mRNA_H-akashiwo_Contig8.45.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig8.45.1
Unique Name	mRNA_H-akashiwo_Contig8.45.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

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BLAST of mRNA_H-akashiwo_Contig8.45.1 vs. uniprot
Match: A0A7S3Y469_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y469_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 2.120e-10
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 1

Query:    1 PGCGHRPGVDYAPHVAASPHADKIPILLE 87
            PGCGHRPGVDYAPHVAASPHADKIP LLE
Sbjct:  254 PGCGHRPGVDYAPHVAASPHADKIPGLLE 282

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig8.45.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig8.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A7S3Y469_HETAK	2.120e-10	96.55	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig8	contig	H-akashiwo_Contig8:2212093..2220568 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	166
Hectar predicted targeting category	no signal peptide or anchor
Exons	3
Cds size	165

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387980.912896-CDS-H-akashiwo_Contig8:2212092..2212128	1681387980.912896-CDS-H-akashiwo_Contig8:2212092..2212128	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig8 2212093..2212128 -
1681387980.924441-CDS-H-akashiwo_Contig8:2215708..2215768	1681387980.924441-CDS-H-akashiwo_Contig8:2215708..2215768	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig8 2215709..2215768 -
1681387980.9356475-CDS-H-akashiwo_Contig8:2220499..2220568	1681387980.9356475-CDS-H-akashiwo_Contig8:2220499..2220568	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig8 2220500..2220568 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig8.45.1	prot_H-akashiwo_Contig8.45.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig8 2212093..2220568 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig8:2212093..2220568-
coding sequence from alignment at H-akashiwo_Contig8:2212093..2220568-

protein sequence of mRNA_H-akashiwo_Contig8.45.1

>prot_H-akashiwo_Contig8.45.1 ID=prot_H-akashiwo_Contig8.45.1|Name=mRNA_H-akashiwo_Contig8.45.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
PGCGHRPGVDYAPHVAASPHADKIPILLEEVHEWLRTENVEAQAEWRAEQ
GWCAA

