mRNA_H-akashiwo_Contig8.139.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.139.1
Unique NamemRNA_H-akashiwo_Contig8.139.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.139.1 vs. uniprot
Match: A0A7S3UXH3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXH3_HETAK)

HSP 1 Score: 789 bits (2038), Expect = 2.650e-284
Identity = 491/491 (100.00%), Postives = 491/491 (100.00%), Query Frame = 1 
Query:    1 MAARKSGKKKRAEANSLKKAAALEAATQNAHQNGTKSGADLEKKKSDIALKVAEAQQKXXXXXXXXXXXXXXXXXXXXGVIKILDSLAPGSEGISSIYPPVVEMEVEVLEPMTEEDSVEDEEIYPPVVEEXXXXXXXXXXXXXGEKTGEEAEVKKDESNGQIEADDQSLSEAADNLNSLAEDLENXXXXXXXXXXXXXXXXXXXXXLIERQRLSAFKDLSEMYLRQRADSESRRMVYGVPSGQEEVEAQDATAAANPKPDTKPSSPLGPDEPAYTPKVGDEVMTQFGRGEVAEVRGSGAEATLVVKTTEWRMALDQPATLYLQPAAVGPAPPKKSYQMTTDDKLRKARALKDEGAGRFQEKDYAGAQALYFQCVGYLRYIGEETTSAQRAQVNELLLPCYNNMALCLLRLGRHQDAVVAASNALLLSDALQASANSVAVLRELARRGVGEDTLFVRWPLKSLGLLGKALLKQNEYDRAVEHLERGVDLAGR 1473
            MAARKSGKKKRAEANSLKKAAALEAATQNAHQNGTKSGADLEKKKSDIALKVAEAQQKXXXXXXXXXXXXXXXXXXXXGVIKILDSLAPGSEGISSIYPPVVEMEVEVLEPMTEEDSVEDEEIYPPVVEEXXXXXXXXXXXXXGEKTGEEAEVKKDESNGQIEADDQSLSEAADNLNSLAEDLENXXXXXXXXXXXXXXXXXXXXXLIERQRLSAFKDLSEMYLRQRADSESRRMVYGVPSGQEEVEAQDATAAANPKPDTKPSSPLGPDEPAYTPKVGDEVMTQFGRGEVAEVRGSGAEATLVVKTTEWRMALDQPATLYLQPAAVGPAPPKKSYQMTTDDKLRKARALKDEGAGRFQEKDYAGAQALYFQCVGYLRYIGEETTSAQRAQVNELLLPCYNNMALCLLRLGRHQDAVVAASNALLLSDALQASANSVAVLRELARRGVGEDTLFVRWPLKSLGLLGKALLKQNEYDRAVEHLERGVDLAGR
Sbjct:    1 MAARKSGKKKRAEANSLKKAAALEAATQNAHQNGTKSGADLEKKKSDIALKVAEAQQKXXXXXXXXXXXXXXXXXXXXGVIKILDSLAPGSEGISSIYPPVVEMEVEVLEPMTEEDSVEDEEIYPPVVEEXXXXXXXXXXXXXGEKTGEEAEVKKDESNGQIEADDQSLSEAADNLNSLAEDLENXXXXXXXXXXXXXXXXXXXXXLIERQRLSAFKDLSEMYLRQRADSESRRMVYGVPSGQEEVEAQDATAAANPKPDTKPSSPLGPDEPAYTPKVGDEVMTQFGRGEVAEVRGSGAEATLVVKTTEWRMALDQPATLYLQPAAVGPAPPKKSYQMTTDDKLRKARALKDEGAGRFQEKDYAGAQALYFQCVGYLRYIGEETTSAQRAQVNELLLPCYNNMALCLLRLGRHQDAVVAASNALLLSDALQASANSVAVLRELARRGVGEDTLFVRWPLKSLGLLGKALLKQNEYDRAVEHLERGVDLAGR 491
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BLAST of mRNA_H-akashiwo_Contig8.139.1 vs. uniprot
Match: A0A6V1QZZ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QZZ7_HETAK)

HSP 1 Score: 139 bits (351), Expect = 1.230e-32
Identity = 110/291 (37.80%), Postives = 154/291 (52.92%), Query Frame = 1 
Query:  625 ERQRLSAFKDLSEMYLRQRADSESRRMVYGVPSGQEEVEAQDATAAANPKPDTKPSSPLGPDEPAYTPKVGDEVMTQFGRGEVAEVRGS---GAEATLVVKTTEWRMALDQPATLYLQPAAVGPAPPKKSYQMTTDDKLRKARALKDEGAGRFQEKDYAGAQALYFQCVGYLRYIGEETTSAQRAQVNELLLPCYNNMALCLLRLGRHQD-------AVVAASNALLLSDALQASANSVAVLRELARRGVGEDTLFVRWPLKSLGLLGKALLKQNEYDRAVEHLERGVDLA 1467
