mRNA_H-akashiwo_Contig8.105.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.105.1
Unique NamemRNA_H-akashiwo_Contig8.105.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.105.1 vs. uniprot
Match: A0A7S3UTQ7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTQ7_HETAK)

HSP 1 Score: 159 bits (403), Expect = 2.730e-48
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 2 
Query:    2 AELNEMMTWLHRAVFSNLRVALQNIEYDANDEVNWPTFARFTVQYPFVIFPAYRIQKTLRKKTFGERWWVRKED 223
            AELNEMMTWLHRAVFSNLRVALQNIEYDANDEVNWPTFARFTVQYPFVIFPAYRIQKTLRKKTFGERWWVRKED
Sbjct:   62 AELNEMMTWLHRAVFSNLRVALQNIEYDANDEVNWPTFARFTVQYPFVIFPAYRIQKTLRKKTFGERWWVRKED 135
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BLAST of mRNA_H-akashiwo_Contig8.105.1 vs. uniprot
Match: A0A6S8V9R4_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V9R4_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 7.420e-9
Identity = 30/77 (38.96%), Postives = 51/77 (66.23%), Query Frame = 2 
Query:    5 ELNEMMTWLHRAV----FS-NLRVALQNIEYDANDEVNWPTFARFTVQYPFVIFPAYRIQKTLRKKTFGERWWVRKE 220
            EL  M+  L+  V    FS N R AL+ ++++ +++V+W  F RF V +P + +PA+RIQ+T+  +T G+RWW +K+
Sbjct:  118 ELELMLRVLYHIVPPNDFSGNTRNALELLDFNDDEKVDWQEFNRFHVLFPALFYPAFRIQQTMITQTMGQRWWDKKK 194
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BLAST of mRNA_H-akashiwo_Contig8.105.1 vs. uniprot
Match: A0A2R5GBM9_9STRA (Calcium-dependent protein kinase 12 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBM9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.170e-6
Identity = 23/69 (33.33%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:    5 ELNEMMTWLH---RAVFSNLRVALQNIEYDANDEVNWPTFARFTVQYPFVIFPAYRIQKTLRKKTFGER 202
            EL+++++ LH      F N+ + LQ  + + +  +N+  F +   Q+P+V++PA+R+QK + +KTFG R
Sbjct:  261 ELHQLVSLLHGDEEQRFYNIELVLQKFDQNLDGVINFEEFQQINRQHPYVLYPAFRMQKRIEEKTFGSR 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3UTQ7_HETAK2.730e-48100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6S8V9R4_9STRA7.420e-938.96Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A2R5GBM9_9STRA2.170e-633.33Calcium-dependent protein kinase 12 n=1 Tax=Hondae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:4756643..4764228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons3
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387981.4659002-CDS-H-akashiwo_Contig8:4756642..47567391681387981.4659002-CDS-H-akashiwo_Contig8:4756642..4756739Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4756643..4756739 +
