mRNA_H-akashiwo_Contig832.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig832.9.1
Unique NamemRNA_H-akashiwo_Contig832.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 491 bits (1263), Expect = 1.980e-161
Identity = 279/588 (47.45%), Postives = 335/588 (56.97%), Query Frame = 1
Query:    1 YRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCL---------------EGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDD*-------------------------------------------------------------------------------------------WTLITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRL-----FPPK-------------------------------TKKDTNNTEQGKYS----------------------FCGPIMTYLLQPQAETQMKKEAVELSRHMAVYGGVLWHIHDYQGEARRKGARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGD 1272
            YR+ PA  +KAEE+ ++LLKQGVI ESSS FNAPIV+V KK+G+ RMCLDLR+LN IT  +KFPLPT R MFD LA ++YF+S+DMLWAYWS+PLR+ D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+               EGLKPDPKKIEAV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PKGV W DD                                                                                            +TL+TDHK+L+ LK  KNP+GRR RW+MTLMEF  Y TQYRKGKL   ADA+SRL       PK                               T+  T    Q K S                      FCGPIM YL  P     + +E V  SR+M +  G+LWH ++YQG+ RR+G R Q+VVP  L   +L+WAH+G FGAHIGR+KALE L +GY+W N+A D
Sbjct:  103 YRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWLMTLMEFM-YNTQYRKGKLMAPADALSRLPRAGAIQPKEGEADDENIVAAITRAQAGEAQQLKKQTRKRTRMVTEEEPQEKMSETEEKQLGIRPEDISKAQQEDEFCGPIMEYLKTPGGNKTVSREIVHWSRYMILEKGLLWHQYEYQGDNRRRGTRIQLVVPTALHEVMLQWAHQGAFGAHIGRDKALEILRQGYFWVNMARD 689          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A7S3XSK1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSK1_HETAK)

HSP 1 Score: 432 bits (1111), Expect = 2.340e-143
Identity = 206/337 (61.13%), Postives = 263/337 (78.04%), Query Frame = 1
Query: 1129 RFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHLDACTIRSRNIMIFVDQFSGYVELQLMTGPITGKKLSEAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKRKQEEYTHQDLLLEKFRVGEEVMMLAPQNTSTDNLRPKWRGPYKIARVISPAIYRV 2139
            R Q++VP  LQ  +L+WAH+GTFGAHIGR+KALE L +GY+W N+A D+  ++  C  CQ+ K+P P+ R +   +QRPMASQP+QV H DACTIRSRNIMIFVDQFSGYVEL+LM GPITG+ L+EAF+ C++CRHSTP+IAI DNV+YQ  G FPQVLR+LGVK TPVSVYHPQANGRAER+V+ +KKTL+T+  EN TS W KLIPLAAF CNT+ ++ T   PFFL  GR+ VLPGP+N A+  L+ +AEV +P++Y +NL +RILTAF+  T +LK  Q  Y H DLL EKF+VGE V ML P+  + DNL+P W+GP++I  VIS A+Y++
Sbjct:    1 RIQLMVPTALQEIMLQWAHQGTFGAHIGRDKALEILRQGYFWVNMARDMTTFVNSCQTCQRCKNPAPQLRARVTTMQRPMASQPFQVIHGDACTIRSRNIMIFVDQFSGYVELELMRGPITGRSLAEAFLKCIVCRHSTPSIAIMDNVNYQVKGTFPQVLRTLGVKLTPVSVYHPQANGRAERMVSIIKKTLKTMVLEN-TSAWEKLIPLAAFACNTAQHRETKETPFFLVHGRDAVLPGPLNTAVQELRTSAEVADPEIYVQNLRERILTAFKHTTERLKAIQNSYAHPDLLEEKFKVGERVWMLDPRKATGDNLKPMWKGPFEIIHVISAAVYQI 336          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 380 bits (975), Expect = 6.520e-121
Identity = 209/399 (52.38%), Postives = 246/399 (61.65%), Query Frame = 1
Query:    1 YRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCL---------------EGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDD*-------------------------------------------------------------------------------------------WTLITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYR 879
            YR+ PA  +KAEE+ ++LLKQGVI ESSS FNAPIV+V KK+G+ RMCLDLR+LN IT  +KFPLPT R MFD LA ++YF+S+DMLWAYWS+PLR+ D+ KTAFT+RN+KY + VMCFGLTNAPATFSHLVNKVFQG   +FALCFLDDVL +S + F+ HL +L +IFKRM AANLKFKLPKC+               EGLKPDPKKIEAV+ +RRP SKKQVRQ LGLASYYRQFV  F+ IA PLY+LTKD PKGV W DD                                                                                            +TL+TDHK+L+ LK  KNP+GRR RW+MTLMEF  Y TQYR