            +  +LSA++D+S+MYL  +A S     V+               +A  P P  +P  P       Y P+ GDEV+TQFGRG V EVR     G E  +VVKTT+W+MA +QPATLYLQ   +  A   +S  +++  + ++ARAL+        +++Y  AQA Y + +  L   GE     QR    ELL+P YN+MA C L+L  H         A   A++AL L+D + A+    A    L R       L V+WP+ SL +LG+ALLK+ EY  A  +LERGV LA
Sbjct:   51 QESQLSAYRDISKMYLHNQALS---AFVW---------------SAHTPSP-KEPPCPPSVIPIKYEPQPGDEVITQFGRGIVDEVRKKRKGGDENLVVVKTTQWQMAGNQPATLYLQAGVIAQANDGESGGVSSK-RFQEARALRRSAVALCGQQEYGRAQATYARAITLLEGAGE----GQRTSALELLIPSYNDMAWCSLQLSEHSGGLADCAHAAQLAASALRLADDMWANEGGDAAAANLDRL-----KLAVQWPVASLTVLGEALLKKGEYHAAATYLERGVRLA 312
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BLAST of mRNA_H-akashiwo_Contig8.139.1 vs. uniprot
Match: A0A1E7EXX7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EXX7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 5.960e-26
Identity = 71/220 (32.27%), Postives = 122/220 (55.45%), Query Frame = 1 
Query:  808 DEPAYTPKVGDEVMTQFGRGEVAEVRGSGAEATLVVKTTEWRMALDQPATLYLQPAAVGPAPPKKSYQMTTDDKLRKARALKDEGAGRFQEKDYAGAQALYFQCVGYLRYI--GEETTSAQRAQVNELLLPCYNNMALCLLRLGRHQDAVVAASNALLLSDALQASANSVAVLRELARRGVGEDTLFVRWPLKSLGLLGKALLKQNEYDRAVEHLERGVD 1461
            D P+ +P V D+VMTQFGRG++ E+R      T VVK + WR+A       YL         P + Y M   +K+  A  LK +   +F  KDY GA  +Y + V  +RY+  G+++T+  RA +  +++ C NN +LC  +    +     A+N+L+L DAL++  ++  + + L   G+ +  LF  W +KSL L+ KA +++N+  +A+  L++ ++
Sbjct:   86 DFPSISPTVDDDVMTQFGRGKIVEIRNDDRN-THVVKLSSWRLAGRSSVFCYLTSKECTVMRPYRFYDMDVFEKVEHANDLKKDATSKFSSKDYDGALEIYAKAVDTVRYVQHGKDSTNELRADLIVVMITCSNNASLCSSKKKDWERTEKFAANSLVLIDALESKKDTSKIRKILNNDGIKDSQLFGTWKVKSLILIAKAQMERNDTSKAINTLKKALE 304
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3UXH3_HETAK2.650e-284100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1QZZ7_HETAK1.230e-3237.80Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7EXX7_9STRA5.960e-2632.27Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:6382811..6384283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNS0
Model size1474
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.48e-26
EggNOG OGs2E2VZ@1|root,2SA27@2759|Eukaryota
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-08_006070.1
Cds size1473
