mRNA_H-akashiwo_Contig83.37.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig83.37.1
Unique NamemRNA_H-akashiwo_Contig83.37.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig83.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig83contigH-akashiwo_Contig83:1520781..1521195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size415
Hectar predicted targeting categorysignal peptide
Exons1
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.8233454-UTR-H-akashiwo_Contig83:1520780..15208351681388000.8233454-UTR-H-akashiwo_Contig83:1520780..1520835Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig83 1520781..1520835 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388000.8351269-CDS-H-akashiwo_Contig83:1520835..15211951681388000.8351269-CDS-H-akashiwo_Contig83:1520835..1521195Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig83 1520836..1521195 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig83.37.1prot_H-akashiwo_Contig83.37.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig83 1520836..1521195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig83.37.1

>prot_H-akashiwo_Contig83.37.1 ID=prot_H-akashiwo_Contig83.37.1|Name=mRNA_H-akashiwo_Contig83.37.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=120bp
MKNVSNLLLGGKTVYLLLLLRNSLGFAPAPTESCCSQRPRPSECSTHHSL
ISSLGMVGSSDRDGLGAARALLFQDQHRAMTDQAEVEGELLNQPMPELEL
CAARQSARRSSGSSAASRGG
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mRNA from alignment at H-akashiwo_Contig83:1520781..1521195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig83.37.1 ID=mRNA_H-akashiwo_Contig83.37.1|Name=mRNA_H-akashiwo_Contig83.37.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=415bp|location=Sequence derived from alignment at H-akashiwo_Contig83:1520781..1521195+ (Heterosigma akashiwo CCMP452)
GCCCACCAGGAGCTGATTGAATGCAGTGGTGTCCGAAAAAGGCACTCAAA
CAGCGATGAAAAATGTCTCGAACTTATTACTTGGGGGGAAAACTGTGTAC
CTTTTGTTACTTCTTCGGAACTCCTTAGGTTTTGCGCCAGCGCCAACTGA
GAGCTGCTGTTCACAAAGGCCAAGGCCATCTGAGTGCTCGACACACCACA
GTCTCATCTCTTCTCTGGGCATGGTGGGTAGCAGCGATAGAGACGGCCTT
GGGGCTGCGAGGGCTCTACTCTTTCAGGACCAGCATCGGGCTATGACTGA
TCAAGCCGAGGTGGAGGGCGAGCTGCTGAACCAGCCCATGCCTGAGCTGG
AGCTTTGTGCTGCAAGACAAAGCGCCAGGCGGTCGTCTGGGTCATCAGCA
GCAAGCAGGGGAGGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig83:1520781..1521195+

>mRNA_H-akashiwo_Contig83.37.1 ID=mRNA_H-akashiwo_Contig83.37.1|Name=mRNA_H-akashiwo_Contig83.37.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=360bp|location=Sequence derived from alignment at H-akashiwo_Contig83:1520781..1521195+ (Heterosigma akashiwo CCMP452)
ATGAAAAATGTCTCGAACTTATTACTTGGGGGGAAAACTGTGTACCTTTT
GTTACTTCTTCGGAACTCCTTAGGTTTTGCGCCAGCGCCAACTGAGAGCT
GCTGTTCACAAAGGCCAAGGCCATCTGAGTGCTCGACACACCACAGTCTC
ATCTCTTCTCTGGGCATGGTGGGTAGCAGCGATAGAGACGGCCTTGGGGC
TGCGAGGGCTCTACTCTTTCAGGACCAGCATCGGGCTATGACTGATCAAG
CCGAGGTGGAGGGCGAGCTGCTGAACCAGCCCATGCCTGAGCTGGAGCTT
TGTGCTGCAAGACAAAGCGCCAGGCGGTCGTCTGGGTCATCAGCAGCAAG
CAGGGGAGGT
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