Sbjct:  103 YRMSPAQLQKAEEITEDLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRPESKKQVRQLLGLASYYRQFVPNFASIAAPLYKLTKDKPKGVLWDDDCEWAFQEIKDSLTSAPVLMYPRWDKPFIVETDASKTGLGAILLQQTQRGTRPIAYASRLCSPTEANYSATELECLGVIYALQQFRCYVMGREFTLVTDHKSLEDLKRIKNPTGRRARWLMTLMEFM-YNTQYR 500          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 334 bits (856), Expect = 1.100e-105
Identity = 165/230 (71.74%), Postives = 185/230 (80.43%), Query Frame = 1
Query:  109 LVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCL---------------EGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDD 753
            +V+KKTG+ RMCLDLRSLN IT  AKFPLPT R MFDQL G++YFSS+DMLWAYWS+PLRD D+HKTAFT+RNKKY + VMCFGLTNAPATFSHLVNKVFQG  +DFALCFLDDVL ++G +FS HL  LE+IF RMI ANLKFKLPKCL               EGLKPDPKKIEA+K ++RP +KKQVRQ LGLASYYRQFV  F+  A PLY LTK  PKGVEWTDD
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRPQTKKQVRQVLGLASYYRQFVPNFAATAAPLYTLTKKEPKGVEWTDD 230          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A5N6N425_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6N425_9ASTR)

HSP 1 Score: 290 bits (741), Expect = 1.870e-81
Identity = 233/785 (29.68%), Postives = 356/785 (45.35%), Query Frame = 1
Query:    1 YRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKC---------------LEGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVE-------------------WTD----D*WTLITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRL---------FPPKTKKDTNNTEQGKYSFCGPIMTYLLQPQAETQMKKEAVELSRHMAVYGGVLWHIH-DYQGEARRK-------GARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQ--------VAHLDACTIRSRNIMIFVDQFSGYVELQLMTGPITGKKLSEAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKR---KQEEYTHQDLLLEKFRVGEEVMMLAPQNTST------DNLRPKWRGPYKIARVISPAIYRV 2139
            YR+ P   ++ +E + ELL+ G I  S S + AP++ V+KK G +R+C+D R LN+IT + ++PLP    +FDQL GS +FS +D+   Y  + +RD D  KTAF  R   Y + VM FGLTNAPA F  L+N+VF  Y + F + F+DD+L  S K    H  +L  + + +    L  K  KC                +G+  DP K+EA+    RP S  +VR FLGLA YYR+FVEGFS +A PL QL +   K  E                   W      +   + TDHK+L+++   K  + R+ RW+  L ++   I QY  GK N  ADA+SR          F P+   D +  E G     G    YL + + E+ +     E  +H A    +L ++    Q E R         G R  +     L+ S+L  AH   F  H G  K    L + +WW+ +  D+A Y+  C  CQQ K    R+   +G LQ P+    W+        V  L     ++  I + VD+ +       +    +  +L+  F   +I  H TP+  + D         +  + ++ G K    + +HPQ +G++ER + T++  LR  A E +   W + + L  F  N S+       PF L  GR+   P   N           ++ P+L     E+  +     A  KLK    +Q+ Y  Q   + +F+VGE V +                L P++ GP++I   +    YR+
Sbjct:  147 YRMAPLELKELKEQLQELLELGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKITIRNRYPLPRIDDLFDQLQGSKFFSKIDLRSGYHQLKIRDQDVSKTAFRTRYGHYEFLVMPFGLTNAPAVFMDLMNRVFHDYLDRFVIVFIDDILVFS-KSKDEHEDHLRTVLETLRKKKLYAKFSKCEFWLEQVAFLGHVVSADGITMDPAKVEAITKWPRPTSVIEVRSFLGLAGYYRRFVEGFSILALPLTQLMRKGLKPYEVNYPTHDLELAAVVFALKIWRHYLYGETCDIFTDHKSLKYIFTQKELNMRQRRWLELLKDYDANI-QYHPGKANVVADALSRKSSGGLACLRFHPQIISDLDKMEVGLQ--FGQSDGYLARLKIESDLITRIKEAQQHDAELWVILQNLEVGKQSEFRVDEQGVVWCGKRLCVPNDATLRESLLSEAHNSPFSIHPGSTKMYRDLRQNFWWSGMKEDVAKYVAHCLTCQQVKIEHQRA---SGMLQ-PLDIPVWKWDDVSMDFVTGLPKTFKKNDAIWVVVDRLTKSAHFLAIQQGFSVSRLANIFTQNIIRLHGTPSSIVSDRDPRFTSHFWKGLQKAYGTKLRFSTAFHPQTDGQSERTIQTLEDMLRACALEWS-GNWDEYLCLVEFAYNNSWQASIDMAPFELLYGRKCRAPICWNEV-----GEKVIEGPELVRITNEKVAI-----AREKLKEAQTRQKSYADQHRRVLEFKVGEHVFLKVSPCRGVRRFGIKGKLSPRFIGPFEILERVGEVSYRL 912          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A8M9PC86_DANRE (uncharacterized protein ftr06 isoform X1 n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PC86_DANRE)