1681387981.4800963-CDS-H-akashiwo_Contig8:4757657..47577221681387981.4800963-CDS-H-akashiwo_Contig8:4757657..4757722Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4757658..4757722 +
1681387981.4952962-CDS-H-akashiwo_Contig8:4764165..47642281681387981.4952962-CDS-H-akashiwo_Contig8:4764165..4764228Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 4764166..4764228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.105.1prot_H-akashiwo_Contig8.105.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 4756643..4764228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.105.1

>prot_H-akashiwo_Contig8.105.1 ID=prot_H-akashiwo_Contig8.105.1|Name=mRNA_H-akashiwo_Contig8.105.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=75bp
GGAERDDDLASPGGVLQPARSLAEHRVRRQRRGELADLCALHRSVPLRHL
PGLPNTENPSEKNFWGAMVGKKRG*
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mRNA from alignment at H-akashiwo_Contig8:4756643..4764228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.105.1 ID=mRNA_H-akashiwo_Contig8.105.1|Name=mRNA_H-akashiwo_Contig8.105.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7586bp|location=Sequence derived from alignment at H-akashiwo_Contig8:4756643..4764228+ (Heterosigma akashiwo CCMP452)
GGCGGAGCTGAACGAGATGATGACCTGGCTTCACCGGGCGGTGTTCTCCA
ACCTGCGCGTAGCCTTGCAGAACATCGAGTACGACGCCAACGACGAGGCA
AGCGACGCCGTCCGCACCTGTTGTCGCTGGCTTCTGTGTGTACAGAATAT
ACTCACTGCACCACCGCATGACACGCGCTCTGCAATGTGCTGCAATGTGG
GGGGAAGATCAGCGCGAATCGATGGAATGTGGCTGGGCGAGCCAGTATGA
GTTTTTTTTCGTTGGCGACTAGAGGTAAAAATTGAAAAGAGAAAGGCATC
GGGTCCATATGTAGAGGCCAGGGAATACATGGCCTTTTGCAAGTGGCGGT
TGTTGAAACATGAGCACTACCTACCGTTCATGAGGCCGGTTTGTGGAAGT
CACATTCCATAAGCTTGAAAAACGGGCTAGGAAGCAGCACTCGTGCTGCG
AAAACAGGGGTGGACCGCACCAGTCTTGGTGATACCATCCCGACCCGCGG
GAAGGAGAAGAAGCACTCATCGATGGATGTGAGTTGTCGGAAGAAGCGCC
TACGGTAGGGACAACTGAAAGAGGGCGATGAGGTCAAAGGGCAATAGAGC
ATGTAGGGTTAAGGATAGCTGGAACTTCGGTTGGTCAGTAATCAGACTTG
GCTCGACGAAATGCTCAGGTGTCAAGGCAGCCTGCAAATAGACGGTGGTT
GTGTGGTTCAGGATGTGAAGGAACGCATTGCAAGTAGAAACGTATACAAA
AAAAAAAATGTGAGCTAAGGACTGTTTTTGGTGATTGTATCCACTGCTAG
AGGTAAGAAGAAGAAGAACCAGTAGAGTACCAGCAGCATAAGGCAGTCTT
TGAGGGACTACTCCAGAATAACAATAAATAATAATATTGGCGATAGCAGA
TTCCCAGTTGTTGTCTTCAAGATCTCATTGGTTGTAATTCCCAAACATAA
GCCAAAGTAGAATCTGATTGGAAGAAAAGGAAGGAAGAAAATGAAGAAAC
CCCCCGCCCACCCAGGTGAACTGGCCGACCTTTGCGCGCTTCACCGTTCA
GTACCCCTTCGTCATCTTCCCGGCTTACCGGTGAGCCGTATACCACACGT
