mRNA_H-akashiwo_Contig8.80.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.80.1
Unique NamemRNA_H-akashiwo_Contig8.80.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A7S2V5P0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5P0_9STRA)

HSP 1 Score: 266 bits (680), Expect = 3.280e-84
Identity = 147/255 (57.65%), Postives = 184/255 (72.16%), Query Frame = 1
Query:   19 QMSKLGSIAVFAMLAFGFASAFQRSTVFSTTQTM-MRSGRGQLEM-YDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDP 777
            +M  + +   F M+     S    S   +T ++  + + R QLEM Y K+FVAGA +GVG+ +VE+L ++  +VVAFVRREE+K EL  L GVTAI+GDAL QK VE AMDGCDAAVTTLG+ P D  + K DY GNVNV E+AGILGVTR ILVTS+GCG+S+ A+S + Y+ LE AL AK+KAE+ LT+YYTNSDWTVIRPGGL +  AT  AVLTEN  A G+I R DVA LV +AL++  T RKV TA+DP
Sbjct:   19 KMKFISTALAFIMMVISCESFRTPSIQIATRKSSNLNANRAQLEMAYKKVFVAGAAKGVGRQIVEQLVAKDVEVVAFVRREEAKQELGGLKGVTAILGDALVQKDVEGAMDGCDAAVTTLGSAPTDEQRWKVDYDGNVNVIEAAGILGVTRCILVTSVGCGDSKEAVSPDAYEKLENALKAKEKAERVLTKYYTNSDWTVIRPGGLMNGEATSAAVLTENKMACGVINRADVASLVVKALDSQKTFRKVLTAVDP 273          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: D7FJ06_ECTSI (Epimerase/dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ06_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 1.500e-82
Identity = 128/220 (58.18%), Postives = 167/220 (75.91%), Query Frame = 1
Query:  151 YDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQK 810
            Y K+FVAG  +GVG+ +++KL  QG +VVA VRRE++K ELE + GV+A++ DAL+ K VE  +DGCDAA+TTLG  PE     + DY GN NV ESAGILG+TRV++VTS+GCG SR AISD+VY+VLE AL AK  AE  L +YYTNS+WT+IRPGGL  + ATG A+LTE+T A G+I R DVADL  +AL +P+T RK+ TA+DP++ S+Y   +K
Sbjct:   48 YGKVFVAGGAKGVGRAVIDKLVDQGSEVVALVRREDAKDELEAIKGVSAVVCDALDLKGVEAVLDGCDAAITTLGGAPEGDESKRVDYAGNRNVIESAGILGITRVVMVTSVGCGSSREAISDQVYQVLEKALKAKTLAENMLLKYYTNSEWTIIRPGGLKSDAATGTAILTEDTKAAGVINRADVADLAVQALNSPSTVRKILTAVDPAVQSSYDSAEK 267          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A835Z825_9STRA (Epimerase/dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z825_9STRA)

HSP 1 Score: 258 bits (659), Expect = 3.360e-81
Identity = 132/220 (60.00%), Postives = 169/220 (76.82%), Query Frame = 1
Query:  151 YDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQK 810
            Y+K+FVAG   GVG+ +V +L S+GKQVVA VRRE++  EL  + GVTA++ DAL+ K VE A+DGCDAA+TTLG +  +   ++ DY GN NV ESAGILGVTRVILVTS+GCG+SR AISD+VY  LE AL AK KAEK L +YYTN+ WT+IRPGGL     TG+A+LTEN +  G+IRR DVAD+V RAL+   TH+KV+TA+DPS+PS++ +  K
Sbjct:   40 YNKVFVAGGSSGVGREVVNQLVSKGKQVVAIVRREDALEELNAIEGVTAVMVDALDLKGVEGALDGCDAAITTLGGSSGE---NRVDYEGNRNVIESAGILGVTRVILVTSVGCGDSRGAISDQVYTSLEKALVAKTKAEKMLQKYYTNAFWTIIRPGGLQTAEGTGKAILTENKTIAGIIRRADVADVVVRALDNDGTHKKVFTAVDPSIPSSFGDASK 256          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: B7FVE3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE3_PHATC)

