mRNA_H-akashiwo_Contig839.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig839.11.1
Unique NamemRNA_H-akashiwo_Contig839.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S3Y730_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y730_HETAK)

HSP 1 Score: 233 bits (593), Expect = 2.300e-74
Identity = 110/116 (94.83%), Postives = 112/116 (96.55%), Query Frame = 1 
Query:    4 KRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 351
            KRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDE+HGGGK ADPHI LMFLMRFLLD AG+LARDE PL
Sbjct:  134 KRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEFHGGGKHADPHIFLMFLMRFLLDMAGLLARDEPPL 249
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BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S4DDB9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDB9_HETAK)

HSP 1 Score: 245 bits (625), Expect = 1.480e-73
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 351
            MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL
Sbjct:  880 MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 996
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BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S3Y6L6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6L6_HETAK)

HSP 1 Score: 234 bits (598), Expect = 1.790e-71
Identity = 111/117 (94.87%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:    1 MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 351
            MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDE+HGGGK ADPHI LMFLMRFLLD AG+LARDE PL
Sbjct:  488 MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEFHGGGKHADPHIFLMFLMRFLLDMAGLLARDEPPL 604
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BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S3XWJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWJ4_HETAK)

HSP 1 Score: 157 bits (398), Expect = 1.690e-42
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:   22 HMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 351
            H+ANHD+WLD+ALQH + ++PNGP+SRLMPLLCSLDPVWQ+RIK AF+IDLN+G  LQGENTP ELM +A       GGGK ADP   LMFL+ F+LDTAGV+A+D   L
Sbjct:  136 HVANHDQWLDIALQHTNFTDPNGPLSRLMPLLCSLDPVWQQRIKRAFSIDLNVGQTLQGENTPRELMVVAA------GGGKDADPRAFLMFLVHFMLDTAGVMAKDRPEL 239
[Close]
BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S3XWE5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWE5_HETAK)

HSP 1 Score: 157 bits (398), Expect = 2.290e-42
Identity = 73/110 (66.36%), Postives = 88/110 (80.00%), Query Frame = 1 
Query:   22 HMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 351
            H+ANHD+WLD+ALQH + ++PNGP+SRLMPLLCSLDPVWQ+RIK AF+IDLN+G  LQGENTP ELM +A       GGGK ADP   LMFL+ F+LDTAGV+A+D   L
Sbjct:  136 HVANHDQWLDIALQHTNFTDPNGPLSRLMPLLCSLDPVWQQRIKRAFSIDLNVGQTLQGENTPRELMVVAA------GGGKDADPRAFLMFLVHFMLDTAGVMAKDRPEL 239
[Close]
BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S4D812_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D812_HETAK)

HSP 1 Score: 106 bits (265), Expect = 1.280e-25
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:   31 NHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDE 342
            +HD+WLD AL+H+D ++  GP+S LMPLLCSLDPVWQ+RIK+AF+ID+ +       + P EL+A    G E        DP +  +FL++F+LD+AGVLARD+
Sbjct:  141 HHDKWLDTALKHMDCNDSEGPLSGLMPLLCSLDPVWQQRIKQAFSIDVRV-------HAPSELVAALAAGVE-----GDVDPQVFRIFLVQFMLDSAGVLARDQ 232
[Close]
BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S4D8A7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8A7_HETAK)

HSP 1 Score: 102 bits (254), Expect = 5.540e-23
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:   31 NHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGE---NTPCELMAIAGGGDEYHGGGKQADPHILLMFLMRFLLDTAGVLARDEAPL 351
            +HD+WLD AL+H+D ++  GP+S LMPLLCSLDPVWQ+RIK+AF+ID+N G   Q +   NTP EL+A           G  ADP    MFL++F LD A   A+D   L
Sbjct:  141 HHDKWLDTALKHMDCNDSEGPLSGLMPLLCSLDPVWQRRIKQAFSIDVN-GRGEQWDVRVNTPSELVAAL-------AAGSDADPKAFRMFLVQFYLDIASAAAKDGPEL 242
[Close]
BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Match: A0A7S4D7Z5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7Z5_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 6.460e-20
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   31 NHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRIKEAFAIDLNMGMLLQGENTPCELMAIA 231
            +HD+WLD+ALQH D  N NGP+S LMPLLCSLDPVWQ RIK+AF+ID+ +       NTP EL+A A
Sbjct:  141 HHDKWLDIALQHTDFGNSNGPLSSLMPLLCSLDPVWQGRIKQAFSIDVRV-------NTPGELVATA 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig839.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A7S3Y730_HETAK2.300e-7494.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4DDB9_HETAK1.480e-73100.00Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y6L6_HETAK1.790e-7194.87Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWJ4_HETAK1.690e-4266.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWE5_HETAK2.290e-4266.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D812_HETAK1.280e-2550.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D8A7_HETAK5.540e-2350.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4D7Z5_HETAK6.460e-2062.69Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig839contigH-akashiwo_Contig839:436956..437721 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size351
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388005.7467344-CDS-H-akashiwo_Contig839:436955..4370161681388005.7467344-CDS-H-akashiwo_Contig839:436955..437016Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig839 436956..437016 -
1681388005.7591531-CDS-H-akashiwo_Contig839:437431..4377211681388005.7591531-CDS-H-akashiwo_Contig839:437431..437721Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig839 437432..437721 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig839.11.1prot_H-akashiwo_Contig839.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig839 436956..437721 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig839.11.1

