mRNA_H-akashiwo_Contig83.39.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig83.39.1
Unique NamemRNA_H-akashiwo_Contig83.39.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig83.39.1 vs. uniprot
Match: A0A7S4MWK1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWK1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.020e-13
Identity = 39/68 (57.35%), Postives = 48/68 (70.59%), Query Frame = 2 
Query:    2 HAGLPNLA--EGGAPRFLLAVTFRNPAARGALGHRPNLRPGYVGRHTLASFQAELAGPAPFAAAGDGV 199
            HAGLPN+   EGG  R +LAVTF NPAA   LGH+ N+R GYVG++T+   + ELA   PFA AGDG+
Sbjct:  253 HAGLPNMKAEEGGKKRIILAVTFCNPAATEELGHKSNMRQGYVGKYTMNDLRRELASSEPFALAGDGL 320
[Close]
BLAST of mRNA_H-akashiwo_Contig83.39.1 vs. uniprot
Match: A0A7S0CF51_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CF51_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 5.370e-13
Identity = 39/61 (63.93%), Postives = 42/61 (68.85%), Query Frame = 2 
Query:    2 HAGLPNLAE--GGAPRFLLAVTFRNPAARGALGHRPNLRPGYVGRHTLASFQAELAGPAPF 178
            H GLPNLAE  GGA R L A+TFRN  A+  LGH+P LRP YVG HTL SFQ EL    PF
Sbjct:  111 HCGLPNLAEIEGGASRLLFALTFRNLHAKEELGHKPCLRPEYVGIHTLDSFQEELRSSTPF 171
[Close]
BLAST of mRNA_H-akashiwo_Contig83.39.1 vs. uniprot
Match: A0A7R9ZCB8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCB8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 5.090e-12
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 2 
Query:    2 HAGLPNLAE--GGAPRFLLAVTFRNPAARGALGHRPNLRPGYVGRHTLASFQAELAGPAPFAAAGDGV 199
            HAGL N  E  GG+ R +LA+TFRNP A   LGH+ N+R GYVG++TL   + E+    PFA AGDG+
Sbjct:   72 HAGLTNQVEEEGGSKRIILALTFRNPEATEELGHKSNMRRGYVGKYTLDDVRREVERTEPFATAGDGL 139
[Close]
BLAST of mRNA_H-akashiwo_Contig83.39.1 vs. uniprot
Match: A0A0M0JVV4_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVV4_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 4.090e-8
Identity = 36/63 (57.14%), Postives = 39/63 (61.90%), Query Frame = 2 
Query:    2 HAGLPNLAEG--GAPRFLLAVTFRNPAARGALGHRPNLRPGYVGRH-TLASFQAELAGPAPFA 181
            HAG  N  EG  G+ R L  +TFRN  AR ALGH PNLRPGY  R  TLA  + ELA   PFA
Sbjct:  315 HAGTANFPEGQGGSQRLLFILTFRNRKARQALGHEPNLRPGYRNRGITLADMRRELASDEPFA 377
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig83.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4MWK1_9STRA2.020e-1357.35Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S0CF51_9STRA5.370e-1363.93Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9ZCB8_9STRA5.090e-1252.94Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A0M0JVV4_9EUKA4.090e-857.14Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig83contigH-akashiwo_Contig83:1536515..1537044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size532
Hectar predicted targeting categoryother localisation
Exons1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.866775-CDS-H-akashiwo_Contig83:1536514..15369311681388000.866775-CDS-H-akashiwo_Contig83:1536514..1536931Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig83 1536515..1536931 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.8771946-UTR-H-akashiwo_Contig83:1536931..15370441681388000.8771946-UTR-H-akashiwo_Contig83:1536931..1537044Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig83 1536932..1537044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig83.39.1prot_H-akashiwo_Contig83.39.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig83 1536515..1536931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig83.39.1

>prot_H-akashiwo_Contig83.39.1 ID=prot_H-akashiwo_Contig83.39.1|Name=mRNA_H-akashiwo_Contig83.39.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=139bp
ARRPAQPGRGGRAALPAGGHLPQPGRAGRPGPPAQPAARVRGPAHAGQLP
GGAGRAGAVRRRGRRRSGRLLLLRDVSGGDGNGHALSEGGETDTQHHRWR
HHHHHCRCKRRGNKWNNTGGKKYRIITTAGKEDIFFSI*
back to top

mRNA from alignment at H-akashiwo_Contig83:1536515..1537044+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig83.39.1 ID=mRNA_H-akashiwo_Contig83.39.1|Name=mRNA_H-akashiwo_Contig83.39.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=530bp|location=Sequence derived from alignment at H-akashiwo_Contig83:1536515..1537044+ (Heterosigma akashiwo CCMP452)
GCACGCCGGCCTGCCCAACCTGGCCGAGGGGGGCGCGCCGCGCTTCCTGC
TGGCGGTCACCTTCCGCAACCCGGCCGCGCGGGGCGCCCTGGGCCACCGG
CCCAACCTGCGGCCCGGGTACGTGGGCCGGCACACGCTGGCCAGCTTCCA
GGCGGAGCTGGCCGGGCCGGCGCCGTTCGCCGCCGCGGGCGACGGCGTTC
TGGCCGCCTCCTCCTCCTCCGCGACGTGAGCGGCGGCGATGGCAACGGCC
ACGCCCTGTCGGAGGGAGGAGAGACCGACACCCAGCACCACCGCTGGCGC
CACCATCATCATCACTGTCGGTGCAAGAGAAGGGGCAACAAATGGAACAA
CACAGGAGGGAAGAAGTATAGAATAATCACAACGGCAGGGAAGGAGGACA
TTTTTTTTTCAATTTAGTTGCAGATCAGCTGCTGACTTAGCAGGGCCTTC
TGTCTTTCACCAGCTGGTAGGGAGCAAAGTAATGTAATGGTGGTGAGTGA
TGATCATAAAATACTGATGATTTAGCTTTA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig83:1536515..1537044+

>mRNA_H-akashiwo_Contig83.39.1 ID=mRNA_H-akashiwo_Contig83.39.1|Name=mRNA_H-akashiwo_Contig83.39.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=417bp|location=Sequence derived from alignment at H-akashiwo_Contig83:1536515..1537044+ (Heterosigma akashiwo CCMP452)
GCACGCCGGCCTGCCCAACCTGGCCGAGGGGGGCGCGCCGCGCTTCCTGC
TGGCGGTCACCTTCCGCAACCCGGCCGCGCGGGGCGCCCTGGGCCACCGG
CCCAACCTGCGGCCCGGGTACGTGGGCCGGCACACGCTGGCCAGCTTCCA
GGCGGAGCTGGCCGGGCCGGCGCCGTTCGCCGCCGCGGGCGACGGCGTTC
TGGCCGCCTCCTCCTCCTCCGCGACGTGAGCGGCGGCGATGGCAACGGCC
ACGCCCTGTCGGAGGGAGGAGAGACCGACACCCAGCACCACCGCTGGCGC
CACCATCATCATCACTGTCGGTGCAAGAGAAGGGGCAACAAATGGAACAA
CACAGGAGGGAAGAAGTATAGAATAATCACAACGGCAGGGAAGGAGGACA
TTTTTTTTTCAATTTAG
back to top