mRNA from alignment at H-akashiwo_Contig8:2212093..2220568-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig8.45.1 ID=mRNA_H-akashiwo_Contig8.45.1|Name=mRNA_H-akashiwo_Contig8.45.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=8476bp|location=Sequence derived from alignment at H-akashiwo_Contig8:2212093..2220568- (Heterosigma akashiwo CCMP452)
CCGGGCTGCGGCCACCGCCCGGGGGTGGACTACGCCCCCCACGTGGCGGC
CAGCCCGCACGCGGACAAGGTGCGGTCTTCGTTCTCCCAGCAAGCCATGA
AAGATGCACTGGTGATGGGTGCTGGGGTCCCTGAGACTGGGATGTGTTAT
GGGCTGTACTGGGGCTGTGGCGCAGCCGTTTTTCTAATCAATAAAAATCT
AAAATGAAGCTTGACTGTTGTTGTAAAGGAGTGATATATGAAAGACCTGG
GCTTTGAAAACAAGCATGTCTATCAAGACCTGAAGCCCCCCAGATTTAAA
ACACACACGCACTTTACATTATCTGGCACAGATCAGCCACACAGCATCGT
GTATTATAGTCAGCAGCATGAGTTACGATTCACTAGACCCGGGTTCGATC
CGTAGTTGGCAACCATCTTGATTGACAACAGGCATGTTGTCATTGTTATG
TATAGCTGGTTTCTCATTATTAGTTTATATAACAATAATACAACACAACC
ATGGAGCGTGGATATCTATCTGAGACAGCATAAACAAGAAGGACGGTGGT
GGTCTTTGTTGTAAATAGTTATTTTTTGGAGCGCAGCAGAAGAAATCACT
GCACATTTCGTTTTTGTCTACGTAGTACACACCATGTTTCATGCTCTTCA
TGGTGCCGGTTCGTCCCCATATCTTTGACAGGGCGCCGTGCACATATATT
ATGTCATCACAAAGTCTCATAAATGCCCTGTGGGTCGTCACTGCATCATC
ACCACTTTCAAAATGGGTAGTCACGCATCATTGCTTCCAAAAAAATGGGT
AGTCACCATGGAAGTCGAAGTTGAATTTTTACATACCCATATCAAAATTC
ATGATTTTCAAGTCTCCTCATTGTACACATCAGTATGAGTTATCTGGTCC
CATCTAAATAAAAGGCCAGGGCTTATATTTTATGGGGGGCGCTTTGGGTG
GGCCTTATACATTACTCCTGGGCCCTATATTACTGGAAATTTCAACATCC
TTCCCCGGGAAAAAGATCGCGACGAAGAGGTCTCGAAAACCGTACCGAAG
AGACGCCCGGAAAAAATCAAAAAATAACAAAGGGGCGCGAATAACAACCT
CCGCCGCAAACGTCGTCGAATTCTTCTGCTGCTGGTGCTGCTGCTGATGG
TCGACATTCGGGTTATAGGACTGTAAGAAGTTCCTATTTTGCGTTTATGA
TTTCCTAAAATTTGTAATAATAAATATTTGGAAGATTTATCGGATAAATG
ATATTGGGTCGCCATAACTCGCCACTTTATCGGGTTTTGGTCGTTTTCAA
AGATAAAGTTGAAAATAATAGCTTCGTAAACTTTTAGCAAAAACGACAAC
GACAACAACAACCAGCAGCAGGAGGAGGAGGACGACGATGATGCAACGAG
GAGCGAGGAGTTCTTAGTACGAAGTAATCTGGGAAACATCCTTACGAGGC
TCAAACTCTCGCACCCACCGTGATCTTGGCTGAAAAATGCCTTGCGCATT
ACTGTTGAGAAATATCACGTCATCAAGGAAAAAAGAAATGGGCGGTCTGT
CGTCATCATCGTTTCAAAAATAGGTGGGTGGTCTGTTGATGACGTAATAT
GTGCACGACGCGCAGGCGGTGTTACTTTCACGGCTGTTTAGCCGAGATCG
CACCGGTCGATACTTGCGGGATTGTTCCGTCAGGCGTGGCGCATTTCCGG
GTCTAGGGCCGCCTGGTCCGTGTTCATTCTCGTCTCACGTCGACATTCCC
CCGCTAATCTCTCAATCGTTCTTGTTCTCAAAATTTGGAGCGCGCGCGAG
GAGAGTTAGCTACCTCTTCGAGGGGCTCGAACCCACAACCTCTTGCTTGC
TCCGAAAGTCGAACTTTCGAACAATTGAGCTATTCTGGGTTGATATTATT
TATCAGAGATAATTCCAAGTAGACAGCTGACACAAACATATTTACTTACA