HSP 1 Score: 281 bits (719), Expect = 2.750e-77
Identity = 220/843 (26.10%), Postives = 356/843 (42.23%), Query Frame = 1
Query:    1 YRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKC---------------LEGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPL------------------------------------------------------------------------------------YQLTKDTPKGVEWTDD*WT---------LITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRLFPPKT--------KKDTNNTEQGKYSFCGPIMTYLLQPQAETQMKKEAVELSRHMAVYGG---VLWHIHDYQGEAR-RKGARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHLDAC------TIRSRNIMIFVDQFSGYVE---LQLMTGPITGKKLSEAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKRKQEEYTHQDLLLEKFRVGEEVMMLAPQNTS-TDNLRPKWRGPYKIARVISPAIYRV 2139
            YR+P   +E  +E +D++L Q +I+ S S + +PIVLV KK G  R C+D R LN +++   FPLPT   + + L+GS  FS++D+   YW + +      KTAF      Y +KV+ FGL NAPATF  L+N+V   Y     L +LDD++ +S   F  H+L+L+K+ + +  A L  KLPKC                +G+K DP K EA++    P + K++++FLG++ +Y ++V+ FS+IA+PL                                                                                    Y  T+     V W  + W          ++TDH +L  +  T   + R +RW + L EF  +I +YRKGKLN A DA+SR+  P +         K +  +    +  C   +    Q   E Q   +++   +      G   V+     Y+  +   KG  FQ+ VP+ L+  +L+  H      H GR K  + L++  +W N+  D+++++K CT CQQ+K   P  RK  G LQ+    +PW++  +D        T+ +  +++ VD +S +VE   L+  T  +  + L +  +T    R   P   + D            +     V     + YHPQ N   ERV   +K  + +       + W   +P   +  N++  + TGY P  L   R   L GP    L   +    V       K+L++ +      A  K KR  +            RV      L+  + +       +W GPY+I   + P  YR+
Sbjct:  623 YRLPIHKKEIVKEQIDDMLNQDIIQPSHSPWASPIVLVPKKDGGQRFCVDYRKLNAVSESDAFPLPTVNEILESLSGSGIFSTLDLNSGYWQVSMHPDSMAKTAFVSPFGLYEFKVLPFGLKNAPATFQRLMNRVLADYLGQCCLVYLDDIVVYSAN-FHQHVLDLQKVLRCLQRAGLTLKLPKCHFCLTEIKFLGHIVTTDGVKADPAKTEAIQNFPVPTNLKELQRFLGMSGWYHRYVQNFSDIAEPLNALKKKGVRFQWTAECQVAFDCLKRHLSSPPVLGHPNHAHTFVVYTDASSTGLGAVLAQRPSTFGASEEVLAYASRTLTSAEKNYSTTERECLAVVWAVERWRHYLEGKSFIVVTDHASLLWVFNTTKTNSRLIRWALRLQEFE-FILEYRKGKLNSAPDALSRIDVPDSCPMVASYVPKQSTESIVSLFPLCDEDIWIAQQQDVEIQRIYQSLAEGKQSDEGSGSEFVILEDKVYRKVSNPTKGTHFQIYVPQTLREILLEAYHSNPLSGHFGRYKTQKRLMQVAFWPNMWRDVSDFVKNCTSCQQNK---PECRKPAGKLQQTEVKEPWEMLGVDLMGPLPRSTLGNTQLLVVVDYYSHWVEMFPLRKATAGVIAQTLRKEVLT----RWGVPKFLLSDRGPQFTSEILKDLCSXXXVVQKLTTAYHPQTNF-TERVNQVIKVMISSYVFGEH-NRWDHYLPELRYAINSAVQESTGYSPAELLLHRN--LRGPFELVLEPHQTGLRV------LKDLQEVVKRNVRRAKEKQKRLYDTRRRDVHFTRNDRVWMRAHPLSKASQAFAAKFAARWIGPYRIVEKLGPVNYRI 1446          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A4Y2HJ49_ARAVE (RNA-directed DNA polymerase n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2HJ49_ARAVE)

HSP 1 Score: 272 bits (696), Expect = 1.270e-76
Identity = 209/715 (29.23%), Postives = 334/715 (46.71%), Query Frame = 1
Query:    4 RIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKC---------------LEGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDD*WTLITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRLFPPKTKKDTNNTEQGKYSFCGPIMTYLLQPQ---AETQMKKEAVE-------LSRHMAVYGGVLWH------------------IHDYQGEARRK-------GARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHLD------ACTIRSRNIMIFVDQFSGYVELQLMTGPITGKKLS---EAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLK 1971