GTTGTTGTTGCCTGAGGGCGGGGGTGGGGTGTGTGTGCAAGGGGGAGGTG
CACGCAGCTTTCCATGATCTCGCACTGCTATGTACCATGGCACTTGTAGT
TAGCTGAGGTAAACCGTTGGTCACAACTCATAGAAGATCTGAATATTTAC
ATATCTTAGCTTACGATGATGATGGTGGTGGTTTTAATTTATTTAAGGTC
CAGCCTTTTGGAGGATAACTACAAGGACCAAAGTCCCGGCCTCCATACAT
GTGTCTTAGCTTACGAGCACCCTAAGTAAGAACATTGAGTGGAAGGCGGC
GCCGCGAGTGCAACAGGCGGGATGGGGGTGGGTTGGAGGGCTGGCCCGGG
AGGGCTGGGGCCTGGTGGGGTGGGGTGGGGCATGCTAGGCCTAGGGATCA
TTGCCACTTTGTTTGTGTTTGTGAGACGCCTATTGCTTTTTTTGGTGCTG
TGTCTGTATCTCCAGAACACGGATACCTCTCCCATTGTGGCCTGCTTTAG
GTGTGCTTGTGTTGTGTGCACTATTTTTGTTGTGAGCAATATGTAGTTGT
TGGGTTTGGCTATAAAAGTGTGTCTGCTTGAGCTTGTTGGCTTTGACCGT
TCAGCTCCAAAAATAATTTGAACGGTGAGAATGGAAAATTGATTTACAAG
ACCACCAGCAAAGCTTTAGGCAGAACAAGATGTTAGCCCAGTCTAATGCT
TCACAGATCGCCATTATCAAAGATGTAGAGGCCAGGGTCAAATTGCTGCT
AAGCGCATGAAATTTGACATCATGAAGCTATAATGTCTGATTCCAATACT
TATATAAAAAGGTCTGTGGAATTATTTGGACAATAATATGATATTGATCA
TCAATTTTCACATCTCCCTGGTTACTGTAATGATGGCGATGGAGGCGGTG
CCAAACTGAGTGATCAGTGCTGGCACAGTCCATCTAGTCAAGACATTAAA
ATGTGTCAAGTAAGTTTTAGGTAATAATGATCATCATCATCATCATGCTG
AAGCGGTGAAGGAATTGGTGTTTGCTGCATTAAAAAATATAGTTCTCTTC
CTACTCTTTTCGAATGGAGAACATTCCAGGACTATTCCTGGAACGTTCCG
GAATGTTCTGAATATCACCCTTAAGAACGTTCCGGAACGTTCCTCTCATA
TCATCTGAACACTTTGTTGAACGATGTGTCACAAGTGTTAGCCAGATTAA
AGTTCCAACTGTGCAAAGTCCTACAAATCAAAGTTGCGATTGTGCAAAGC
CCCTGCATGCCTATGTTGTCCTTTGGCTCAAGCCCAGTCTTTCAATTGTT
TCTTTCCTTAGGCTTACTCCCATTCATGCTCCTGGCCAGTGCACCTGTTC
CTCCCTGTGAGTCGAGATGGCTTTGGTGGACGTGGGCATTCCACCTCTGG
TGGCGAAGCACCAGGGGCTTCTCACCATGGCAGCTATACCTTTGAAGTTC
GAGGAATCTCTAGGATCAGCCTACGAATACTGGCCGCCTGCTTGTTACGG
AAGCTACTGCCAACGCCTATGTATACCAGTTCCACAGGGCCATTCCGTGA
AGGTTATGAATCAAGATAAATGCGCCCAGAGTAGGTATCCTGTCAACCGC
ACAATATCATTATCATCATCAACACCATTGAAAATATAATAATATCATCA
AAAATGGCAAATAGTGACAAGGACCAAGGCATGATGCTGGACGACCACTG
TAACAATTCATAACAGGCCTCCATGTCGTTCTCAATTTAACTGATTACAA
ATCCCATCAGAAAACATCCACCCTCTTTGTTTACTTCACCTCCTACATTT
AGCCCCTAAAGTTTTTTTCATTATCTTCTGTTTTCCAGCAGGAAAACACG
TCCGGTGTGTGTATTGTCAGCTTGGCTGTGACCCCAAGGGTGGACGACAA
CGATGACCGTGGCGGCCCGGGATAAAGCCGCAATGCGTGCCTCCGGGCAC
GAGCATCATCAAGTGATGAGGCAATCTTGATGATGAAGTTCAGATGTTAT
TGTAGCATCATATGTTATGGAGAATAAAATAATAATGGCCAAGCTTAATT
AGAAGAAGAGGAGTTTAGCTAATAAGAAGTGAGGATAAAATAGGCCTGGC
AATGGCAGCATGGGAGAATAGCAGCAGAAAATAGCGTAAAATTAATATAT
AACCATTTTCACCAAGGAAAACCCAGACAGCCATTATGCCCTTCCCCCGC
CATGGTCGCGAAAGATAATAGCAAAGAGCCTGTTTGGAGCAGTTTCGAGG
AGTTTCGAGCTCTTCTAGAATGGTCCGGATCTGGTGGGCGGCCTCTGGTT
TATGGTGGGTTGGTTGCCGCTGCTTTGGTTGACTGTTTGCAAGAGGTCGA
