mRNA_H-akashiwo_Contig81.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.19.1
Unique NamemRNA_H-akashiwo_Contig81.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig81.19.1 vs. uniprot
Match: A0A0G4HAE1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HAE1_9ALVE)

HSP 1 Score: 301 bits (771), Expect = 4.470e-97
Identity = 154/289 (53.29%), Postives = 195/289 (67.47%), Query Frame = 1 
Query:    1 ENLIGEEMVTDDESAARLADRCIAEAKRLWESKANWTPVEIMDPDVFVETIPLKGSYGNSGVHLVRAKGVIDAPAEKLHKFKISREGFQSIDEYLVNHRNCGHFKWVTRPEFDDVPVPEKGTDWPEGSPYQLMMNRVEWKYPIKRREFVALDIVDDKEMILISKSSLSPLRPGGSRYQDVVPMDEKTKYVDPVDPVARPLVRAVQYYASRITPINDNQCQLEVVTWGEMCDNYSSWWVNLFNAHVFITPKFDRFKRVMGGESIFEESKIMDNAWRLLKIIPN---LKPD 858
            E+LIGEE+VTDD SA+ L+DRC++E  RL +S+  W   E+      VET    G+YG SGV +VR  G IDA A+   ++++SREGFQ IDEYLVNHR    +KW+TRPE +             G  Y+LMMNRVEW+YP K REFVALD V   E +LISKS+L P RPGGSRYQD +           VDP   P VRAVQYY S++ P+  N+C L +VTWGEMCDNYS+WWVN FN ++FITPKF RF+  M G++++EES I++NAW +LK+  N   LKPD
Sbjct:  149 EDLIGEELVTDDMSASLLSDRCMSELDRLIKSEDGWQSEEL--EGCVVETKKTHGAYGLSGVDIVRGVGEIDASADDFFEYQVSREGFQCIDEYLVNHRKVDQYKWLTRPELES------------GKDYELMMNRVEWRYPFKSREFVALDTVHRPERVLISKSALHPERPGGSRYQDALE----------VDPPGSPFVRAVQYYGSKVEPVGPNKCLLYMVTWGEMCDNYSAWWVNQFNKYLFITPKFRRFREAMSGKTVWEESNIVNNAWDILKLKHNMGGLKPD 413
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BLAST of mRNA_H-akashiwo_Contig81.19.1 vs. uniprot
Match: D7G761_ECTSI (Imm downregulated 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G761_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 5.250e-95
Identity = 153/287 (53.31%), Postives = 199/287 (69.34%), Query Frame = 1 
Query:    1 ENLIGEEMVTDDESAARLADRCIAEAKRLWESKANWTPVEIMDPDVFVETIPLKGSYGNSGVHLVRAKGVIDAPAEKLHKFKISREGFQSIDEYLVNHRNCGHFKWVTRPEFDDVPVPEKGTDWPEGSPYQLMMNRVEWKYPIKRREFVALDIVDDKEMILISKSSLSPLRPGGSRYQDVVPMDEKTKYVDPVDPVARPLVRAVQYYASRITPINDNQCQLEVVTWGEMCDNYSSWWVNLFNAHVFITPKFDRFKRVM-GGESIFEESKIMDNAWRLLKIIPNLKPD 858
            E+LIGEEMV DD +A+ LAD+CI EA+RL+ S   WT V + D  +FVET  + G Y  SGV +VR  G I+A  +  + F++SREGFQSIDEYL NHRN    +WVT+P+++++              Y+LM NRVEW YP + REFVALDI+D    ILISKS+L P RPGGSRYQ  VP+DE T YV           RAVQYYAS++ P+ D +C L +VTWGEMCD+Y+++W+N FNAHVFITPK+ RF+RVM  GE +FE S I++ AW+L K++  +KPD
Sbjct:   96 EHLIGEEMVKDDATASALADKCILEAERLFASDEGWTKV-LEDDGIFVETKDVAGPYLKSGVRVVRGLGAINADCDDFYNFQVSREGFQSIDEYLENHRNVERHEWVTQPQYENM------------KDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALHPDRPGGSRYQTEVPLDE-TDYV-----------RAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKLLM-IKPD 356
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4HAE1_9ALVE4.470e-9753.29Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
D7G761_ECTSI5.250e-9553.31Imm downregulated 15 n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:767978..768835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G761
Model size858
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.6e-92
EggNOG OGs2DZK2@1|root,2S73F@2759|Eukaryota
Cds size837
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.916181-CDS-H-akashiwo_Contig81:767977..7688141681387993.916181-CDS-H-akashiwo_Contig81:767977..768814Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 767978..768814 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.9258099-UTR-H-akashiwo_Contig81:768814..7688351681387993.9258099-UTR-H-akashiwo_Contig81:768814..768835Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 768815..768835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.19.1prot_H-akashiwo_Contig81.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 767978..768814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.19.1