            R+P A +++AE +V E++  G+IEESS  + +PIVLV+KK    R C+D R LN+IT K  +PLP      D L GS +FS++D+   YW + ++  D+ KTAF+     + +KVM FGL NAPATF  L+  V +G  ++  L +LDD++   G+ F  HL N+ K+F+R+  ANLK    KC                +G+K DP+K + V    RP +   +R FL L +YYR+F          LY                + L TDH +L+ L   + P G+  RWI  L E+  +  Q+RKG  +G ADA+SR    ++ K   N E+ K+     I   +L  +   + ++++K  +E       L R +       W                   +H   G   RK          +Q+++P+     +L+  H+   G H G  K L    E ++W  +  D+  + +EC  C   K  GP++R K G LQR     P++   LD        T  +R +++ +D F+ + E      PI G++ S   E  +   I R+  P I   D  +      F ++ + LG+  T  +  HP+++G  ER   T+   L     +N T +W   +PL   V  ++ ++ TG  P  +  GR   LP  +       + +    +P+ Y  NLE R+ +    A  ++K
Sbjct:  139 RLPLAKKDEAERLVKEMVDNGIIEESSGPWASPIVLVKKKDESTRFCVDYRKLNEITIKDSYPLPRVDDTMDALNGSQWFSTLDLKSGYWQVEIQPEDKEKTAFSTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLTSEACLVYLDDIII-VGRTFQEHLNNIRKVFQRLQKANLKLSPKKCRFFRKEVSYLGHIISADGVKTDPEKTKVVVDWPRPETVYDLRGFLELCTYYRRF-----HFHHYLYGRK-------------FLLRTDHASLRWLLNFREPEGQIARWIQRLQEYD-FEIQHRKGTSHGNADALSRRPCKESCKHCTNAEK-KFGMETDISVKVLTTEDAWSSSEVQKAQLEDPAIRPILERKLNSEDRPSWQEIAPESPATKRYWALWDSLHLKDGVLYRKWESDDGSSCPWQLILPKSRIQEVLRETHDSASGGHFGVMKTLSKTRERFYWDRLRADVEKWCRECHACGARK--GPKTRTK-GRLQRCNVGAPFERMALDILGPLPVTTKGNRYVLVLMDYFTKWPEAI----PIPGQEASTVAEELVRAWISRYGVPMILHSDLGTNFNSALFTELCKLLGILKTRTTALHPESDGMVERFNRTILNHLSLFVSKNQT-DWDTHLPLFLLVYRSADHEATGCTPADMLFGRTLRLPCDILFG----RPSDTPSSPNEYLNNLEARLESVHAFARERIK 820          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A147BJI2_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A147BJI2_IXORI)

HSP 1 Score: 277 bits (709), Expect = 1.310e-76
Identity = 231/842 (27.43%), Postives = 358/842 (42.52%), Query Frame = 1
Query:    1 YRIPPAHQEKAEEMVDELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKC---------------LEGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVE--WTDD*-------------------------------------------------------------------------------------------WTLITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRLFPPKTKKDTNNTEQGKYSFCGPIMTYLLQPQAETQMKKEAVELSRHMAVYGGVLWHIHD---YQGEARRKGARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHLD------ACTIRSRNIMIFVDQFSGY-VELQLMTGPITGKKLSEAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLR---TLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKRKQE------EYTHQDLLLEKFRVGEEVMMLAPQNTS--TDNLRPKWRGPYKIARVISPAIYRV 2139
            YR+  + +   ++ VD +L + ++  SSS +++P+VL++KK G  R C+D R LN+ITKK  +PLP      D L G+ YFS++D+   YW I + D+DR KTAF   +  Y +KVM FGL NA ATF  +++++ +G      LC+LDDV+  S   FS+HL  L ++ +    A L+    KC                 G++PDP K++AV+   RP   K VR FLGL+SY+R+F+  F+  A+PL  L K   KG    W  D                                                                                            +++ITDH AL  L   K+P GR  RW + L E+   IT Y+ GKL+  AD +SR +P  +    N            ++    +   +  +     +L  +       L+ + +   Y+   R  G  + +V+P+ LQTSIL   H+     H+G  +      + ++WTN+   +  Y+  C  CQ+ K P  R       L  P   QP+    +D        +I +R I + +D  + Y +   L+TG  T   +++  +  +I +H  P   + D           ++L    +     + YHPQ NG  ER+  T+   L    T  H+N    W   +P   F  N+S +  TGY PF+L  G EP+L        T L  + EV   D YA +   R   A + A  +    QE      + TH  +    +  G+ V++  PQ        L P++RGPY+I    S   Y V