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387985.9072082-CDS-H-akashiwo_Contig8:6382810..63842831681387985.9072082-CDS-H-akashiwo_Contig8:6382810..6384283Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 6382811..6384283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.139.1prot_H-akashiwo_Contig8.139.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 6382811..6384283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.139.1

>prot_H-akashiwo_Contig8.139.1 ID=prot_H-akashiwo_Contig8.139.1|Name=mRNA_H-akashiwo_Contig8.139.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=491bp
MAARKSGKKKRAEANSLKKAAALEAATQNAHQNGTKSGADLEKKKSDIAL
KVAEAQQKQKEQEEAAAAFGAPGGDGGGGVIKILDSLAPGSEGISSIYPP
VVEMEVEVLEPMTEEDSVEDEEIYPPVVEEVLEPMSEEDSVEDGEKTGEE
AEVKKDESNGQIEADDQSLSEAADNLNSLAEDLENESLSDSAENLNGVAA
ELEQASLIERQRLSAFKDLSEMYLRQRADSESRRMVYGVPSGQEEVEAQD
ATAAANPKPDTKPSSPLGPDEPAYTPKVGDEVMTQFGRGEVAEVRGSGAE
ATLVVKTTEWRMALDQPATLYLQPAAVGPAPPKKSYQMTTDDKLRKARAL
KDEGAGRFQEKDYAGAQALYFQCVGYLRYIGEETTSAQRAQVNELLLPCY
NNMALCLLRLGRHQDAVVAASNALLLSDALQASANSVAVLRELARRGVGE
DTLFVRWPLKSLGLLGKALLKQNEYDRAVEHLERGVDLAGR
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mRNA from alignment at H-akashiwo_Contig8:6382811..6384283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.139.1 ID=mRNA_H-akashiwo_Contig8.139.1|Name=mRNA_H-akashiwo_Contig8.139.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1473bp|location=Sequence derived from alignment at H-akashiwo_Contig8:6382811..6384283+ (Heterosigma akashiwo CCMP452)
ATGGCCGCAAGGAAAAGTGGTAAGAAAAAGAGAGCAGAGGCCAACAGCTT
GAAAAAAGCAGCGGCATTGGAAGCAGCCACCCAGAATGCACACCAAAACG
GGACGAAATCGGGGGCAGATTTAGAAAAAAAGAAGTCCGACATTGCTCTC
AAAGTCGCAGAAGCCCAGCAAAAACAAAAAGAACAAGAAGAGGCCGCGGC
AGCTTTCGGGGCCCCGGGTGGTGATGGTGGTGGTGGTGTCATCAAAATTT
TGGATTCACTTGCACCAGGAAGTGAGGGGATCTCGAGCATTTATCCTCCA
GTCGTGGAGATGGAGGTGGAAGTTCTCGAACCAATGACAGAGGAGGACTC
GGTTGAGGATGAGGAGATTTATCCTCCAGTCGTGGAGGAAGTTCTCGAAC
CAATGTCAGAGGAGGACTCGGTTGAGGATGGAGAGAAGACAGGGGAAGAG
GCTGAGGTGAAGAAAGACGAAAGTAACGGCCAGATTGAAGCAGATGACCA
GAGCTTGTCTGAAGCAGCTGACAACTTGAACTCGTTGGCCGAGGACTTGG
AAAATGAAAGCCTCAGCGACAGTGCAGAAAACTTGAATGGCGTGGCTGCT
GAATTAGAACAAGCATCGTTGATTGAAAGGCAAAGACTCTCAGCGTTTAA
GGACCTGAGTGAGATGTATTTGCGCCAACGGGCAGACTCTGAGTCTCGGC
GAATGGTGTACGGTGTACCTTCGGGTCAGGAGGAGGTTGAAGCCCAAGAC
GCAACTGCAGCCGCGAACCCAAAGCCAGACACTAAGCCATCCTCCCCCCT
TGGCCCTGACGAACCAGCCTATACGCCGAAGGTTGGGGACGAGGTCATGA
CGCAGTTTGGGCGCGGCGAGGTTGCCGAAGTGCGGGGGAGTGGCGCGGAG
GCCACCCTGGTGGTGAAAACCACCGAGTGGCGGATGGCCCTCGACCAGCC