>prot_H-akashiwo_Contig81.19.1 ID=prot_H-akashiwo_Contig81.19.1|Name=mRNA_H-akashiwo_Contig81.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=279bp
MVTDDESAARLADRCIAEAKRLWESKANWTPVEIMDPDVFVETIPLKGSY
GNSGVHLVRAKGVIDAPAEKLHKFKISREGFQSIDEYLVNHRNCGHFKWV
TRPEFDDVPVPEKGTDWPEGSPYQLMMNRVEWKYPIKRREFVALDIVDDK
EMILISKSSLSPLRPGGSRYQDVVPMDEKTKYVDPVDPVARPLVRAVQYY
ASRITPINDNQCQLEVVTWGEMCDNYSSWWVNLFNAHVFITPKFDRFKRV
MGGESIFEESKIMDNAWRLLKIIPNLKPD
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mRNA from alignment at H-akashiwo_Contig81:767978..768835-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.19.1 ID=mRNA_H-akashiwo_Contig81.19.1|Name=mRNA_H-akashiwo_Contig81.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=858bp|location=Sequence derived from alignment at H-akashiwo_Contig81:767978..768835- (Heterosigma akashiwo CCMP452)
GAGAACCTCATTGGCGAGGAAATGGTTACTGATGACGAATCAGCCGCACG
GCTGGCTGACAGATGCATTGCTGAAGCAAAACGCTTGTGGGAATCCAAGG
CCAACTGGACTCCTGTGGAAATCATGGACCCTGATGTTTTTGTTGAAACC
ATCCCCCTTAAAGGCTCGTACGGCAATTCAGGAGTTCATCTCGTTCGTGC
AAAAGGTGTGATTGACGCCCCTGCAGAAAAGCTGCACAAATTCAAGATCA
GCAGAGAGGGTTTTCAATCTATCGACGAGTATCTGGTAAACCACAGAAAT
TGCGGTCACTTCAAGTGGGTGACTAGGCCTGAGTTTGACGACGTGCCAGT
CCCCGAGAAGGGAACTGACTGGCCCGAAGGCTCCCCTTACCAGCTCATGA
TGAACAGAGTGGAGTGGAAGTATCCTATCAAAAGACGTGAATTTGTGGCT
CTGGATATTGTGGATGACAAGGAAATGATTTTGATCTCTAAGAGCTCCCT
GTCCCCTCTTCGCCCTGGGGGTAGCCGTTATCAGGACGTTGTTCCTATGG
ACGAGAAGACCAAGTACGTGGACCCTGTGGACCCTGTGGCCCGCCCTCTC
GTTCGTGCTGTACAGTACTATGCCTCCCGCATCACTCCTATCAATGATAA
CCAGTGCCAGTTGGAAGTGGTGACATGGGGAGAGATGTGTGACAACTACT
CCTCTTGGTGGGTGAACTTGTTCAATGCTCATGTTTTCATCACTCCTAAA
TTTGACCGGTTCAAAAGAGTAATGGGTGGTGAGTCCATCTTTGAGGAGTC
AAAGATCATGGACAATGCATGGCGCTTGTTGAAGATTATCCCAAACCTAA
AGCCTGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig81:767978..768835-

>mRNA_H-akashiwo_Contig81.19.1 ID=mRNA_H-akashiwo_Contig81.19.1|Name=mRNA_H-akashiwo_Contig81.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=837bp|location=Sequence derived from alignment at H-akashiwo_Contig81:767978..768835- (Heterosigma akashiwo CCMP452)
ATGGTTACTGATGACGAATCAGCCGCACGGCTGGCTGACAGATGCATTGC
TGAAGCAAAACGCTTGTGGGAATCCAAGGCCAACTGGACTCCTGTGGAAA
TCATGGACCCTGATGTTTTTGTTGAAACCATCCCCCTTAAAGGCTCGTAC
GGCAATTCAGGAGTTCATCTCGTTCGTGCAAAAGGTGTGATTGACGCCCC
TGCAGAAAAGCTGCACAAATTCAAGATCAGCAGAGAGGGTTTTCAATCTA
TCGACGAGTATCTGGTAAACCACAGAAATTGCGGTCACTTCAAGTGGGTG
ACTAGGCCTGAGTTTGACGACGTGCCAGTCCCCGAGAAGGGAACTGACTG
GCCCGAAGGCTCCCCTTACCAGCTCATGATGAACAGAGTGGAGTGGAAGT
ATCCTATCAAAAGACGTGAATTTGTGGCTCTGGATATTGTGGATGACAAG
GAAATGATTTTGATCTCTAAGAGCTCCCTGTCCCCTCTTCGCCCTGGGGG
TAGCCGTTATCAGGACGTTGTTCCTATGGACGAGAAGACCAAGTACGTGG
ACCCTGTGGACCCTGTGGCCCGCCCTCTCGTTCGTGCTGTACAGTACTAT
GCCTCCCGCATCACTCCTATCAATGATAACCAGTGCCAGTTGGAAGTGGT
GACATGGGGAGAGATGTGTGACAACTACTCCTCTTGGTGGGTGAACTTGT
TCAATGCTCATGTTTTCATCACTCCTAAATTTGACCGGTTCAAAAGAGTA
ATGGGTGGTGAGTCCATCTTTGAGGAGTCAAAGATCATGGACAATGCATG
GCGCTTGTTGAAGATTATCCCAAACCTAAAGCCTGAT
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