Sbjct:  303 YRVSASERRVIQQEVDTMLSKDIVRPSSSPWSSPVVLIKKKDGSWRFCVDYRRLNKITKKDAYPLPRIDDTLDCLHGAEYFSTIDLRSGYWQITVDDSDREKTAFITSDGLYEFKVMPFGLCNARATFERMMDRLLKGLKWTTCLCYLDDVIIFSST-FSSHLTRLAQVLELFRNAGLQLNASKCHFGSRQIKILGHLVDKTGVQPDPDKVKAVQDFPRPRCTKDVRSFLGLSSYFRRFIHNFAHTARPLNNLLK---KGTPFLWQSDEERAFTCLKTALTTSPILGHFDDSAPTELRTDASGHGIGAILAQIQSGHNRVIAYASRTLSSAEKNFTITERECLAVVWAITKFRPYLFGRQFSVITDHHALCWLSSIKDPVGRLGRWALRLQEYDFTIT-YKSGKLHQDADCLSR-YPVDSTPPINEETDIPVLPISNLLDIAQEQNLDPLLHSIISDLRSNTNTPSSSLYSLQNGVLYRQNFRPDGCSWLLVIPKHLQTSILAELHDAPSSGHLGVVRTYARTKQRFYWTNMYRTVKRYVTSCDSCQRRKTPSSRPPGFLQPLNPP--EQPFHRVGVDLLGTFPTSSIGNRWIAVAIDHTTRYAITRPLLTG--TAVDVAQFLLEDIILKHGAPRELLSDRGRPFISRVVSEILNLCSILHKKTTAYHPQTNGLVERLNRTLADMLAMYVTHQHKN----WDVALPYVTFAYNSSPHNTTGYSPFYLLFGHEPLL-----MLDTLLPLHPEVSLSD-YASDAICRAEEARQLARLRTLDSQERQCARYDSTHSFVA---YSPGDLVLIWTPQRQVGLAQKLLPRYRGPYRILNRTSDVNYTV 1121          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A4Y2CFM2_ARAVE (RNA-directed DNA polymerase n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2CFM2_ARAVE)

HSP 1 Score: 268 bits (684), Expect = 2.400e-75
Identity = 211/771 (27.37%), Postives = 342/771 (44.36%), Query Frame = 1
Query:   52 LLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKC---------------LEGLKPDPKKIEAVKGMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVEWTDD*WTLI--TDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRLFPPKTKKDTNNTEQ------------------GKYSFCGPIMTYLLQPQAETQMKK---------------EAVELSRHMAVYGGVLWHIHD------YQGEARRKGARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHLD------ACTIRSRNIMIFVDQFSGYVE---LQLMTGPITGKKLSEAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKRKQEEY--------THQDLLLEKFRVGEEVMMLAPQNTS--TDNLRPKWRGPYKIARVISPAIYRV 2139
            ++  G+IEESS  + +PIVLV+KK G  R C+D R LN+ITKK  +PLP      D L GS +F+++D+   YW + +R  DR KTAFT     + +KVM FGL NAPATF  L+  V +G +++  L +LDD++   G+ F  HL NL K+F+R+  ANLK    KC                EG+K D +KI+A  G        + R     +    +    +    K L  + K       +    W  +  TDH +L+ L   K P  +  RWI  L E+  +  Q+RKG  +G ADA+S     ++ K   N E+                    +S C      L  P  +  ++K               E+    R+ A++  +  H+ D      ++ +      R+Q+++P+     +L+  H+   G H G  K L    E ++W  +  D+ N  +EC  C   K P PR++   G LQR     P +    D        T  +R +++ +D F+ + E   +         ++L  ++I+C    +  P I   D  +      F ++ + LG+  T  +  HP+++G  ER + T+   L      N T +W   +PL      ++ +++TG  P  +  GR   LP  +       + +    +PD Y KNLE R+ +    A  ++K   E          TH       F+ G+ V M  P+     +  L+  W GPY + + ++  +YRV
Sbjct:    1 MVDNGIIEESSGPWASPIVLVKKKDGSTRFCVDYRKLNEITKKDSYPLPRIDDTLDALNGSQWFTTLDLKSGYWQVEIRSEDREKTAFTTGQGLWQFKVMPFGLCNAPATFERLMETVLRGLSSEVCLVYLDDIII-VGRTFEEHLNNLRKVFQRLQKANLKLNPKKCRFFQREVAYLGHVISAEGVKTDSEKIKANTG-------NEERVIAYFSKSLGKPERNYCVTRKELLAIVKSVEHFHHYLYG-WKFLLRTDHASLRWLLNFKEPESQIARWIQRLQEYD-FEIQHRKGTSHGNADALSGRPCKESCKQCTNAEKKFGMKRDISVKVLTTTTVDPWSLCEIQKAQLEDPAIKPILEKKLNSADRPSWQEIAPESPATKRYWALWDTL--HLKDGVFYLKWESDGGNT-CRWQLILPKSRIPEVLRETHDSASGGHFGVMKTLSKTRERFYWDRLRADVENCCRECHACGARKGPKPRTK---GCLQRYNVGAPLERMAFDILGPFPVTTKGNRYVLVLMDYFTKWPEAIPIPDQEASTVAEELVRSWISC----YGVPMILHSDQGTNFNSALFTKLCKLLGILKTRTTALHPESDGMVERFIRTILNHLSLFVSRNQT-DWDTHLPLFLLAYRSAEHEVTGLTPAEMLFGRTLRLPCDILFG----RPSETPSSPDEYMKNLEARLESVHAFARERIKLASERMKTRYDSRATHHH-----FKEGDLVWMYNPKRRRDLSPKLQQNWEGPYTVVKKLNDVVYRV 741          
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Match: A0A164KZR4_9CRUS (RNA-directed DNA polymerase (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164KZR4_9CRUS)

HSP 1 Score: 275 bits (704), Expect = 2.980e-75
Identity = 233/846 (27.54%), Postives = 360/846 (42.55%), Query Frame = 1