HSP 1 Score: 257 bits (656), Expect = 1.120e-80
Identity = 141/254 (55.51%), Postives = 178/254 (70.08%), Query Frame = 1
Query:   49 FAMLAFGFASAFQRSTVFSTTQTMMRSGRGQLEMYDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQK 810
            FA++    A    ++  F TT+  + S    L+ Y K+FVAG  RGVG+ +V++L  QG +VVA VR E++  EL  + GVTAI GDA EQKAVENAMDGCDAA+TTLG    D  K + DY GN NV ESAGILGVTRVILVTS+GCG S+ A    V++ L+  LTAK+KAE  L +YYTN +WT+IRPGGL  EPATG+A+LTE+T A G I R DVA L  +AL +  T RKV TA+DPS+ SA S+G++
Sbjct:   11 FALVGVTSAFVAPKAPTFGTTRFPVSST--SLDAYKKVFVAGGTRGVGRCIVDQLLGQGSEVVALVRSEDALKELNAIEGVTAIRGDAFEQKAVENAMDGCDAAITTLGGATSDGGK-RVDYDGNSNVIESAGILGVTRVILVTSVGCGSSKEAAPPNVFEALKEVLTAKEKAENVLIKYYTNMNWTIIRPGGLKSEPATGKAILTEDTRAIGTIHREDVAALAIKALNSSNTERKVLTAIDPSIDSAVSDGKQ 261          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A7S4AAV3_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AAV3_9STRA)

HSP 1 Score: 252 bits (644), Expect = 1.320e-78
Identity = 130/222 (58.56%), Postives = 165/222 (74.32%), Query Frame = 1
Query:  151 YDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQKEL 816
            Y K+FVAG  +GVG  +VEKLS++G +VVA VR EESKTEL  + GVTAI+GDA  QK VENAMDGCDAA+TTLG T  D    + DY GN NV ESAGILGV R++LVTS+GCG S+ A    V+++L+  L AK+KAE  L  +YTNS+W++IRPGGL  EP TG+A+LTE+T+A G I R DVADLV RA+++P T R V +A+DPS+ S  +   KE+
Sbjct:   63 YKKVFVAGGSKGVGHAIVEKLSARGTEVVALVRSEESKTELNSMSGVTAILGDAFNQKDVENAMDGCDAAITTLGGTAAD---RRVDYEGNNNVIESAGILGVQRILLVTSVGCGSSKGAAPPNVFEILKDVLAAKEKAENVLIEWYTNSNWSIIRPGGLVSEPMTGKAILTEDTTAIGSIHREDVADLVIRAMDSPKTERVVLSAVDPSIASQVAVKGKEI 281          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A7S3L6R6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6R6_9STRA)

HSP 1 Score: 251 bits (640), Expect = 2.530e-78
Identity = 126/218 (57.80%), Postives = 161/218 (73.85%), Query Frame = 1
Query:  151 YDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEG 804
            Y  +FVAG  +GVG+L+++KL  QG +VVA VR+EE   +L  + GVTAI+GDA +QK VENAMDGCDAA+TTLG + +DT   + DY GN NV ESAGILGV R+ILVTS+GCG S+ A  + V++ L+  L AK+KAE  L +YYTNS+W++IRPGGL  EPATG A+LTE+    G I R DVA LV R LE+P T RK+ TA+DPS+ SA + G
Sbjct:   39 YKNVFVAGGSKGVGRLVIDKLLEQGSKVVALVRKEEVAADLNSIEGVTAIVGDAFDQKTVENAMDGCDAAITTLGGSTQDTGA-RIDYAGNSNVIESAGILGVQRIILVTSVGCGSSKEAAPEAVFEALKEVLLAKEKAENVLIKYYTNSNWSIIRPGGLKSEPATGNAILTEDNKTIGTIHREDVASLVVRCLESPKTERKILTAIDPSIESAVATG 255          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: B8C036_THAPS (NAD(P)-bd_dom domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C036_THAPS)

