCCACCGCGT
CTTCTTCTCGAGAGGGGCGGGCTTCTACTTTTTTTTTTTTTTTGCGTTCC
TCCTAAAACTTGCATGCAAGGTGCTCCTCTCGCTTCCTGAGCCACAATCA
CTGTCTGCTTGCAGGCCGCCTCGGCATTTGAACACTTCATCGGACATCCT
TTCGCTGCTGACCGACCCGGGAGTCCCAGCTGCGCGAAGTCCTGAATGTT
CTACTGCCCTGTGGCCTCAACGCCGTCTTTCACTTGTCTCTGCCGTAGAC
ACTTGTTCTGAACTGTTCCAACGACCGCCACATGTTTTCCTGCAGAAATG
AAAGGTGGTGGCTTGATGTAGAGCCACTGGGGGAGGAGTCCCCGAAATGC
AGGCATCTCGCTGTCATAGAGTGGGAATCTAGAGTAGTAGTATTTTCTAT
GTAGCTTTGTTCTAATCAATAAAACTTTGAACTCTATCTTATGATAATGA
TGGAGAAGAAGCATGACCTAGTGCCAGATTGTTTCGTTCAATTAAGACTA
AAATTGTCCAAGTAGAAAAAATGATTGATACTACAGTCTTGACAGAGACC
AACACCAAAAAATCAAGAGACTGCAGTATTATTGGCAACTGTACTATCAA
CTTGGTTTCGCTTCACAAGCGAAAGTGATCAAATTTACATAGAGCAAAGA
CCAATGAGATGTTTGAATTCAGCGATAACGGCCAACATGTTATTTATACA
CTGATGGTCACCCACTCAAGGTCCATATACTGTAGTTAAAGCCAATGGTA
GGGCTTATTTAGCTATAACCTTGATTGGTTGTTTATCATTTCTTCTTCTT
CTTTATCATGAGGAGAAAGATGATTCTGGGGAGAAGTTATTTTCTTCTTA
TGCTTGGCTGCTGCTCCTCTCAAGTAGTATAGCACAATAGATATATTCCG
AGCACCACCCAAGCAACAGGAGGTCAACAACCACTGATAATGAACATCCA
ATAAAGCTACTTTGATCAAACCAGGCGTTACGCCTTCCTTCGTCCTCAGG
GCTCATGCTGCCACTATGGCAAGTAGAATAGTATAGAACTAGGGACTAGG
ATATTTGTAGACTTTATTGTAAAATTTATATTTTCAAATGGTAAAAATAC
TAAAACTTTGCTAGTATTTATAGGATTTGGTCATTTTTGGGAGGAGGAAA
CTTGCAGCAAATATATAGTTTTTTTTTTTTGTATTTAATGATTTTCCGGT
CAAAATTAAAAAATCACAAATAAAAATTGGCATCTTCGTCAAACTGTAAT
GTATGAACATCGGCGACCAGCAGTAATTCAGTGACAAATGTGATTTCGGT
CGGTTTTCAATAACGATATTAAAGTTTTTTTTTTTGTCTTGGGACTTTAA
CCTAAATATCATCAGGAGCAGAGGGGGCGCGAATTAACCTCGAGTACACA
TTAACACCATAAAAGTCGGAAACATGTAACTACTATTTTTAGGTTGCTAT
TCGCACCCGCTCATTGTCATTCTACCGGGGTTGTCATGATTTCCCCCCTA
GACCTTAAGGTCACATTTTTAATTTTTTCGGGGCGAATGTCAAATAATAT
ATAAGACCCGGTCTTTTAATTGATGATGATGGAATACGATATTGGCACAC
ACACACATGTGTGCATCATATTATTGCTGGATTGGGCTGCTGCATAGTAT
TTCTTTGAAGAGGAAGAGTCTGCATGGTGCATGGATGAAGATTGGGGCTT
CTTCAGTCCTTGTGCTTGTTGTACACTAAAGCATCAGGTTGGGCGGTTTC
GATCGCTCTCTTCTTGCCGAAGCTGCCCCCCTCCCCCGGGCGGTGGCGGC
GGCGCAGGGGGCAACCAGCCCGAGATAGCGGAGCAGCTGCTGGGGCTGGC
TGGGGCCCTGGCCGAGCTGGGGTTCAACCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig839:175899..177929-

>mRNA_H-akashiwo_Contig839.3.1 ID=mRNA_H-akashiwo_Contig839.3.1|Name=mRNA_H-akashiwo_Contig839.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig839:175899..177929- (Heterosigma akashiwo CCMP452)
CCCGGCGGAGGAGCGCGCGCTGCTGCTGAGGGACAAGGCCACGGCCTGCG
CGGCAGCCTACAAGGCCATGGCCACCTGCATCGGGGGCAACCAGCCCGAG
ATAGCGGAGCAGCTGCTGGGGCTGGCTGGGGCCCTGGCCGAGCTGGGGTT
CAACCG
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