TACGCGAAGTCTTCCGGGGGAAATATCTTCCTGTTCTAGCTCAGCCCTTC
GGAAGTCGACTTTCGAAACAAGAGGTTGCAGGATCGAATCATGTCGTGCG
GCATATGATGAATTGGCCACAGTTATATGTGTGCTAAAACGGATTGAAAT
TGCGAATCATACTTCGAAATTCGAAACGCGATAGACTATAAGAGATTAGT
GGGGGAATGTCGACGTGAAACAAGAATAAGCACGGACCAGAGCGGCCTTA
GACCTGTAAATGGGCCACGCCTGACGGGATTATCCCGCGAGTATCAGACC
GATGCGATCTCGGTGAATAATCGCGAAAAAAATATTGACTGTCAAGGATA
TGGGGACTGACCGCACCATGAAGAGCATGGTGTTACTATGTAGACAAATA
TATATATATATACATATATATAGGAATATGGAGGCCGGGACTTCGGTCCT
TGTAGTTATCCAAGAGGCGGACTTGAACTAAACTAAAATCATCATCATCA
TCATCATCATATACTATATACTACTATTTTCTATGATTCTACTTCTTGTG
ATGAAGCACCACCGGAGATAATGACGTCCACTTCTAGAGAGGAGGAGGAG
GATAATCTCATTCCGCGCTCCTCGTACCTCGGTGTGTCAGGTGCTCAACA
ATCTGCACACGTGTTCACTTTATCAACGCAAGAAATATTTCATAGACGAC
TTTGTCTTCACATCTGATATGCTTATGACTTCATTGGGCCCCAAGACATT
CTCGATTCCAAAAAATATATATATGAAATGTATCAACAGCTCATCAACAT
CTTGCATTTGTGTCCATGTGGTTGGTGAGCATCACAAAACATGTGCATAT
TATGCATACCCATTTTTCAAAACTTGCTTCTTCCCGCCTGCTTTTATGGG
GATGATGGGGTGCCAACATTGCACAATCAATGAAGGTGGCACTGTCTATC
TGTTCAAACTCTAAATAGGCGCCAGTAGAAATACAGAAGAAATGTTCACT
CTACAATCTGGGTCACTGAAATCGGAAGAATGATAAACTTGCTTAGACCT
GGCCAGCCAGCTCTACCTTCGAAAGGAGGCAGTGATCTCAACCTGCGCAG
AAGGGCCGAGGAAAACCTTTCCTGCCCAAAAGGCTAAATGGACATGGTCA
CGGACTATCCAGAGCTGTCCACCCTCGCATGCCAAGGGTTCTACGGTATC
GGACTTGGGTTCTGCCATATTGGGACCAAATTAGTTCAAATGACTGGCTG
AACATTGTAGAGAGTGGTTTTTGTGCCACCTCATCTCCGAAGAGAGCATC
TTGACAAACAATTTTTTGAAGGAAAGGAAAAATGGCAGCTATTATGCAGT
AACAAGCAGAGAGCAGCAGAGATGATGCAGAAAGAGGTAGCACAGCATGG
ACAAGTCTAACTCTTGTTCTTCAAATTTGAAGTTTCCCTAGAGGCTGCAG
AAACTGCTGGCCTGCAACAGTGGCAGAAGAAACAAAGATGTGTATTGAAA
GCCCACTCCCAAATCCAACCACCCTGCAAAACTGAAGATTGGTATTAGTC
GAAATTCGAGTATTTTGCAGAGAAGCCTGGCGTATCGTGTTCCACATTAT
TAAAGGCCGGGGGGGGGGGGGGGTAATTAAAGGCCGGGGTATAATAGAAG
GCCTCCCCCAGACCCCGGCCTTAATGTGCCAAAATTCCATGTTTTATAAG
ACCTCCCCCAAAAAATCCCCCAAAACCATGTTATAGAAGACCGACTGCAG
ACCCATGTAATAGAAGACCGACTGCAGACCCATGTAATAGAAGACCGACT
GCAGACCCATGCATAGTCTGGTGGTATTCGTCGATCAGTCTCCTTTCGAA
CATCGTCAATGAATAGCTTTTCCTCGGGGCTGCCGTCGTCGTGTATATAT
ATATGTCGTCGTCGTCGTCGTCCTTCTTAAAAGTTTGCAAACTTTTATTA
AAACGTTTTTATTTTAAAATATGAAATTTACGAGTAAAATAGCGATTATT
CGAGGAATATAATTATTTTGGGGGTAAAAAATAAAAAACAAAAGCCAATT
TTTGAAATATGGTATTTAAATGATCAAAATTAGAAAATAAAATGAATTAG
CCGAACTTAGCACAACTTTATCGTATCAACAAAGACGACAGCAGCACAAT
TCACTGACGATCGCAGTCAGACATATTGCGGTCGTTTTCCGATGGCGATG
TATTTTTGATATTATGCGTCATAAGACCTCAAATGTGAAGGTGTTAAATA
CAATCAAAATATGAAGGGTGCCCCAGAGCAGCCAACTACAAAGTTTTTTC
GCGGCCCCCAGTTTTTTTTTTTTTTCTCGGGAGGGCGCGCTTTTTTTTTT