HSP 1 Score: 249 bits (637), Expect = 1.090e-77
Identity = 137/257 (53.31%), Postives = 175/257 (68.09%), Query Frame = 1
Query:   52 AMLAFGFASAFQRSTVFSTTQTMMRSGRGQLEMYDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHK-ADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQKELD 819
            A  AF   +  QR     T ++ +   +GQ + Y K+FVAG  +GVG+L+V+KL S G +VVA VR +E+  EL  L GVTAI GDA++ K VE AMDGCDAA+TTLG         K  DY GN NV E+AGILGVTRV+LVTS+GCG S+ A    VY+VL+  L  K+KAEK LTRYYTN +WT++RPGGL  EP TG+AVLTE+T A G I RGDVADLV +AL +  T +K+ +A+DPS+ SA +   K  +
Sbjct:   15 ASSAFAPTAFVQRVAPAPTQRSALYMVQGQGDSYKKVFVAGGSKGVGRLVVDKLVSNGAEVVALVRSDEAVDELSALDGVTAIKGDAMDYKTVEGAMDGCDAAITTLGGGHNVAEGEKYVDYVGNNNVIEAAGILGVTRVVLVTSIGCGSSKEATPPSVYEVLKDVLVQKEKAEKVLTRYYTNMNWTIVRPGGLVSEPPTGKAVLTEDTMAIGSIHRGDVADLVVKALSSKNTEKKILSAVDPSIESASNPEGKTCE 271          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A1Z5JK00_FISSO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JK00_FISSO)

HSP 1 Score: 245 bits (626), Expect = 3.140e-76
Identity = 131/247 (53.04%), Postives = 172/247 (69.64%), Query Frame = 1
Query:   91 STVFSTTQTMMRSGRGQLEMYDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQKELDPVPL 831
            ++ F+ T    R     L  Y+K+FVAG  RGVG+ LV++L + G+QVVA VR+EE    L  L G TAI+GDA +QK VENAMDGCDAA+TTLG +  D  + + DY GN NV ESAGILGVTRVILVTS+GCG S+ A    V++ L+  L AK+KAE  L +YYTN +WT++RPGGL  EPATG+A+LTE+ +A G I R DVA LV +AL+A  T +K+ +A+DPS+ S+ S   K ++   L
Sbjct:   16 TSAFTMTPPSTRGSSTALTAYNKVFVAGGSRGVGRCLVDQLIASGRQVVALVRKEEDAGLLNALEGCTAIVGDAFDQKTVENAMDGCDAAITTLGGSTADQGQ-RIDYDGNNNVIESAGILGVTRVILVTSIGCGSSKEAAPPNVFEALKPVLLAKEKAENILIKYYTNMNWTIVRPGGLKSEPATGKAILTEDNTAIGSIHREDVAALVIQALDAANTEKKILSAVDPSITSSVSMEGKTVEEFAL 261          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A7S2UDM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UDM5_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.780e-74
Identity = 135/267 (50.56%), Postives = 180/267 (67.42%), Query Frame = 1
Query:   22 MSKLGSIAVFAMLAFGFASAFQRSTVF--STTQTMMRSGRGQLEM--------YDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSA 792
            M +L  +A  A+LA G  SAF  ++ F   TT +  +     L M        Y+K+FVAG  +GVG+L+V+KL   G  VVA VR EE+  EL  L GVTA+IGDA + KAVE AMDGCDAA++TLG    +  K + DY GN NV E+AGILGVTRV+L+TS+GCG S+ A    V++VL+  L+AK++AE  L +YYTN++WT+IRPGGL  EPATG+A+LTE+  A G I R DVA L  +AL +P T +K+ +A+DP + SA
Sbjct:    1 MLRLLPLAAAALLA-GVCSAFVPASTFVSRTTASSAKKSYSSLYMVEGQGGQTYNKVFVAGGSKGVGRLVVDKLVGSGTGVVALVRSEEAAAELNALDGVTAVIGDAFDYKAVEGAMDGCDAAMSTLGGGTVEEGKQRVDYEGNSNVIEAAGILGVTRVVLITSIGCGSSKEAAPPSVFEVLKDVLSAKERAENILIKYYTNTNWTIIRPGGLKSEPATGKAILTEDNMAIGSIHREDVAALAIQALTSPKTKQKILSAVDPEITSA 266          
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Match: A0A7S2HK64_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HK64_9STRA)