>prot_H-akashiwo_Contig839.11.1 ID=prot_H-akashiwo_Contig839.11.1|Name=mRNA_H-akashiwo_Contig839.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MKRKLVHHMANHDEWLDLALQHIDLSNPNGPVSRLMPLLCSLDPVWQKRI
KEAFAIDLNMGMLLQGENTPCELMAIAGGGDEYHGGGKQADPHILLMFLM
RFLLDTAGVLARDEAPL
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mRNA from alignment at H-akashiwo_Contig839:436956..437721-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig839.11.1 ID=mRNA_H-akashiwo_Contig839.11.1|Name=mRNA_H-akashiwo_Contig839.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=766bp|location=Sequence derived from alignment at H-akashiwo_Contig839:436956..437721- (Heterosigma akashiwo CCMP452)
ATGAAAAGAAAACTGGTGCACCACATGGCCAACCATGATGAGTGGCTGGA
TCTTGCTCTCCAGCACATCGATCTGAGCAACCCCAATGGGCCAGTGAGTC
GCCTGATGCCCCTATTGTGTTCTCTCGACCCTGTGTGGCAAAAGCGCATC
AAAGAGGCGTTTGCCATCGATCTTAACATGGGAATGCTTCTTCAGGGCGA
GAACACACCCTGTGAGCTGATGGCAATCGCTGGGGGGGGAGATGAGTACC
ATGGAGGTGGAAAGCAGGCAGATCCACACATCCTCCTCATGTAAGTGGGC
TTTTGTGCGTTGCCAGCTCCTCAGTTTAATGGTGTGATCCATATATTAGT
ATGCGAGACTCAATATTGCATATATTACGCACCGTGTATAGGCATTTTCC
CCAGAGTGGATGTATTTACTATAGTACTTCATATCATACTGGATTCATAC
CCAAGGCCTGTAAACAAAATTGAAATTCACCACAAAGAGAACACACATGG
CGCCACAAATACATTCAGGTTGAGGGCACCAGGTGTGAAAGCGAGATGTA
TAGTGCCCTGCCCGCTGGGTGGGGCGCGCTCCCCGCCCAGTATTTTGGGA
GACCAACGGAGCGCCCGCGTCCTATCCCGTCCGCGTCCTCCTCCCACGCG
CGCCCCCCCCCTCCTCCTCCGCGCGGCGCTCTCCCGGCGGTGGGGGCGGG
GGCAGGTTCCTCATGCGCTTCCTGCTGGACACCGCCGGCGTGCTGGCCCG
CGACGAGGCCCCCCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig839:436956..437721-

>mRNA_H-akashiwo_Contig839.11.1 ID=mRNA_H-akashiwo_Contig839.11.1|Name=mRNA_H-akashiwo_Contig839.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig839:436956..437721- (Heterosigma akashiwo CCMP452)
ATGAAAAGAAAACTGGTGCACCACATGGCCAACCATGATGAGTGGCTGGA
TCTTGCTCTCCAGCACATCGATCTGAGCAACCCCAATGGGCCAGTGAGTC
GCCTGATGCCCCTATTGTGTTCTCTCGACCCTGTGTGGCAAAAGCGCATC
AAAGAGGCGTTTGCCATCGATCTTAACATGGGAATGCTTCTTCAGGGCGA
GAACACACCCTGTGAGCTGATGGCAATCGCTGGGGGGGGAGATGAGTACC
ATGGAGGTGGAAAGCAGGCAGATCCACACATCCTCCTCATGTTCCTCATG
CGCTTCCTGCTGGACACCGCCGGCGTGCTGGCCCGCGACGAGGCCCCCCT
G
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