TTTTTGCAGAAGTGGGGGCGGGTGGTTTATCCTGCAGCCTGCAAAGAATG
GCATTGGTGATGAACTGTTCTGAAAGAGGCTCCGTTCATACCTGGTCGCC
GTGAGTGCGAAACCCTGGGCTGAAAGAGGCCCAACACCTGAGCTGAAATA
GGCCTAATAACTGGTCTGCAAGAGGGCCGTTCCAAAATTCTTATTGTCTT
GATTGCAAGATACCAGGATGACTTATCGCCGTGAGTGCGAAAGGACAAAG
TGAAAACAAGCGGTGTTCGATTGTTGCTGTGAGTACACAATTCTTCGTCA
TCAAAAACAATGCCAGACGCTGTGGCAGCGCCCAGTCGTGTGAGGAGGAA
ATAAGTGCAAGACCAGCAAGAAGGGATCAACAACTGAGGACAAGTGACAG
AGTCCAACATGGTGTACCTCTCGGCAGGAGGGGATATCTTACAGCAGTGT
TGCTGGAGGTAGCAACAACAACAACAAAGTGTGACACTATTTCAACATGG
CATGGAACTGGAGATGGTGCAGCAGTGTTTAGTGGCAGCAGTGTTTGATG
GCAGAGCTTCTATACCAGCAGAGATGGTGAGTGTTCAAGCAAGCAGTAGT
CCAAGCCAGGCAGTGGTGGCACACATGGTATAAGCCGGACCTGTGGTGGT
GTGCACCTGACTAGGAGGGGATGTTTTGCAGCAGGAAGACACCGTCCGGT
GTGTGTAGTCAGGTTGGCTGTGGCCCCGAGGGCGGACGACAACGATGCTG
TGGCGGCCCAAGATAATGCCGCAATACGTGCCTCCGGGCATGAGCATCAT
CAAGTGATGAGGCAGTTTTGTTGATGAAGGTCAGATGATGTTGTAGCATC
ATATGCTATGGATAATAAAATAGTAATGGTCAAGCTTAATTAGAAGAAGA
GGAGTTTTAGCTAATAAGAAGTGAGGAATAAAAATAGGCCTGGCAATGGT
AGCATCCGAGCATAGTAGATAATAGCGTAGAATAATTAATACAACCATTT
TAACCAAGGAAACCCCAGACAGCCATTATGCCATGCCCCCGCCATGACCG
CGAAAGATCTTCTACTTTAATAGATTGGGACAATTATGTAACCTTGTAGC
AAGATGTAGAGTTACAGAGCAGTAGGCCACAGCAGAACAGGCTAAGGTAA
CCGAGACAACAATAAGAAGACCCTCATGCAGCCATTGTCAGAAGTCTAAA
AATTCTGCTTATAGCACCGGAAAATGACATCATTCTTGCACAGCACAATG
AAAAAAAAATCATAACTAAAAAAATGACAAAAAGTGACAAGCGCCACAAG
ACATGATGCTGGATGACCAGATTTTTCCTTCAAGGAAAATTCAGTGCAAC
AACTCATAGCATGCCTCCATGAGCCCAAGAGTGGCTGCTCAACCAATCTC
ACTTCATGTAGCGCTTGTGGACTCAGGATTACCACAAGTGTGCGCCCCTA
CGATGGCCAAAACATCATTCCGTCATCAGTACCAGTAAATTCAAGGAGTC
AAAAATCTAATAACCAACCAACAAGGCTACTGGTGCTAGCTGATGAAGGC
CGAGCAGCCTGGGGCAGTGCTTGCCATGCCATTGTTAATAACTGATAAAA
AACATCCAAACTCTATGTTCACTACTGTGCACCACCAACATAACCCCCCC
AAAGCTTTATCCATTGTAAAGTATATTAGATTATCAACATTCTTCTTAAC
GGAGGCCGTAGTATGGAGATAGCTGTTTTTTGGTTCTCCATTCGATAACA
AGGGTTTTACCATTTGGTTGGAAGTCGTTCCACCTCGTCGTTGCTACAGT
GGGGCGACTGCTTCGCAATCTCCTACAAGGTGACCCGCTGTGCGAGTCTC
CGAGCGCAGAATTACAGATGTGGGCGTGATTCATCTTTCGGGATGATATT
CATTTCGAGATTGACCTCAAGTCAACCAGAATGTACTGGTCCAACGATCT
CCGTCACTTGAACCCATGTCGGTGCACGGGCATTTGGATGCGATGGTACA
AGTCCATCGCCGTGTGAGTAGGATGTCATCTGGAATGAACTTGGAGGGAG
TGCGAGCACACTGCCAATGCGAAGGATCCGAGTTCCATCCCCATGCTGGA
CAGCAGCCAGTGGGCTGCTCAGATCAGTAGGCCTCCAGCTTGTTGTGGTC
AGCCAATCTATTCTGTGGAAGTGGATGTGAGCAACTGTGACACGGTATGT
GGTGCCTTGGTGAAGGACCACCACTCGACAACGTTAGTGCATGACCTGCA
ACAAGTGGCCAAGATGATGTACATACCTCTCAGCAGGAGGGGAATGTGTT
CCAAATATATTGCTGGAGGTTACACGACAACCTGCGCACAGTGGGGAGGA
