mRNA_H-akashiwo_Contig808.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig808.3.1
Unique NamemRNA_H-akashiwo_Contig808.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig808.3.1 vs. uniprot
Match: A0A7S4VTH5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VTH5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.350e-12
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    4 DIKALLSGGGNPLGADSSGLNSLHYVVWNGHIDCLKLLLANDMGVNEE-GKKESCINSQSELGY 192
            ++K LL+GG NP   D  GL +LHY VWNGH+ C+++L+AN  G + E G   S IN QS+ GY
Sbjct:   17 ELKNLLAGGANPCSVDEKGLTALHYAVWNGHLQCVEILVANHWGKHHETGDVCSSINLQSKTGY 80
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BLAST of mRNA_H-akashiwo_Contig808.3.1 vs. uniprot
Match: A0A482S1M6_9ARCH (Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1M6_9ARCH)

HSP 1 Score: 65.9 bits (159), Expect = 1.390e-12
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 DDIKALLSGGGNPLGADSSGLNSLHYVVWNGHIDCLKLLLANDMGVNEEGKKESCINSQSELG 189
            ++++ L+    N    D  GL +LHY VWNGH++C+KLL+ N  GV+ +G+K +C+N +S +G
Sbjct:   16 EELEVLVKARANVCSIDEWGLTALHYAVWNGHVECVKLLVFNSHGVDSKGQKTTCLNMKSCIG 78
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BLAST of mRNA_H-akashiwo_Contig808.3.1 vs. uniprot
Match: F0YDZ5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDZ5_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.540e-9
Identity = 24/62 (38.71%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    7 IKALLSGGGNPLGADSSGLNSLHYVVWNGHIDCLKLLLANDMGVNEEGKKESCINSQSELGY 192
            ++ L+ GGGNP  +D +GL  LH+  WNGH++C++LL+ ND+GV     +E     +++  Y
Sbjct:   18 LRELILGGGNPCSSDENGLCPLHFATWNGHVECVELLVVNDLGVASAPSEEDLKKLRAKEDY 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig808.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4VTH5_9STRA1.350e-1250.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A482S1M6_9ARCH1.390e-1241.27Ankyrin repeat protein n=1 Tax=archaeon TaxID=1906... [more]
F0YDZ5_AURAN1.540e-938.71Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig808contigH-akashiwo_Contig808:253448..253891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size193
Hectar predicted targeting categoryother localisation
Exons3
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387992.155107-CDS-H-akashiwo_Contig808:253447..2534981681387992.155107-CDS-H-akashiwo_Contig808:253447..253498Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig808 253448..253498 +
1681387992.1729121-CDS-H-akashiwo_Contig808:253645..2537461681387992.1729121-CDS-H-akashiwo_Contig808:253645..253746Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig808 253646..253746 +
1681387992.1857994-CDS-H-akashiwo_Contig808:253851..2538911681387992.1857994-CDS-H-akashiwo_Contig808:253851..253891Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig808 253852..253891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig808.3.1prot_H-akashiwo_Contig808.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig808 253448..253891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig808.3.1

>prot_H-akashiwo_Contig808.3.1 ID=prot_H-akashiwo_Contig808.3.1|Name=mRNA_H-akashiwo_Contig808.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
DDIKALLSGGGNPLGADSSGLNSLHYVVWNGHIDCLKLLLANDMGVNEEG
KKESCINSQSELGY
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mRNA from alignment at H-akashiwo_Contig808:253448..253891+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig808.3.1 ID=mRNA_H-akashiwo_Contig808.3.1|Name=mRNA_H-akashiwo_Contig808.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=444bp|location=Sequence derived from alignment at H-akashiwo_Contig808:253448..253891+ (Heterosigma akashiwo CCMP452)
GATGACATTAAAGCCTTACTCTCAGGAGGAGGTAACCCGCTCGGGGCAGA
TGTAAGTCTAGAACAGCTTTGTTCTACTTTTGAAATTGTACATGATTTTG
AACAACCCGTTATTTTAGAGGGGGCATTATTTTTATACATCCATGCTTTC
TATCAAGGCTAACAGCCCACAGTTTCGTCTTCAACTAATGAAAAATAGAG
TTCTGGCTTGAATTCTCTGCACTATGTGGTTTGGAATGGGCACATTGACT
GCCTCAAGTTGCTGCTAGCAAATGATATGGGGGTGAACGAGGAAGGGAAG
TGAGTAAGCCTCATCTTGGGATCATCATCTTCCATTGCTTAGTAAGGGTG
GTGGGTCACGCCTTACTAAAAATATTAAAAAAAAAATATTTAATCAATAC
ACAGAAAAGAAAGCTGCATCAACTCCCAATCGGAACTTGGCTAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig808:253448..253891+

>mRNA_H-akashiwo_Contig808.3.1 ID=mRNA_H-akashiwo_Contig808.3.1|Name=mRNA_H-akashiwo_Contig808.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig808:253448..253891+ (Heterosigma akashiwo CCMP452)
GATGACATTAAAGCCTTACTCTCAGGAGGAGGTAACCCGCTCGGGGCAGA
TAGTTCTGGCTTGAATTCTCTGCACTATGTGGTTTGGAATGGGCACATTG
ACTGCCTCAAGTTGCTGCTAGCAAATGATATGGGGGTGAACGAGGAAGGG
AAAAAAGAAAGCTGCATCAACTCCCAATCGGAACTTGGCTAC
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