mRNA_H-akashiwo_Contig8.47.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.47.1
Unique NamemRNA_H-akashiwo_Contig8.47.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A7S3Y469_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y469_HETAK)

HSP 1 Score: 124 bits (312), Expect = 1.010e-33
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVRAARAR 183
            GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVRAARAR
Sbjct:   22 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVRAARAR 82
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A7S2V884_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V884_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.980e-19
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVRAARA 180
            G+I  +GFSTHA TPLIV+ I TG FDYVNLHY + GSYT+SGTG    GNL+AV+AA A
Sbjct:   45 GRIRFIGFSTHADTPLIVETINTGRFDYVNLHYHFCGSYTSSGTGVENMGNLDAVKAANA 104
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BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A7S3XR36_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR36_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.840e-17
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVRAARA 180
            G+IGH+GFSTH MT +I+ AI TG FDYVNLHY ++GSYTASG GP  GGN  AV AA+A
Sbjct:  177 GRIGHIGFSTHGMTDVILDAINTGRFDYVNLHYHFLGSYTASG-GPHGGGNRAAVAAAQA 235
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A7R9UDQ6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDQ6_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.420e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    4 KIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTG--PATGGNLEAVRAARAR 183
            K+  +GFS+HA TPLI++AIET EFDYVNLHY ++GSY ++GT   P   GNL A+RAA  R
Sbjct:    1 KVRFLGFSSHAPTPLILRAIETNEFDYVNLHYHWIGSYVSTGTNTTPEADGNLAAIRAAHER 62
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A4D9CQ75_9STRA (Aldo_ket_red domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CQ75_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.890e-15
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTG--PATG-GNLEAVRAA 174
            G+I  VGFSTHA TPLIV+AI+TG FDYVNLHY  +GSYT+SGT   P+ G GN EA+ AA
Sbjct:  140 GRIRFVGFSTHAPTPLIVKAIDTGIFDYVNLHYHAIGSYTSSGTSESPSAGPGNWEAIEAA 200
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A7S3QCX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCX1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.110e-13
Identity = 35/56 (62.50%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVR 168
            GKI H+GFSTH     I Q IETG FDY N+HY  +GSYTASG G   GGN E VR
Sbjct:  146 GKIKHIGFSTHGQPEFIRQCIETGSFDYANIHYHALGSYTASGGGE-NGGNREIVR 200
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A835ZFP1_9STRA (Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.050e-13
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGT 132
            GKI  VGFSTHA T LIV+  ETG FDYVNLHY +VGSYTASGT
Sbjct:  215 GKIRWVGFSTHAHTDLIVKCCETGRFDYVNLHYHFVGSYTASGT 258
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A7S2K0D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K0D0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.170e-13
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVRAARAR 183
            GKI HVGFSTH    LI + I T +F+YVNLHY + GSYTASG GP  GGN+E +R  + R
Sbjct:  126 GKIRHVGFSTHGQAELIKKFIITNKFEYVNLHYHFFGSYTASGGGPF-GGNIENIRLCQER 185
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: B7FNZ8_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FNZ8_PHATC)

HSP 1 Score: 71.2 bits (173), Expect = 5.430e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVR 168
            GKI HVGFSTHA T  I++ I+   F+YVNLHY Y GSYTASG G    GNL+ V+
Sbjct:  244 GKIRHVGFSTHASTTFILKLIDMDVFEYVNLHYHYFGSYTASGGGHDGNGNLDCVK 299
[Close]
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Match: A0A1E7FEA9_9STRA (Aldo/keto reductase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEA9_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.930e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGGNLEAVR 168
            GKI H+GFSTH    LI + IET +F+Y N+HY ++GSYTASG G   GGNL+ +R
Sbjct:  213 GKIKHIGFSTHGQPELIKRCIETDQFEYANIHYHFLGSYTASGGGQC-GGNLDNIR 267
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y469_HETAK1.010e-33100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V884_9STRA3.980e-1966.67Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XR36_HETAK1.840e-1768.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UDQ6_9STRA3.420e-1559.68Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9CQ75_9STRA4.890e-1567.21Aldo_ket_red domain-containing protein n=2 Tax=Mon... [more]
A0A7S3QCX1_9STRA2.110e-1362.50Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A835ZFP1_9STRA4.050e-1377.27Aldo/keto reductase n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2K0D0_9STRA5.170e-1359.02Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
B7FNZ8_PHATC5.430e-1360.71Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A1E7FEA9_9STRA1.930e-1257.14Aldo/keto reductase n=1 Tax=Fragilariopsis cylindr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:2237481..2239464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2850.Phatr17335
PFAMsAldo_ket_red
Model size185
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.9e-14
EggNOG OGsCOG1453@1|root,2SMKH@2759|Eukaryota,2XAE0@2836|Bacillariophyta
DescriptionAldo/keto reductase family
Cds size183
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387983.6227257-CDS-H-akashiwo_Contig8:2237482..22375631681387983.6227257-CDS-H-akashiwo_Contig8:2237482..2237563Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 2237483..2237563 -
1681387983.63474-CDS-H-akashiwo_Contig8:2239362..22394641681387983.63474-CDS-H-akashiwo_Contig8:2239362..2239464Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 2239363..2239464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.47.1prot_H-akashiwo_Contig8.47.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 2237483..2239464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.47.1