Query:   46 DELLKQGVIEESSSEFNAPIVLVQKKTGDLRMCLDLRSLNQITKKAKFPLPTTR*MFDQLAGSWYFSSMDMLWAYWSIPLRDTDRHKTAFTLRNKKYCWKVMCFGLTNAPATFSHLVNKVFQGYNNDFALCFLDDVLAHSGKEFSTHLLNLEKIFKRMIAANLKFKLPKCL---------------EGLKPDPKKIEAVK-------GMRRPASKKQVRQFLGLASYYRQFVEGFSEIAKPLYQLTKDTPKGVE--WTDD*-----------------------------------------------------------------------------WTL--------------ITDHKALQHLKMTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRLFPPKTKKDTNNTEQ----------GKYSFCGPIMTYLLQPQAETQMKKEAV-------ELSRHMAVYGGVLWHIHDYQGEARRKGARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGYWWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHLDACT------IRSRNIMIFVDQFSGYVELQLMTGPITGKK--LSEAFITCVICRHSTPAIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKKTLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPGPVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKRKQEEYT------HQDLLLEKFRVGEEVMMLAP--QNTSTDNLRPKWRGPYKIARVISPAIYRV 2139
            +++L+ G+IE S S + AP+VL++KK G  R C+D R LN++T +  +PLP    +  +L G+ YFS MD+   Y  +PLR  DR KTAF   +  Y +KV+ FGL+N P++F   ++ +  G      L +LDDV+ ++   F THLL L  +   +  A LK K  KC                +G+ PDP KI AV+       G       KQV+ FLGL SYYR+ + GF++IA+PL  LTK   KG    W ++                                                                              W L              ITDH+AL  L+  K+ +GR  RW + L+E+   I +YR G+L+  AD +SR   P T  DTN+ E+              F       L   Q +  + +  +          R   +  G L+ I    G+        ++ VP      +L   H+     H+G  K L  + + + W  +  ++ +Y+K C +CQ  K P     K  G LQ    S+P+Q   +D           ++ I++ VD  + +VEL  +    +GK   +S+  +  ++ RH  P   I D            +LR+LG++    S YHPQ+NG+ ER+  T+   +     E+   +W   +    F  NTS    TG+ PFFL  GREPVLP  +           E Q    YA+ L   + +A      +++  QE+        H +L  +K   G+ V++  P  +N  ++ L  +W GPY + R  +P  Y V
Sbjct:  472 EDMLQAGIIERSDSPWGAPVVLIKKKDGSWRFCVDYRGLNEVTIRDVYPLPRISDILSKLEGAEYFSIMDLQSGYHQLPLRKEDREKTAFITADGLYHFKVLPFGLSNGPSSFQRAMDVILGGLRWSSCLVYLDDVVVYA-PTFETHLLRLNSVLSCLGKAGLKLKGSKCQFAMNTLKVLGHIVSKQGIAPDPDKIAAVRDFPECNQGKTTSNRIKQVQSFLGLCSYYRRHIAGFAKIAQPLTALTK---KGASFLWENEQRNSFTALKKALTSAPILAHPDYESPMIIMSDACGYGIGAVLSQSKDGKEFPLAYASRQLSKAELNYSITEKECLALIWALQKFRGFIWGCKIVIITDHEALCWLRTKKDLAGRLARWSLCLLEYEVEI-RYRSGRLHTNADCLSRF--PLTSADTNDEERCVTIGTLNYANNELFTNEDWDDLTAKQRDNHLWRSIITKLENNRSAGRRFCLKNGKLFKIKHLWGQTY-----LRLCVPSEYTHIVLTKYHDDPTAGHLGIHKTLAKIGQRFHWPGLEKEVVSYVKSCKLCQSRKSP---KIKPAGLLQCIRVSRPFQNVGIDLLGPFTMSHTGNKMIIVAVDYLTKWVELSPLP---SGKADVVSKFLVEHIVLRHGMPEKLISDRGKCFMADITQTILRTLGIQHKTTSSYHPQSNGQVERMNHTLATMISMYISEDQ-KDWDAQLKHICFAYNTSRQDSTGFSPFFLLYGREPVLPIDLLVGTCPQAWVPESQEVLPYAEQLLLDLQSARHIVRRRIQHVQEKQKKGYDARHNNLTFQK---GDLVLVYKPIRKNGRSEKLLHRWIGPYIVLRQTTPVNYEV 1295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig832.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XV63_HETAK1.980e-16147.45Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XSK1_HETAK2.340e-14361.13Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S3XVA0_HETAK6.520e-12152.38Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK1.100e-10571.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5N6N425_9ASTR1.870e-8129.68Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A8M9PC86_DANRE2.750e-7726.10uncharacterized protein ftr06 isoform X1 n=1 Tax=D... [more]
A0A4Y2HJ49_ARAVE1.270e-7629.23RNA-directed DNA polymerase n=1 Tax=Araneus ventri... [more]
A0A147BJI2_IXORI1.310e-7627.43RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
A0A4Y2CFM2_ARAVE2.400e-7527.37RNA-directed DNA polymerase n=1 Tax=Araneus ventri... [more]
A0A164KZR4_9CRUS2.980e-7527.54RNA-directed DNA polymerase (Fragment) n=1 Tax=Dap... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig832contigH-akashiwo_Contig832:446531..449164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog946362.XP_004992232.1
PFAMsChromo,RVP_2,RVT_1,Retrotrans_gag,rve,zf-CCHC,zf-H2C2
Model size2142
Max annot lvl33154|Opisthokonta
KEGG koko:K07497
Hectar predicted targeting categoryother localisation