HSP 1 Score: 241 bits (615), Expect = 2.600e-74
Identity = 136/272 (50.00%), Postives = 177/272 (65.07%), Query Frame = 1
Query:   22 MSKLGSIAVFAMLAFGFAS-AFQRSTVFSTTQTMMRSGRG-QLEMYDKIFVAGAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQKAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVILVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRPGGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTALDPSLPSAYSEGQKELDPVPL 831
            +S LG+      L   FA  AF  S   ST  +   S     L+ Y K+FVAG  +GVG+L+V+KL   G +VVA VR +E+  EL  + GVT I+GDA E K VENAMDGCDAA+TTLG         + DY GN NV E+AGILGVTRVILVTS+GCG S+ A    V++VL+  L AK++AE  L +YYTN++WT++RPGGL  EPATG+A+LTE+  A G I R DVA L+ +AL +  T RKV +A+D S+PSA +   + +D   L
Sbjct:    9 LSALGAALFSCQLVASFAPPAFLGSRRTSTQASGSSSATTTSLDAYKKVFVAGGSKGVGRLIVDKLIEDGSEVVALVRSQEAVDELGAIDGVTPILGDAFEYKNVENAMDGCDAAITTLGQGSATEDGKRVDYEGNSNVIEAAGILGVTRVILVTSIGCGSSKEAAPPSVFEVLKDVLAAKERAENVLIKYYTNTNWTIVRPGGLKSEPATGEAILTEDAMAIGSIHREDVASLIVKALTSSKTERKVLSAVDQSIPSASNVEGRVVDEFAL 280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V5P0_9STRA3.280e-8457.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FJ06_ECTSI1.500e-8258.18Epimerase/dehydrogenase n=1 Tax=Ectocarpus silicul... [more]
A0A835Z825_9STRA3.360e-8160.00Epimerase/dehydrogenase n=1 Tax=Tribonema minus Ta... [more]
B7FVE3_PHATC1.120e-8055.51Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S4AAV3_9STRA1.320e-7858.56Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3L6R6_9STRA2.530e-7857.80Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8C036_THAPS1.090e-7753.31NAD(P)-bd_dom domain-containing protein n=1 Tax=Th... [more]
A0A1Z5JK00_FISSO3.140e-7653.04NAD(P)-bd_dom domain-containing protein n=1 Tax=Fi... [more]
A0A7S2UDM5_9STRA1.780e-7450.56Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2HK64_9STRA2.600e-7450.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:3927092..3928236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJ06
PFAMsNAD_binding_10
Model size1145
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons1
Evalue7.96e-85
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Ec32 ortholog descriptionepimerase/dehydrogenase
Ec32 orthologEc-07_004910.1
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
Cds size813
COG categoryGM
BiGG ReactioniRC1080.CRv4_Au5_s6_g13409_t1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387984.3604345-UTR-H-akashiwo_Contig8:3927091..39271121681387984.3604345-UTR-H-akashiwo_Contig8:3927091..3927112Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 3927092..3927112 +
1681387984.3823943-UTR-H-akashiwo_Contig8:3927925..39282361681387984.3823943-UTR-H-akashiwo_Contig8:3927925..3928236Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 3927926..3928236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387984.371954-CDS-H-akashiwo_Contig8:3927112..39279251681387984.371954-CDS-H-akashiwo_Contig8:3927112..3927925Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 3927113..3927925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.80.1prot_H-akashiwo_Contig8.80.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 3927113..3927925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.80.1

>prot_H-akashiwo_Contig8.80.1 ID=prot_H-akashiwo_Contig8.80.1|Name=mRNA_H-akashiwo_Contig8.80.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=271bp
MSKLGSIAVFAMLAFGFASAFQRSTVFSTTQTMMRSGRGQLEMYDKIFVA
GAGRGVGKLLVEKLSSQGKQVVAFVRREESKTELEKLPGVTAIIGDALEQ
KAVENAMDGCDAAVTTLGTTPEDTVKHKADYTGNVNVFESAGILGVTRVI
LVTSLGCGESRAAISDEVYKVLEGALTAKQKAEKALTRYYTNSDWTVIRP
GGLSHEPATGQAVLTENTSAGGMIRRGDVADLVARALEAPATHRKVYTAL
DPSLPSAYSEGQKELDPVPL*
back to top