CGAGAGCTCTTGGTCACGAATTTTTTTTTCGGGGGCCGATGTCCAAATTT
CCGTGTAATAGAAGGCCGAGGGTATAATTGAAGGCCGGGGTCAGACCCGG
TCTTAATATATTTAAAGGCCCGGCCTTTAATAATGTGGAACACGATACTA
TAATGTGTACTGTAGCTATTTTTCAAACCATTGTTGTTGTTTTTTTACTT
CATCTTCTTTTATGAGGATGATGGGGGTGCCAGCATTGCACAATCAATGA
AGGCAGCGTCTATCTTTCCATACCATAACTACAGGCATCAGAAGAAATAG
AGGGAGAGAGAAGAGACTATTAGAGAGTGTCCGCGTTCGTCGTTTCCTGC
CACTCCCCCACCGGCGGCTCCGTCTTTTTCCGCGTTCCCGCGCGCCTTCC
TGGCAATGCGTATTATATTTATTTGTGGCACCCTGGCAATGTAATGTATT
ATATCATATATATAATAAATGTATTATCATATAATTAAAAAATGGATCAG
ATCCCTATCCTTCTGGAGGAGGTGCACGAGTGGCTGCGGACGGAGAACGT
CGAGGCGCAGGTACGGCCTCCCGGAAGCATGCATCTCTAGAGAGAGCTAT
TACCAATACTCGAAAGAGTTTTGGCAACAGTAGTAGTATACATAGAGCTC
CAGAAACTTGTGATCGACTTGTGATTCAGTTCACTTTAAGCGGGTTGAAG
ACGACCCCCTGGCCAGATTGAGCGGCAGCCTCTACAAGGAAGCTGGTCAA
TGCGACAAGTTCTGACTAAATAATCAATTCATACCCCTCAACCTTTTAAA
TCTATCTCTTTATTATTATTTTATTATTATCCCTTGTTGTGCGGCTGGTG
GGATGTATTTGATTTTTTTTTTTACACACATAATGTCGTTGTGCACCCCA
ATTGGCAAAGAAAACAACGCGGGGTCGACACTGCCGAGGTTCGTTTTTGC
AGATGGGGAAAGGGCCGGCTGGGGCTGGTGCGGCTGAGAAGTGAGACTGT
TGTTCTTGAGTCGCACAAGTCGAAATTTTTAGACCGAGCACAGAAAGTTT
CAGTTAAAAAGGACACTGAATAAGAGGCCAGCAATATAAATAGCAGTTAT
ATATACAAAATATATTCTTACAGTTGATAGATTTCCGTCATGTCACGACC
AGATTTATTATTATCTAAAGCTTACTTGACGCATTTTAACGTCTGACTAG
ATAGACTGCCATAACTGATCACTCAGTTTGGCACCCTCATCACCATCATC
ACAGTAGGCAGATGTGATTTTTTCAAATTGAAAAAAAAATAGCTACACTA
CAGGCAAACAACATGTAAAAGACTCGAGTTTCGGCCAATTCCAGGCCATA
AGCAGCAGAGGCTGCTGGCTTTCCTTCAGTCTTGCTGGTTGGGTTGGAAA
CGATGAACAAAACAACTTCAGAGTGGTTGCTCTGCTTCCACCTCCATCAG
CCGCTAATGATGCTGCTGTCCCCAAGATGAAAATCTGAGGAGGAAGAAAC
AGTTCTTCTGCATTTGCAATCCCACTTCTTTATGAAGGTTCTATACTGCC
GTCATAATTCATCTTCCTGTGTGGATGGACGCCGCCATGTTTCTCTTAAA
CTTTCGTTTTCCACGGACTGTTTCAAACAGAAATGAAAAAGTGCACAAAT
TAGCTCTCCAAAGATAAGGTCGTCTTTTCTTCTCATTCTTCATAAATGCT
ATGGTGTCTGGTCCTTCACAAATATCAGTTAGCTTGCCCCCAAGATCATT
CACATCAGAGTTTTGGACGTGATGTGAAAACAATCGTGGTACTCGAACGT
ATGATGTGGTGGTGATGTGAAATTTGTTAAAGGAGAAGGAATACAAAACC
CTGAAAGCACATATATACTATAATATAATGTGAAAATAAGTGCTCGTTTC
ACATTTCGAATGTGATTTCTTTTTGACTTGATGTGACTCAAGAAGAACAG
TCTCACATTGAAGCCACACCACCAGAGCATGATCTCTGTCTGGATGAATG
AAGAATGAATAAAGAATGAGATTTATTCATTATTCATAAATTGAAGAAAT
GATGTTCTTGTGTCCAATTGAACCATTCCATAGTGGAATGTTTCAGACTG
GAGCTGAGCGAGCCGCTCTCTTCTTGTTTTGGTGCTCTTCTCAATTGTTG
CATGATAACCGTGCACACATGGGTGATGATGGGAAGAAGGGGCGGGCCTG
GCACTGGTCTCAGGCTCTCCCAAATCACTGGCTATTATAGACAGATGTGT
TCATTTTTATTTGTTGGGGTTGGTTTCATAGAAAACCTTTCCCACCGGTT