GGCCACCCTCTATTTGCAGCCGGCGGCCGTGGGTCCCGCCCCGCCGAAGA
AGAGCTACCAGATGACCACGGACGACAAGCTGCGGAAGGCGCGGGCGCTG
AAGGACGAGGGCGCGGGTCGGTTCCAGGAGAAGGACTATGCGGGCGCCCA
GGCGCTGTACTTCCAGTGCGTCGGTTACCTGCGGTACATTGGGGAGGAGA
CCACCAGCGCCCAGCGGGCCCAGGTGAACGAGCTGCTGCTGCCCTGCTAC
AACAACATGGCCCTGTGCCTGCTGCGGCTGGGCCGGCACCAGGACGCGGT
CGTGGCGGCCTCCAACGCGCTCCTGCTGTCCGACGCCCTCCAGGCCAGCG
CGAACAGCGTGGCGGTCCTCCGGGAGCTGGCCCGGCGGGGCGTGGGCGAG
GACACGCTCTTCGTGCGGTGGCCGCTCAAGTCGCTGGGCCTGCTGGGCAA
GGCGCTGCTGAAGCAGAACGAGTACGACCGGGCCGTGGAGCACTTGGAGC
GCGGGGTGGACTTGGCCGGCCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:6382811..6384283+

>mRNA_H-akashiwo_Contig8.139.1 ID=mRNA_H-akashiwo_Contig8.139.1|Name=mRNA_H-akashiwo_Contig8.139.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1473bp|location=Sequence derived from alignment at H-akashiwo_Contig8:6382811..6384283+ (Heterosigma akashiwo CCMP452)
ATGGCCGCAAGGAAAAGTGGTAAGAAAAAGAGAGCAGAGGCCAACAGCTT
GAAAAAAGCAGCGGCATTGGAAGCAGCCACCCAGAATGCACACCAAAACG
GGACGAAATCGGGGGCAGATTTAGAAAAAAAGAAGTCCGACATTGCTCTC
AAAGTCGCAGAAGCCCAGCAAAAACAAAAAGAACAAGAAGAGGCCGCGGC
AGCTTTCGGGGCCCCGGGTGGTGATGGTGGTGGTGGTGTCATCAAAATTT
TGGATTCACTTGCACCAGGAAGTGAGGGGATCTCGAGCATTTATCCTCCA
GTCGTGGAGATGGAGGTGGAAGTTCTCGAACCAATGACAGAGGAGGACTC
GGTTGAGGATGAGGAGATTTATCCTCCAGTCGTGGAGGAAGTTCTCGAAC
CAATGTCAGAGGAGGACTCGGTTGAGGATGGAGAGAAGACAGGGGAAGAG
GCTGAGGTGAAGAAAGACGAAAGTAACGGCCAGATTGAAGCAGATGACCA
GAGCTTGTCTGAAGCAGCTGACAACTTGAACTCGTTGGCCGAGGACTTGG
AAAATGAAAGCCTCAGCGACAGTGCAGAAAACTTGAATGGCGTGGCTGCT
GAATTAGAACAAGCATCGTTGATTGAAAGGCAAAGACTCTCAGCGTTTAA
GGACCTGAGTGAGATGTATTTGCGCCAACGGGCAGACTCTGAGTCTCGGC
GAATGGTGTACGGTGTACCTTCGGGTCAGGAGGAGGTTGAAGCCCAAGAC
GCAACTGCAGCCGCGAACCCAAAGCCAGACACTAAGCCATCCTCCCCCCT
TGGCCCTGACGAACCAGCCTATACGCCGAAGGTTGGGGACGAGGTCATGA
CGCAGTTTGGGCGCGGCGAGGTTGCCGAAGTGCGGGGGAGTGGCGCGGAG
GCCACCCTGGTGGTGAAAACCACCGAGTGGCGGATGGCCCTCGACCAGCC
GGCCACCCTCTATTTGCAGCCGGCGGCCGTGGGTCCCGCCCCGCCGAAGA
AGAGCTACCAGATGACCACGGACGACAAGCTGCGGAAGGCGCGGGCGCTG
AAGGACGAGGGCGCGGGTCGGTTCCAGGAGAAGGACTATGCGGGCGCCCA
GGCGCTGTACTTCCAGTGCGTCGGTTACCTGCGGTACATTGGGGAGGAGA
CCACCAGCGCCCAGCGGGCCCAGGTGAACGAGCTGCTGCTGCCCTGCTAC
AACAACATGGCCCTGTGCCTGCTGCGGCTGGGCCGGCACCAGGACGCGGT
CGTGGCGGCCTCCAACGCGCTCCTGCTGTCCGACGCCCTCCAGGCCAGCG
CGAACAGCGTGGCGGTCCTCCGGGAGCTGGCCCGGCGGGGCGTGGGCGAG
GACACGCTCTTCGTGCGGTGGCCGCTCAAGTCGCTGGGCCTGCTGGGCAA
GGCGCTGCTGAAGCAGAACGAGTACGACCGGGCCGTGGAGCACTTGGAGC
GCGGGGTGGACTTGGCCGGCCGG
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