mRNA_H-akashiwo_Contig8.93.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.93.1
Unique NamemRNA_H-akashiwo_Contig8.93.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:4303841..4304425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size190
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size168
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.2447062-UTR-H-akashiwo_Contig8:4303840..43038601681387981.2447062-UTR-H-akashiwo_Contig8:4303840..4303860Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 4303841..4303860 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.2554562-CDS-H-akashiwo_Contig8:4303860..43039131681387981.2554562-CDS-H-akashiwo_Contig8:4303860..4303913Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4303861..4303913 +
1681387981.2730484-CDS-H-akashiwo_Contig8:4304052..43041481681387981.2730484-CDS-H-akashiwo_Contig8:4304052..4304148Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4304053..4304148 +
1681387981.2831469-CDS-H-akashiwo_Contig8:4304406..43044251681387981.2831469-CDS-H-akashiwo_Contig8:4304406..4304425Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4304407..4304425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.93.1prot_H-akashiwo_Contig8.93.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 4303861..4304425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.93.1

>prot_H-akashiwo_Contig8.93.1 ID=prot_H-akashiwo_Contig8.93.1|Name=mRNA_H-akashiwo_Contig8.93.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
MVVDSKKMSDDLPAETTRRRASLQPDNNSAKKEAPSRLSMGPNSRIPATS
GKKKKS
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mRNA from alignment at H-akashiwo_Contig8:4303841..4304425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.93.1 ID=mRNA_H-akashiwo_Contig8.93.1|Name=mRNA_H-akashiwo_Contig8.93.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=585bp|location=Sequence derived from alignment at H-akashiwo_Contig8:4303841..4304425+ (Heterosigma akashiwo CCMP452)
GCTCCTCCTTTCTATATATAATGGTGGTCGATTCGAAAAAAATGAGCGAT
GATCTTCCAGCTGAAACCACCAGGTGATAAGAGAGGCGGAGGGGTTCATC
TACATATTTTACTAAATGCGTTGTTTTCAATATTCTATTTGCTGATAAGG
AAGCAAGCTGCTTAAAGCAGAAATGACTCCAGCTTTCTAGATATCCTACT
TTATTTGCGCAGGAGGAGAGCATCTCTCCAGCCTGATAATAATAGTGCCA
AAAAAGAGGCGCCCTCAAGACTGTCAATGGGTCCCAACTCGCGCATTCCT
GCCACTAGGTAAACGACCAAAGCAATGCTGTAAGCAATGAACAAAGGAAG
AAAAGCACGCCCAACAAATGTACATGCACTTTTGGACTTGATGCTTAAAC
TATAATATTGCAAGCCATATGCATATGAACCTAAGATAATGGAAGTGAGG
AGCTTGATGCGCTTACATTCGAAATATCCACACATCATGACAGTTCCAGT
GCCAACAGCGTACGACCCCCCAACGACAAAACACGCCTTCCACCCGGGCG
GCGGCGGGGGCGGCAGCGGAAAGAAGAAGAAGTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:4303841..4304425+

>mRNA_H-akashiwo_Contig8.93.1 ID=mRNA_H-akashiwo_Contig8.93.1|Name=mRNA_H-akashiwo_Contig8.93.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig8:4303841..4304425+ (Heterosigma akashiwo CCMP452)
ATGGTGGTCGATTCGAAAAAAATGAGCGATGATCTTCCAGCTGAAACCAC
CAGGAGGAGAGCATCTCTCCAGCCTGATAATAATAGTGCCAAAAAAGAGG
CGCCCTCAAGACTGTCAATGGGTCCCAACTCGCGCATTCCTGCCACTAGC
GGAAAGAAGAAGAAGTCC
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