mRNA_H-akashiwo_Contig804.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig804.3.1
Unique NamemRNA_H-akashiwo_Contig804.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig804.3.1 vs. uniprot
Match: A0A7S4D906_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D906_HETAK)

HSP 1 Score: 186 bits (471), Expect = 1.150e-58
Identity = 98/110 (89.09%), Postives = 100/110 (90.91%), Query Frame = 2 
Query:   20 CWQGQNEVGILDQEGEFLFEAGEGXXXXXXGFSYDEDLVLHFVEEGSNDEEEGCRREPQEDQELAPPFNTGQTSEFAKCEEPDCSARATHSFRKEEHPSRCGTHSFDGMR 349
            CWQGQNEVGILDQEGEFLFEAGE XXXXXX    DED +LHFVEEGSN+ EE   REPQEDQELAPPFNTGQTSEFAKCEEPDCSARATHSFRKEEHPSRCGTHSFDGMR
Sbjct:    1 CWQGQNEVGILDQEGEFLFEAGEXXXXXXXXXXXDEDHLLHFVEEGSNENEEEDCREPQEDQELAPPFNTGQTSEFAKCEEPDCSARATHSFRKEEHPSRCGTHSFDGMR 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig804.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D906_HETAK1.150e-5889.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig804contigH-akashiwo_Contig804:79879..80444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size395
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387990.8704734-UTR-H-akashiwo_Contig804:79878..798851681387990.8704734-UTR-H-akashiwo_Contig804:79878..79885Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig804 79879..79885 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387990.885094-CDS-H-akashiwo_Contig804:79885..802261681387990.885094-CDS-H-akashiwo_Contig804:79885..80226Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig804 79886..80226 +
1681387990.901452-CDS-H-akashiwo_Contig804:80398..804441681387990.901452-CDS-H-akashiwo_Contig804:80398..80444Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig804 80399..80444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig804.3.1prot_H-akashiwo_Contig804.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig804 79886..80444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig804.3.1

>prot_H-akashiwo_Contig804.3.1 ID=prot_H-akashiwo_Contig804.3.1|Name=mRNA_H-akashiwo_Contig804.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=129bp
MDEECWQGQNEVGILDQEGEFLFEAGEGEGGGGCGFSYDEDLVLHFVEEG
SNDEEEGCRREPQEDQELAPPFNTGQTSEFAKCEEPDCSARATHSFRKEE
HPSRCGTHSFDGMRHYLGSKGFFKVEGKD
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mRNA from alignment at H-akashiwo_Contig804:79879..80444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig804.3.1 ID=mRNA_H-akashiwo_Contig804.3.1|Name=mRNA_H-akashiwo_Contig804.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=566bp|location=Sequence derived from alignment at H-akashiwo_Contig804:79879..80444+ (Heterosigma akashiwo CCMP452)
TAGAAATATGGACGAGGAATGCTGGCAAGGTCAAAACGAAGTGGGTATCC
TTGACCAGGAGGGCGAATTTCTGTTTGAGGCTGGGGAAGGGGAAGGCGGT
GGTGGCTGTGGCTTTTCCTATGATGAAGACCTTGTTCTGCATTTTGTGGA
AGAAGGCTCAAATGATGAAGAGGAAGGCTGCCGCCGTGAGCCCCAGGAGG
ATCAAGAGTTGGCACCTCCTTTCAATACCGGCCAGACCTCGGAATTTGCC
AAGTGTGAAGAACCAGATTGTTCCGCCAGAGCCACACACAGCTTTCGGAA
AGAAGAGCATCCTTCACGATGTGGCACTCATTCTTTTGATGGAATGAGGT
GGATGGCTGTTTGACCGTTGACTCAGTTGTTTGTCCTGTTTGTTTGGTGT
TTTTGGCTTATTCCTATCTGTTTCGACAACTGCCAGCCATTTTTTTAATG
GAAGTTGCCATAGCAGCTCTTTTCCTTAACCAGTTCTGCTCAATCAAAAT
CCCCACCATCCTCCAAAAAGGCATTATTTGGGCTCCAAAGGCTTCTTTAA
GGTGGAAGGCAAGGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig804:79879..80444+

>mRNA_H-akashiwo_Contig804.3.1 ID=mRNA_H-akashiwo_Contig804.3.1|Name=mRNA_H-akashiwo_Contig804.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig804:79879..80444+ (Heterosigma akashiwo CCMP452)
ATGGACGAGGAATGCTGGCAAGGTCAAAACGAAGTGGGTATCCTTGACCA
GGAGGGCGAATTTCTGTTTGAGGCTGGGGAAGGGGAAGGCGGTGGTGGCT
GTGGCTTTTCCTATGATGAAGACCTTGTTCTGCATTTTGTGGAAGAAGGC
TCAAATGATGAAGAGGAAGGCTGCCGCCGTGAGCCCCAGGAGGATCAAGA
GTTGGCACCTCCTTTCAATACCGGCCAGACCTCGGAATTTGCCAAGTGTG
AAGAACCAGATTGTTCCGCCAGAGCCACACACAGCTTTCGGAAAGAAGAG
CATCCTTCACGATGTGGCACTCATTCTTTTGATGGAATGAGGCATTATTT
GGGCTCCAAAGGCTTCTTTAAGGTGGAAGGCAAGGAC
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