TCTGGAAAAACTGGAATCTTTCTCCGCCGCAATCTGAAACGTTCTCTATA
TTTTATACCTGTACCTTTAGATTGTGTTTCTACTTGTAGCAATCAAAAGG
GGCATTTGCATTTCATAGCCTAAAACTAGCTGCAATACTAATGCTCAGAT
CAGTGGTGAACATGAAGAAGAAGTAGAGTAGAATGTTTCCTTAAGCCTGT
GGCTGTTCTCAGTCAAACTGAAGGAATCATGAATGGCAAAAAAAAGACAA
TGGCTGTTCAGCTGCTGGTGGCTCTTTTCTTTCTTTGTTGCGCAATCCCA
CTTCTTCTCACTACCCAGCATAGTTGTCATGGACTTAATGATTAAAAACC
TTTGACATATTGCCTTCTTGGCAGTGTGGAACTATACTCACTGATGTTGA
AAGCGGTTCTCTGTTTAGACCCAACACCCTGCAACATCTTCATTTGGTTA
AATCTTACTGACAATGCGTGTTGACAAAGGCCAGCCACCGGCCTCGGCTG
GTGGTATGCCAGAAACAACGCTGTCCACGTCAGATCTTGTAATGATTTAA
AAACCTTTGATATGTCGCCTCTTTGGCAATGTAGAGATATACTCGCTGGT
GATGGAAGCGGCCTCACTGTTTAACCGCCATGCGCCCACAATAGAAAAAT
GGCCTGCTGGCCCCAACTTTGGGAGACCATATCTCCTGAAGTTCTGGGTC
TTTTTGGCTGGAAAAAAGTGCAATGAATTGGGGAAGAAGTGCTCTATTCA
AATAAACCTTCACCATAGTCACAAAGGGCTTTGGCTCAAAGTTAGGTTTT
CTGCATTTGGGTCATTCTCAGCCAATCATGTTTCAAACAACCAATCAGAA
CAAATCATCAACAACAACAATTGCATTTGCATTCTGATGATTGATGAACA
GCTGGTTGAGGGTAGATGAGGAAGTGTTTTTTTTTTGCTTCAACAATCAA
AAATCCAGAGCGAAGAGAGTGCGACATCGTTTTGGCGAACAGAAGTTGAA
CCTTCGCCGGCTTCAACCCGAAATGCAACGTCAGAGAATTTATGAATTTT
TCAGAATTAAATTATCTTTTTCAATTGTTATGGACCCAGTTGGAAAAATC
AAATGATCATGATTCACAAATTGATATGAAAAGATTGTTATTTTTCGTCA
TCAGCAATCGCTAAAAAACGTCAGTTGTCACTTTTGAACAGCTGGTGGGT
GATGTGGTCTTGTCCTTCTTGTTCGCCTGGTTAAAATCACCGTGAAATCA
GGTCGGCGATTAAAACCTTTTCAAAACCACTTGTAAAGATTTTTGATTTT
TCCAAAAAAAATCCAGCATTCAGAATCTATATATCACACTTCTTTTTTTC
TCAGTTCCGAAAAATGATCAAAACCAGGAAAATGTATATTGGGAAATATT
TGGATTTTCAATGATTTTTTAAAATATCGATATTATTTAAGGCGAATTTT
GAAAAAGAATTCTATCCGGCCAAAAATGGAATTCAAATATTTTATTTGGG
TCTTACAAAGACTTTTAGAAGCAGATGGCGGCGAACAACGATCGACACGA
ACAACAGATGGCCTTGGATGATCGATCCACATCACCTGCATATTACGTAC
GCGCAGCAGCAGATGTTCACAAGCAACTCTTTGACGTATGCTGTACTCAA
CAACCAATCCGTGCCGCGTAGAACGGAATGATTGGCTGAGATCAAAAATG
ATCCAATTGGATCATTTGGGCGCATAGCAGTTAAACCCAACACCTCAACA
AAAGAAAGTTCCTAATCCCCTGCCACCTTAATTTATAGTCACCGACCTTG
CCATTCTTTTTGTTCTTTTATTTTTCTGCTTGTTTTTCAGGCGGAGTGGC
GGGCTGAGCAGGGATGGTGTGCTGCG

Coding sequence (CDS) from alignment at H-akashiwo_Contig8:2212093..2220568-

>mRNA_H-akashiwo_Contig8.45.1 ID=mRNA_H-akashiwo_Contig8.45.1|Name=mRNA_H-akashiwo_Contig8.45.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig8:2212093..2220568- (Heterosigma akashiwo CCMP452)
CCGGGCTGCGGCCACCGCCCGGGGGTGGACTACGCCCCCCACGTGGCGGC
CAGCCCGCACGCGGACAAGATCCCTATCCTTCTGGAGGAGGTGCACGAGT
GGCTGCGGACGGAGAACGTCGAGGCGCAGGCGGAGTGGCGGGCTGAGCAG
GGATGGTGTGCTGCG