>prot_H-akashiwo_Contig8.47.1 ID=prot_H-akashiwo_Contig8.47.1|Name=mRNA_H-akashiwo_Contig8.47.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=61bp
GKIGHVGFSTHAMTPLIVQAIETGEFDYVNLHYQYVGSYTASGTGPATGG
NLEAVRAARAR
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mRNA from alignment at H-akashiwo_Contig8:2237481..2239464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.47.1 ID=mRNA_H-akashiwo_Contig8.47.1|Name=mRNA_H-akashiwo_Contig8.47.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1984bp|location=Sequence derived from alignment at H-akashiwo_Contig8:2237481..2239464- (Heterosigma akashiwo CCMP452)
GGCAAGATCGGCCATGTGGGGTTCTCCACCCACGCGATGACCCCGCTGAT
CGTTCAGGCCATCGAGACGGGGGAGTTCGACTATGTCAATCTACACTACC
AGGTGTGTGTGTGAAGCTGTATATTTGACTCTTTGGGGCCTAGGGGCTTA
TTTCTGCTCCGAGCAGAAATAAGCCTGTGATATGATATACATGCCAGGTT
CATGGTTGTCATCAGATATATTCAAGATCTGATTGCTCCAAGCTGACATC
AAATAAACTTAATCATGTTCTACTTGGGACATTTTAGTCTTGACGGAACG
AAACAATCTGGCACTAGTTCATGTCCCAAGTAGAACATGATTAATACTAC
AGTCTTGTCAGAGATCAACACCAAAATCAATCAAATAAACTTGTCGTGGA
TTGGGTGTTTTACAACACTGCAGCTTCTCTAATGAAAAGTTTCGCCGCTA
CTGTTCGGCCATGTGACAGGTCCATCATTGCTATCCCAACCCAGAACAGG
AAAAATGAATTCCAGGATTCGAGGAATTAACATTTATTATGAAAATCATT
TTTTTCTGGTTATAGTAGCTTCTTACCTACTACATGTGCTGCTACCAAGT
AAGGATTCTATCTAATATATATATATATATATATACTCTCCTTCATCCAA
GATGGTATGTCGGAGATGATTTACAATCTAATCTTTATTGACAAGTAGGT
GGTGAAGTCCAGGCGCCTCGGTGCAGTCTCTTCTGGTAGAGGCTGCTGCT
CATAAAAATCATGCGCCCTGACCCAGAACTGAGCTGTACACCGACAATGG
ACAGATGATGAGGTCGTACTTCATCCAACTGCGGCCTGGGTGTCTCCAGG
GGAGGACTGCGTCCGGGCTTAGCAGGTGGTTGAGGGGGGGTTGCGGTTTT
TGCCGGCCACTGGAGTTCCCCAGACACGGTCGATGGAAAAAAATTGTACA
AGGTAGCGCCCAAGAGGACGAGCGGAGCTGGCCCATTTTTATGGAGGTTC
CGGCGGCGATATCTCCGGAAGTTCAGGTCAGATTTAAAAGATAAGTACCT
CCCTAAATAGCCAAGATTGAGTCCTATGCGGACTGAGGTCTCCGGTTACC
ATTCGAGACAATTTTAGAATTTTTATTGAAGCTCTTATGTTTTGAATCGT
TGGGATGAGTACATTCGGATATAGCTCGGTCGGCAGCGCTCTTGACTTCC
TTTTTACATCGGGTCCCGTGTGCGAGTCCCACCGCAAGCAGCCCGTCGTC
GACGCGCCGCTTCAGCGGTAAAAGCGCTCGCCGTGCGGAGATCCGAGACG
TCCATACCTCGTACGGTTAAATCAATGCACCGTGAGAGGGGGAGGGCGGT
GCCGCGCCGGCGCACAGAAGAGCCCTGTACGGGAAAAGCAATGAAAATTG
ACTAAAAATGTGTATAAAGTTTACATTTAAAGATCTCACCTTTTTAATAA
ACTTTTACTTTTATCAGCTCCTCTGTAAAAGCATACGGGATTTTAATGGA
ATTTTTCATCATTTTTTTTATAATTATAAAACGAAAAATATGGGCGTTTC
AAAAATCCCGAAAATACCAACACCTTTTAGGAATTCCAAAGAAAATCTTA
CGAGCTTCACGCAGCTCTAAAATTCTTTTGTGGATCCGTTTGTACTATTT
CTTTTATGGATTTTGGTACAGACGCAAAATCAATCTCTCCCTCTTCTCCC
CGCCCGTAGACTTCCCCGGACCGGGCCCAACCCCTCGGAGGGGTTGGGGG
TTGGGCCCGGTCCGGGGAAGTCTACGGGCGGGGAGAAGAGGGAGAGATTG
ATTTTGCGTCTGTACCAAAATACATAAAAGAAAGAGGTTTTTTCCTCCCA
TTAATAGGTTCCGTGTGGTGGTGGGGTCCCTGCGCGCGCGTGCGTGGGCA
GTACGTGGGCAGCTACACGGCCTCCGGCACGGGGCCGGCCACGGGGGGCA
ACCTGGAGGCCGTCCGCGCCGCCCGCGCCCGCGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:2237481..2239464-

>mRNA_H-akashiwo_Contig8.47.1 ID=mRNA_H-akashiwo_Contig8.47.1|Name=mRNA_H-akashiwo_Contig8.47.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=183bp|location=Sequence derived from alignment at H-akashiwo_Contig8:2237481..2239464- (Heterosigma akashiwo CCMP452)
GGCAAGATCGGCCATGTGGGGTTCTCCACCCACGCGATGACCCCGCTGAT
CGTTCAGGCCATCGAGACGGGGGAGTTCGACTATGTCAATCTACACTACC
AGTACGTGGGCAGCTACACGGCCTCCGGCACGGGGCCGGCCACGGGGGGC
AACCTGGAGGCCGTCCGCGCCGCCCGCGCCCGC
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