mRNA_H-akashiwo_Contig8.70.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.70.1
Unique NamemRNA_H-akashiwo_Contig8.70.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.70.1 vs. uniprot
Match: A0A7S4D4I8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4I8_HETAK)

HSP 1 Score: 117 bits (293), Expect = 3.160e-32
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 ASHQTDPFATNNPGVYSLANQPHPAAAHTGNDPFGGGDPFAQGGGNXXXXXXGSGHHHPASQQ 189
            ASHQTDPFATNNPGVYSLANQPHPAAAHTGNDPFGGGDPFAQGGGNXXXXXXGSGHHHPASQQ
Sbjct:   83 ASHQTDPFATNNPGVYSLANQPHPAAAHTGNDPFGGGDPFAQGGGNXXXXXXGSGHHHPASQQ 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D4I8_HETAK3.160e-32100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:3272248..3274143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size193
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.1525297-CDS-H-akashiwo_Contig8:3272247..32723411681387981.1525297-CDS-H-akashiwo_Contig8:3272247..3272341Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 3272248..3272341 +
1681387981.1623096-CDS-H-akashiwo_Contig8:3274045..32741431681387981.1623096-CDS-H-akashiwo_Contig8:3274045..3274143Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 3274046..3274143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.70.1prot_H-akashiwo_Contig8.70.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 3272248..3274143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.70.1

>prot_H-akashiwo_Contig8.70.1 ID=prot_H-akashiwo_Contig8.70.1|Name=mRNA_H-akashiwo_Contig8.70.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
ASHQTDPFATNNPGVYSLANQPHPAAAHTGNDPFGGGDPFAQGGGNGGDP
FAGSGHHHPASQQ*
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mRNA from alignment at H-akashiwo_Contig8:3272248..3274143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.70.1 ID=mRNA_H-akashiwo_Contig8.70.1|Name=mRNA_H-akashiwo_Contig8.70.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1896bp|location=Sequence derived from alignment at H-akashiwo_Contig8:3272248..3274143+ (Heterosigma akashiwo CCMP452)
GCTTCCCATCAAACAGACCCTTTTGCGACCAATAACCCGGGTGTCTACTC
ACTCGCTAATCAGCCTCACCCAGCGGCGGCTCACACTGGCAATGGTGAGA
AGCTTGCTGCTTTCCTATATGTTCGTTCCAAAACTTCAAACACCCGTTTT
TTCAAGCTCGAAAGGGTCTTATATGTAATGATATGTATATATGAAAATAA
AAATAACAACGACATCACTCACAAACAAGAGGAAGGGTTTTACCCCCACC
CCTCCTTCCCCAGCAGCTGCCGCTTTGTAATGTACGATTCATCTCTTCTT
ACATTATACACTGAACAATATATATATATATATATATATATATATTATGA
GCTGAATTTAACCAACCCAATATATATGAAAATCAAAAAACGAAAAATTA
AAAATAAAAGAAGACAACAACAAAGAAATAAAAACCAGAACACCAGTCCC
TGCAGGCCTTCCTCAGGCGCATTGCTACTCGGCTCTCGGCAAAGTGGCAA
AAGCCTCTCTCAACGGTCAGCAGCTGGGTGCGTGTCCGTGTGCAGTTCGT
GCTCATCAAAGCGGTGGATCTGCGGACCAGGGGCTCCAGGAAGAAGTGGA
GGAGCTCGGGGTTTGAGGATGGCGAGGGGATTGCCGTTCTCTTCCAGAGA
TAGTGGGGTGTGCTGTATTCCTGTTTGAACAGTATGATTTGTGTTGATTT
GGGTTTTGGGATTTCATGTTTCGGTTTTAGTACATTACCACAGGGACATC
TGCATAGATGCAAGGCGTAGGTTGTTTTGGTTAAATTTAACTCTCTCTCT
CTCTCTCTCTCTCTATATATATATATATACTTCTTGATTTAACGTCTCAC
CGTTAGGCACGCGTTCAGCCTCCTAGCTCAAGCACTCCCACCACCATCAC
TGAAACAGGACGTTAGAAAGCATTTATATGGACTGGGAAAAGGCTACAGC
TCCACTCCAGCGTTCCCACTCCGTGACAAATATGCTGGCATTTTTTCGGC
TACTACAAGCCACCACCAGTTCGTCTGTGAGTGAAAGGGGAATGAAAAAT
AGCAGACCCCCAGCATGAGCTTCAATCATCACAACAACTTTAGTAGTAGC
TTCTACAAACAACTGCCACCACCATCTTCGTGCTCACAGGCAAACTGACG
ATGGCTTGTAGTAGCCGAAATGCCAGCATATTTGTCGCGGAGTGTGGATG
CTGTAGTGTAGCCTTTTTCTAATCAATACAATTTTCTAACTTGCTATTTC
AGTGATGGTGGTGGAAGTGCTTGAGCTAATAGGACTGAACGTGTGCCTTC
CGTTAGTACGTTAATTCCAGTCTTTCCATCTAGATATGTCTCTGCTCCAC
AGAGATTTCTCCACAAAGTTCATTGCCAAACATACTCATGCATCTTTATT
GGTATTAGTAGCGGTATCCTGGTGTTGTTGTTGTAACCTGTAGTAGTGCT
GGATGGGCTGGCAGTAGTGCAGCAAGCCACCCTGTGATTTATAGGCGAAC
ACGGCTTGACAAGGTTCATTGCCTTAAAGCCTTTTATATCTTGTAAAAAA
AAAAAAAAAAAAAAAAACATGCATCTTTTGGTAATTTAAAATGAGAAAGC
TGCAAAAAAATGGAGACGACCCACACAGCTCAAACGAATCAGCCAGTAAC
ATAGTTATTTGGTATGGGGTTGTTTGCAACAATGTATCCTCGAACCCACA
CTTCTGTAGTCCTTTTCTTTCCATTTTAAAGTGTTTATTTCCCCCCCTAA
CCCCATCCCCGCTCCCCCTCTTTTTCATTCTCTGTATTGCTGTAACAGAC
CCCTTTGGGGGCGGGGACCCTTTCGCGCAAGGCGGCGGCAATGGCGGCGA
CCCCTTTGCTGGCAGCGGACACCACCACCCTGCCTCGCAGCAGTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:3272248..3274143+

>mRNA_H-akashiwo_Contig8.70.1 ID=mRNA_H-akashiwo_Contig8.70.1|Name=mRNA_H-akashiwo_Contig8.70.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig8:3272248..3274143+ (Heterosigma akashiwo CCMP452)
GCTTCCCATCAAACAGACCCTTTTGCGACCAATAACCCGGGTGTCTACTC
ACTCGCTAATCAGCCTCACCCAGCGGCGGCTCACACTGGCAATGACCCCT
TTGGGGGCGGGGACCCTTTCGCGCAAGGCGGCGGCAATGGCGGCGACCCC
TTTGCTGGCAGCGGACACCACCACCCTGCCTCGCAGCAGTAA
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