mRNA_H-akashiwo_Contig8.114.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.114.1
Unique NamemRNA_H-akashiwo_Contig8.114.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.114.1 vs. uniprot
Match: A0A6S9HN51_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HN51_HETAK)

HSP 1 Score: 63.2 bits (152), Expect = 1.380e-9
Identity = 37/49 (75.51%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:    3 HGFLPGSRTTALLGAPAWASRGAAAAAAGVAALGAVLVVCARLLFAPYG 149
            HG        A    PAWASRGAAAAAAGVAALGAVLVVCARLLFAPYG
Sbjct:   55 HGLYRKPGQPARAAPPAWASRGAAAAAAGVAALGAVLVVCARLLFAPYG 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6S9HN51_HETAK1.380e-975.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:5261931..5262570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size641
Hectar predicted targeting categoryother localisation
Exons1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.2168005-CDS-H-akashiwo_Contig8:5261930..52622721681387982.2168005-CDS-H-akashiwo_Contig8:5261930..5262272Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 5261931..5262272 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.2293699-UTR-H-akashiwo_Contig8:5262272..52625701681387982.2293699-UTR-H-akashiwo_Contig8:5262272..5262570Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig8 5262273..5262570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.114.1prot_H-akashiwo_Contig8.114.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 5261931..5262272 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.114.1

>prot_H-akashiwo_Contig8.114.1 ID=prot_H-akashiwo_Contig8.114.1|Name=mRNA_H-akashiwo_Contig8.114.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
GTGFYLEAGQPRCWALLLGRRGGRRRRRPGSRLWARSWWSAQGCYLPPTA
DAASPLLAPAKPPDGGGVLPSLPLPTRLPPPGKGRGKEFRETRAGSGSTE
STRGVTPCLTRQA*
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mRNA from alignment at H-akashiwo_Contig8:5261931..5262570+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.114.1 ID=mRNA_H-akashiwo_Contig8.114.1|Name=mRNA_H-akashiwo_Contig8.114.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=640bp|location=Sequence derived from alignment at H-akashiwo_Contig8:5261931..5262570+ (Heterosigma akashiwo CCMP452)
GGCACGGGTTTTTACCTGGAAGCCGGACAACCGCGCTGCTGGGCGCTCCT
GCTTGGGCGTCGCGGGGGGCGGCGGCGGCGGCGGCCGGGGTCGCGGCTCT
GGGCGCGGTCCTGGTGGTCTGCGCAAGGTTGTTATTTGCCCCCTACGGCT
GATGCTGCCTCCCCACTGCTGGCGCCGGCCAAGCCGCCGGATGGGGGAGG
TGTTCTTCCCTCTCTGCCGCTGCCGACGCGGTTGCCCCCTCCTGGGAAAG
GACGGGGGAAGGAGTTTCGCGAGACGAGGGCTGGGAGCGGCAGCACTGAG
TCGACCAGGGGTGTCACTCCATGTCTGACACGGCAAGCCTAGGGATGGCG
CAGGCACCAGCAGCAGGGCCATCGGTGGTGGCAACCTATAGCAGCGCGGT
TGCAAAAAAATGATGGCGGTGGCCCAGAGGGGGTATAGCGGTTTTCCTTA
AGAGGAACGAAGGGGAGCGAGAGACTAGGATCACTCTGTTGAAGAAGCCG
GGTGATTCTGCTGTACTGGGCTGGTTGGATGTTGCTGCCCACCATTGCCC
TTGGGGCACTGGTAGGAGCTTCGCCACAATCCAGAAGAAAGACATCCGCC
ATAAGTAATAAAAAGCTGTAGCATGCTGTGAAATATGAAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:5261931..5262570+

>mRNA_H-akashiwo_Contig8.114.1 ID=mRNA_H-akashiwo_Contig8.114.1|Name=mRNA_H-akashiwo_Contig8.114.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig8:5261931..5262570+ (Heterosigma akashiwo CCMP452)
GGCACGGGTTTTTACCTGGAAGCCGGACAACCGCGCTGCTGGGCGCTCCT
GCTTGGGCGTCGCGGGGGGCGGCGGCGGCGGCGGCCGGGGTCGCGGCTCT
GGGCGCGGTCCTGGTGGTCTGCGCAAGGTTGTTATTTGCCCCCTACGGCT
GATGCTGCCTCCCCACTGCTGGCGCCGGCCAAGCCGCCGGATGGGGGAGG
TGTTCTTCCCTCTCTGCCGCTGCCGACGCGGTTGCCCCCTCCTGGGAAAG
GACGGGGGAAGGAGTTTCGCGAGACGAGGGCTGGGAGCGGCAGCACTGAG
TCGACCAGGGGTGTCACTCCATGTCTGACACGGCAAGCCTAG
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