GOsGO:0000943,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003887,GO:0003964,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006278,GO:0006508,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0019538,GO:0032196,GO:0032197,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0140096,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576
Exons4
Evalue3.46e-35
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
Cds size1344
COG categoryG
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388003.6513324-UTR-H-akashiwo_Contig832:446530..4470871681388003.6513324-UTR-H-akashiwo_Contig832:446530..447087Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig832 446531..447087 +
1681388003.666451-UTR-H-akashiwo_Contig832:447132..4473291681388003.666451-UTR-H-akashiwo_Contig832:447132..447329Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig832 447133..447329 +
1681388003.6817994-UTR-H-akashiwo_Contig832:447602..4476461681388003.6817994-UTR-H-akashiwo_Contig832:447602..447646Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig832 447603..447646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388003.6970093-CDS-H-akashiwo_Contig832:447646..4478051681388003.6970093-CDS-H-akashiwo_Contig832:447646..447805Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig832 447647..447805 +
1681388003.7104743-CDS-H-akashiwo_Contig832:447979..4491641681388003.7104743-CDS-H-akashiwo_Contig832:447979..449164Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig832 447980..449164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig832.9.1prot_H-akashiwo_Contig832.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig832 447647..449164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig832.9.1

>prot_H-akashiwo_Contig832.9.1 ID=prot_H-akashiwo_Contig832.9.1|Name=mRNA_H-akashiwo_Contig832.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=448bp
MTKNPSGRRVRWIMTLMEFSPYITQYRKGKLNGAADAISRLFPPKTKKDT
NNTEQGKYSFCGPIMTYLLQPQAETQMKKEAVELSRHMAVYGGVLWHIHD
YQGEARRKGARFQMVVPRILQTSILKWAHEGTFGAHIGREKALEALLEGY
WWTNIAGDLANYIKECTVCQQHKDPGPRSRKKTGNLQRPMASQPWQVAHL
DACTIRSRNIMIFVDQFSGYVELQLMTGPITGKKLSEAFITCVICRHSTP
AIAIYDNVSYQAYGCFPQVLRSLGVKPTPVSVYHPQANGRAERVVATVKK
TLRTLAHENATSEWTKLIPLAAFVCNTSYNKMTGYKPFFLCTGREPVLPG
PVNAALTALKNNAEVQNPDLYAKNLEQRILTAFEAATGKLKRKQEEYTHQ
DLLLEKFRVGEEVMMLAPQNTSTDNLRPKWRGPYKIARVISPAIYRVT
back to top

mRNA from alignment at H-akashiwo_Contig832:446531..449164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig832.9.1 ID=mRNA_H-akashiwo_Contig832.9.1|Name=mRNA_H-akashiwo_Contig832.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2634bp|location=Sequence derived from alignment at H-akashiwo_Contig832:446531..449164+ (Heterosigma akashiwo CCMP452)
TACCGTATACCTCCAGCTCACCAAGAGAAGGCAGAAGAGATGGTAGATGA ACTGCTCAAACAAGGGGTCATTGAAGAATCATCAAGCGAGTTCAATGCAC CAATAGTGCTAGTCCAAAAGAAGACAGGGGACTTGAGAATGTGCTTAGAC TTACGTTCTCTCAACCAAATTACAAAGAAGGCGAAGTTTCCCTTGCCTAC AACAAGATAAATGTTTGATCAACTAGCAGGCAGTTGGTACTTCTCAAGCA TGGATATGCTATGGGCATATTGGAGCATACCACTCAGAGATACAGACAGG CATAAAACAGCATTTACACTAAGGAACAAGAAATATTGTTGGAAGGTGAT GTGTTTTGGACTTACAAACGCACCAGCAACATTTTCACATTTGGTGAACA AGGTCTTCCAAGGATACAACAACGACTTTGCATTATGTTTCCTGGACGAC GTGCTAGCTCACTCAGGAAAGGAATTCAGTACACACTTACTGAACTTGGA AAAGATTTTCAAGAGGATGATAGCAGCTAACCTGAAGTTCAAGTTGCCGA AATGTTTGTTTGGAGCTTCACAAGTACCATGGCTGGGGCATATCATCACA AGAGAAGGGTTGAAACCTGACCCCAAGAAGATAGAGGCAGTGAAAGGAAT GAGAAGACCTGCATCGAAAAAACAAGTTAGACAATTTCTAGGGCTGGCAT CCTACTACAGACAGTTCgtAGAGGGATTTTCAGAAATTGCTAAACCACTA TACCAATTGACGAAGGATACACCAAAAGGGGTAGAATGGACGGACGACTG TGAATGGTCATGGCAGACACTAAAAGACAAATTAGTGTCAACACCGATAC