GGAGGAGAAGAACTCTCTGCTGCGACTCTGGGGGAGCAGCCAGGGCCAAC
TTCCCACCCCACCCCGGCCCTGCTCCTAGCTGGGCTACCCGGTCCTGCCT
ACGGCCGCGCTGCCTGAGGCCGGGGCCACCCTGGGGTGCCCTTATGGTGG
ACGGATCTACGCTCTGCTGTGCTCTCCACTGTGGGGGAGTTACCACCTGC
ACTAGGTATCTGCTGGTTAGTGCATCTCTCTCATGACTGCACGAAGCCCT
GATCACCCTTCATGTAGACGCACATGGGGGGGCGCGCCCGGCGCCACCTG
GCGCACGCGGGGGCGGAGCTGCCGCCTCACACCACTTGACACTGGTCCTG
CTGGAAATAGATCTGTAAGATGTCCTGGGTTTGTGCCCACGTTCGGGCAG
CGTGGTTTGCCTGGGAGCGAGAGCAGACAGTGCCTTTCACCTCTGGTGTT
GATGTTGTTGGTGTGACCAGACTCCACCTTCTCAGGTTCTGTTCGGTCAG
GGGGAGTGTTAAGCATCATCAGCACACCCGAGGGTAAGAGGGAATGCGGC
CTGGCCGCGATCCTGGTTAATTGTTGAAGTACAGGTTGCCCTGATACCAA
TACGATGAATAAGTCAGTTGTGGTTTTATCATGGGGCTACGGACAGTTAC
AACAAGCTGGAAGACAGTGCTTCCCGTATGCTTAGGAACTGGCCAATAGT
GGTAGCTACAAGTAGTATATGGGTATCAAACAGATGCATGTAGAAAATTA
GTTTCCTCTACACCTATTTTCAATGTTGTACTAATCTGACCTTCTTCACT
CTTCACTCCGTGAAGAAAATCAGCCTTCTAACAAAATTCCCGTTTAGACA
GGTGTTCGCCTGACTGCATGGTACAGGTTAAGAATGTTTGATTCTCAACA
GTATTTATCACCAAGAGACAGTAGTAAGCATCATACCATTTGTATGATTA
CTTGGGTATCTACTGACACTTATATATCATAGTCTGAACAGATAGACATG
TCTTCATTGATTGTGCAATGTTGGCGCCCCCATCATCATGAAGAAGGTGG
AGTAAGATTTTTCATTGCTTAGAAGAAATACCACACTACAGTTTACCAAG
TCATCACTGCAAAAGACTCGAGTTTTGGCCAATACCAGGCCACCACCAGC
TGAGGTTGGTGGCTTTTCGTCAGTTCTGCTGGCATTGGCCACAACTCAAG
TCTTTTGCAGTGATGACTTGGTATTCTGCAACCGTCCTTTTAAAAAATAT
TGGAATCGCGCATTACAGTTTCATGATGTTGTATTTCTTGTGCTATAGCA
GTAGTTTTGGCCTTGGCCTTAAAGCTTTGACAGTGTCCGTGAAAAATTAG
ACAGGGTCAATGTCTTCCTTTTGGAATATCCTATGTCTGATCGATGGTCT
TACTACTAATCACTTGGTACAATGTAGTGTAGTCTTTCTTCTAAACCATA
GAAATTTGTACCCCACCTGCTTCATGATGGTTGGGGCGCCGACATTGCAC
AATCAATGAAGGCATGTCTATCTGCTCAGACATAATAAGTGTCATCAGTA
TAAATATCCAAATAACTATATATAAAAAGAATCTGAACTGCTGAAACTAT
CAAATATTATCACGTGTATCATGTTGACCCCCTGGAGTGACATTATTGCG
TGTAATAGTAAATTATACATACATGTGAAAAATTTGCCAGCAATGCGATG
TATATATCTTAACACCCCCCCAGAATACAGAAAACCCTTCGGAAAAAAAC
TTTTGGGGAGCGATGGTGGGTAAGAAAAGAGGATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:4756643..4764228+

>mRNA_H-akashiwo_Contig8.105.1 ID=mRNA_H-akashiwo_Contig8.105.1|Name=mRNA_H-akashiwo_Contig8.105.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=225bp|location=Sequence derived from alignment at H-akashiwo_Contig8:4756643..4764228+ (Heterosigma akashiwo CCMP452)
GGCGGAGCTGAACGAGATGATGACCTGGCTTCACCGGGCGGTGTTCTCCA
ACCTGCGCGTAGCCTTGCAGAACATCGAGTACGACGCCAACGACGAGGTG
AACTGGCCGACCTTTGCGCGCTTCACCGTTCAGTACCCCTTCGTCATCTT
CCCGGCTTACCGAATACAGAAAACCCTTCGGAAAAAAACTTTTGGGGAGC
GATGGTGGGTAAGAAAAGAGGATGA
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