mRNA from alignment at H-akashiwo_Contig8:3927092..3928236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.80.1 ID=mRNA_H-akashiwo_Contig8.80.1|Name=mRNA_H-akashiwo_Contig8.80.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-akashiwo_Contig8:3927092..3928236+ (Heterosigma akashiwo CCMP452)
ATCATTTTGACGGTGGAACAGATGAGCAAGCTCGGTAGCATCGCAGTGTT TGCAATGCTGGCCTTTGGTTTTGCCAGCGCTTTTCAGCGTAGCACTGTGT TCTCTACCACTCAGACCATGATGAGGTCTGGCCGTGGGCAACTTGAGATG TACGATAAGATCTTCGTTGCTGGTGCTGGGCGCGGGGTAGGCAAGCTGCT TGTGGAAAAGCTTTCCTCTCAAGGTAAACAAGTGGTGGCCTTTGTCCGCC GAGAGGAAAGTAAGACCGAACTGGAGAAGCTCCCTGGAGTCACTGCCATA ATCGGGGATGCCCTGGAGCAGAAGGCGGTGGAGAACGCCATGGACGGCTG TGACGCTGCAGTAACAACACTGGGCACAACCCCTGAGGACACGGTCAAGC ACAAGGCCGACTACACAGGGAACGTGAATGTATTCGAATCCGCCGGCATC CTGGGCGTGACGCGCGTGATTCTTGTGACCAGCCTAGGCTGCGGCGAGTC CCGGGCGGCCATCAGCGACGAGGTGTACAAGGTGCTCGAGGGCGCGCTCA CGGCCAAGCAGAAGGCAGAGAAGGCGCTCACCCGCTACTACACCAACAGC GACTGGACCGTGATCCGCCCGGGGGGGCTCTCCCATGAGCCCGCGACCGG CCAGGCCGTGCTCACCGAGAACACGTCCGCGGGCGGCATGATCCGCAGGG GGGACGTGGCCGACCTCGTCGCGCGCGCGCTGGAGGCGCCGGCCACCCAC CGGAAGGTCTACACCGCGCTGGACCCCAGCCTACCCTCCGCGTACTCCGA GGGCCAGAAGGAACTCGACCCCGTGCCGCTGTGACCGGGGGGCCAGAGGG ACTCCGGCCCCTCCTTGCCCCTTGGACGACGCCCGACCCCGCCGGCCGAC GCCGCCCTGCTGTTGCGGCAAATCAAGGAAAGTGCTGCTGCTACTACTGG GTAGATCCGCGAATGGGAAGTGCTAGTGTCGATGCTGAGGTTTGGCAAAG CTCAAGAAAGTAGCACCACCACCAGCCAGGCCACCGTCTGGATGTGCACA ACATTTTGTGCCCCCCCAACTTGTGCTAAATTCGCATGACTCATCTGTAT CCAACAAAAAAACACCGTATCCTTTAACACCTTTTTGAACTATGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig8:3927092..3928236+

>mRNA_H-akashiwo_Contig8.80.1 ID=mRNA_H-akashiwo_Contig8.80.1|Name=mRNA_H-akashiwo_Contig8.80.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=813bp|location=Sequence derived from alignment at H-akashiwo_Contig8:3927092..3928236+ (Heterosigma akashiwo CCMP452)
ATGAGCAAGCTCGGTAGCATCGCAGTGTTTGCAATGCTGGCCTTTGGTTT
TGCCAGCGCTTTTCAGCGTAGCACTGTGTTCTCTACCACTCAGACCATGA
TGAGGTCTGGCCGTGGGCAACTTGAGATGTACGATAAGATCTTCGTTGCT
GGTGCTGGGCGCGGGGTAGGCAAGCTGCTTGTGGAAAAGCTTTCCTCTCA
AGGTAAACAAGTGGTGGCCTTTGTCCGCCGAGAGGAAAGTAAGACCGAAC
TGGAGAAGCTCCCTGGAGTCACTGCCATAATCGGGGATGCCCTGGAGCAG
AAGGCGGTGGAGAACGCCATGGACGGCTGTGACGCTGCAGTAACAACACT
GGGCACAACCCCTGAGGACACGGTCAAGCACAAGGCCGACTACACAGGGA
ACGTGAATGTATTCGAATCCGCCGGCATCCTGGGCGTGACGCGCGTGATT
CTTGTGACCAGCCTAGGCTGCGGCGAGTCCCGGGCGGCCATCAGCGACGA
GGTGTACAAGGTGCTCGAGGGCGCGCTCACGGCCAAGCAGAAGGCAGAGA
AGGCGCTCACCCGCTACTACACCAACAGCGACTGGACCGTGATCCGCCCG
GGGGGGCTCTCCCATGAGCCCGCGACCGGCCAGGCCGTGCTCACCGAGAA
CACGTCCGCGGGCGGCATGATCCGCAGGGGGGACGTGGCCGACCTCGTCG
CGCGCGCGCTGGAGGCGCCGGCCACCCACCGGAAGGTCTACACCGCGCTG
GACCCCAGCCTACCCTCCGCGTACTCCGAGGGCCAGAAGGAACTCGACCC
CGTGCCGCTGTGA
back to top