TGATATACCCAAGGTTCGACAGACCCTTCATAGTGGAAACGGATGCATCA GGACAAGGATTGGGAGCAGTATTATCACAGGAAACAGATCATGGAAGAAA ACCAGTAGCATATGCCAGCAGAGTATGTAGCTCTACTGAAGCCAATTACA GTGCTACAGAGCTGGAATGCTTGGGAGTAATATATGCAGTGCAACAATTC AGATGTTACATTCTGGGAAGAGAATGGACATTGATTACGGATCACAAAGC CCTCCAACACCTCAAGATGACGAAAAACCCATCAGGGAGACGGGTCAGAT GGATTATGACATTAATGGAGTTTAGTCCATATATTACACAGTACAGAAAA GGAAAATTAAACGGAGCAGCAGACGCGATATCAAGGTTGTTTCCTCCAAA GACCAAAAAGGACACAAACAACACGGTAGCTGCAATAACGAGGGCTCAAG CGAAACACAAAGAGGACATAACAAGAGATCCAGGGAATATGGGCATAACA GAAGACTCAGATAACATGAGCAGAACAGCGAACCCGGTTAATGTGGACGC AAAGGAACAAAAAACGGACACATTACAAGCAGCAAAAGATATAGCGAAGG AACAGGGAAAATACTCCTTCTGCGGACCAATCATGACATACCTGTTACAA CCGCAAGCTGAAACACAAATGAAAAAGGAAGCAGTTGAGCTAAGCAGACA CATGGCAGTATACGGGGGTGTACTATGGCACATACATGACTATCAAGGAG AAGCCAGAAGAAAAGGAGCCAGATTCCAAATGGTAGTGCCACGGATACTA CAAACCTCAATACTAAAGTGGGCCCATGAAGGAACATTTGGAGCACACAT CGGAAGAGAAAAGGCACTGGAAGCACTACTGGAAGGATATTGGTGGACAA ATATAGCAGGAGACTTAGCGAACTACATCAAGGAATGTACAGTATGCCAA CAACATAAGGACCCAGGACCCAGGTCACGAAAGAAAACTGGAAATTTACA AAGACCGATGGCAAGTCAGCCATGGCAAGTTGCACATTTGGATGCATGCA CAATTAGATCACGAAATATAATGATATTCGTAGATCAATTTTCAGGATAT GTGGAACTACAGCTGATGACTGGACCAATCACGGGCAAGAAATTGTCGGA AGCATTCATTACGTGCGTGATATGCAGACATTCCACACCAGCCATAGCCA TTTATGACAACGTGAGCTACCAGGCTTACGGATGTTTTCCCCAAGTACTA CGCAGCTTAGGGGTAAAACCAACACCAGTGTCAGTGTATCATCCACAGGC AAACGGAAGAGCAGAGCGAGTGGTGGCCACGGTCAAGAAAACATTGAGAA CACTAGCCCATGAGAACGCAACAAGTGAATGGACTAAGCTCATTCCACTA GCAGCCTTTGTATGCAACACATCGTATAACAAGATGACAGGGTACAAGCC ATTTTTCTTGTGCACAGGGAGAGAACCAGTTCTACCCGGACCTGTAAATG CAGCCCTGACAGCACTCAAGAACAACGCAGAAGTACAAAACCCTGACTTG TACGCGAAGAACCTGGAACAGAGGATCTTAACAGCATTTGAAGCAGCGAC AGGAAAATTGAAGAGGAAACAGGAGGAATACACCCATCAAGATTTGCTCC TGGAAAAGTTCAGAGTAGGCGAGGAAGTAATGATGTTGGCACCACAAAAC ACGTCAACAGACAATTTACGACCCAAGTGGAGAGGCCCGTACAAAATTGC TAGAGTAATCAGCCCAGCGATATACAGAGTTACG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig832:446531..449164+

>mRNA_H-akashiwo_Contig832.9.1 ID=mRNA_H-akashiwo_Contig832.9.1|Name=mRNA_H-akashiwo_Contig832.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1344bp|location=Sequence derived from alignment at H-akashiwo_Contig832:446531..449164+ (Heterosigma akashiwo CCMP452)
ATGACGAAAAACCCATCAGGGAGACGGGTCAGATGGATTATGACATTAAT
GGAGTTTAGTCCATATATTACACAGTACAGAAAAGGAAAATTAAACGGAG
CAGCAGACGCGATATCAAGGTTGTTTCCTCCAAAGACCAAAAAGGACACA
AACAACACGGAACAGGGAAAATACTCCTTCTGCGGACCAATCATGACATA
CCTGTTACAACCGCAAGCTGAAACACAAATGAAAAAGGAAGCAGTTGAGC
TAAGCAGACACATGGCAGTATACGGGGGTGTACTATGGCACATACATGAC
TATCAAGGAGAAGCCAGAAGAAAAGGAGCCAGATTCCAAATGGTAGTGCC
ACGGATACTACAAACCTCAATACTAAAGTGGGCCCATGAAGGAACATTTG
GAGCACACATCGGAAGAGAAAAGGCACTGGAAGCACTACTGGAAGGATAT
TGGTGGACAAATATAGCAGGAGACTTAGCGAACTACATCAAGGAATGTAC
AGTATGCCAACAACATAAGGACCCAGGACCCAGGTCACGAAAGAAAACTG
GAAATTTACAAAGACCGATGGCAAGTCAGCCATGGCAAGTTGCACATTTG
GATGCATGCACAATTAGATCACGAAATATAATGATATTCGTAGATCAATT
TTCAGGATATGTGGAACTACAGCTGATGACTGGACCAATCACGGGCAAGA
AATTGTCGGAAGCATTCATTACGTGCGTGATATGCAGACATTCCACACCA
GCCATAGCCATTTATGACAACGTGAGCTACCAGGCTTACGGATGTTTTCC
CCAAGTACTACGCAGCTTAGGGGTAAAACCAACACCAGTGTCAGTGTATC
ATCCACAGGCAAACGGAAGAGCAGAGCGAGTGGTGGCCACGGTCAAGAAA
ACATTGAGAACACTAGCCCATGAGAACGCAACAAGTGAATGGACTAAGCT
CATTCCACTAGCAGCCTTTGTATGCAACACATCGTATAACAAGATGACAG
GGTACAAGCCATTTTTCTTGTGCACAGGGAGAGAACCAGTTCTACCCGGA
CCTGTAAATGCAGCCCTGACAGCACTCAAGAACAACGCAGAAGTACAAAA
CCCTGACTTGTACGCGAAGAACCTGGAACAGAGGATCTTAACAGCATTTG
AAGCAGCGACAGGAAAATTGAAGAGGAAACAGGAGGAATACACCCATCAA
GATTTGCTCCTGGAAAAGTTCAGAGTAGGCGAGGAAGTAATGATGTTGGC
ACCACAAAACACGTCAACAGACAATTTACGACCCAAGTGGAGAGGCCCGT
ACAAAATTGCTAGAGTAATCAGCCCAGCGATATACAGAGTTACG
back to top