mRNA_H-akashiwo_Contig128.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig128.11.1
Unique NamemRNA_H-akashiwo_Contig128.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig128.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig128contigH-akashiwo_Contig128:799828..807800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size204
Hectar predicted targeting categoryother localisation
Exons3
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387141.2696228-CDS-H-akashiwo_Contig128:799827..7999321681387141.2696228-CDS-H-akashiwo_Contig128:799827..799932Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig128 799828..799932 +
1681387141.2800858-CDS-H-akashiwo_Contig128:800172..8002401681387141.2800858-CDS-H-akashiwo_Contig128:800172..800240Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig128 800173..800240 +
1681387141.288744-CDS-H-akashiwo_Contig128:807771..8077991681387141.288744-CDS-H-akashiwo_Contig128:807771..807799Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig128 807772..807799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig128.11.1prot_H-akashiwo_Contig128.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig128 799828..807799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig128.11.1

>prot_H-akashiwo_Contig128.11.1 ID=prot_H-akashiwo_Contig128.11.1|Name=mRNA_H-akashiwo_Contig128.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
AIISGNLKEINVFLFSQTLDSKPIQEKDVIEAYRLALSKLEVFQEIVSTL
QRYWQSTRQDPNSLNQL
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mRNA from alignment at H-akashiwo_Contig128:799828..807800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig128.11.1 ID=mRNA_H-akashiwo_Contig128.11.1|Name=mRNA_H-akashiwo_Contig128.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7973bp|location=Sequence derived from alignment at H-akashiwo_Contig128:799828..807800+ (Heterosigma akashiwo CCMP452)
GCTATCATTTCAGGGAATCTGAAGGAAATCAATGTGTTTCTTTTTTCTCA
AACTTTGGATTCAAAGCCAATTCAAGAAAAGGATGTTATTGAGGCGTACA
GATTGGTGGGAAGGAAATTATACATACACAAAACACACACCCAGAGAATT
GTATTGTATTTTCTACAACATATATATATATGTATGACACCAGATTGGAG
TACGGGGATAGTATTCCATATTATGGCGCTAGGGGGGGGGGGGCTCACTT
GGaAAAAGAGCAAAAAAAAAAATTAAGTATGCAATGCATTGACCACCAAC
AAAATTTATCATTAACAACAACGTATATTTATTCTTCATCATCAGGCGTT
GTCAAAGCTTGAGGTATTTCAAGAAATAGTCTCAACTCTGCAAAGATATT
GGCAGTCAACCAGGTGCAATCATTGTAATAGCATTCGACTGGCTGGTGGT
GGCCCACCTTTCCTCTATAATAGCCTGATGCTGTTGCCAGAATTCGGCTA
TGCATACAATGATAGTGAAGCGTGTCGCCATGTAGCGGGGGGTGGCATTA
CTTGTATCATAATAATATGAATATATAAATAAACGTAGAAAATGATGATG
ATTCTAGGTAGATGATGATATCTATAAATGTAACTCAATGAAGGGTGTTT
TGTGGAGGAGGTGTATTAAAGCATATGTTTTTTACTTTTTATTTATTATG
ATTGGTGGTTGTTGTACAGCAAGAGACAGGCAGCTGTTGTTGTGGCTTTC
TCTCTCTCTCTCTCTCTAGAGCCATTGTTGCTCCATAGCTTAACAACATC
ATCTAAAAAAAATACATTGTGCTCGTGATGACCTCTCACTTAGTAATGGC
ACCAGTATGAGGTTTACACCACTACTATAGATAGTATAGTGCTTCTGCAG
CAAGGAGTTGTTGATCTTTGTGTGCACACTGTTACCAGAAACTGTTGGGT
TTTTCACATTGCTTAGCGTAGCTTGCTTCAGGTCATAGATCTCAAAATAC
CGAAAAAGATCCCCGTGTTTTTCAACCTGCTGGCACTGAGGCTCATGAAA
TTATTTTGTTTGTGGCGGTAAATCCATATGGCCACAATACTTTTTTATCT
CTCTGGATCAGTCGGCGTAATAGATTGCTCATCAAGCAGAGGGAAGTTCG
TCCTTGTTTTTTTTTTTGGTGTGCTGATGGTCCTTGCTTGTCGTCTGCAG
TCGTTGGAAGCAGCAGTGCAATACAACAGCGACTACCCTCCCAGAAATGT
CTGTCGTGTTGCTATTGCAGTGCAATGCATCTACTAGCGCTCCCATAGGT
TTTGGCCTGTGTAACCCTAATTGACGCAAGTAGTTCTGGATATTCACAGG
ATGGAAGGGCTTGCAAGAGCGCCGACAGTATCACTCGAGAGTGATCTATC
CTGATGATTGTGTATCAATGGACCAGGACAGCAAACCTGTGAAGGCTGTC
CATTCCCGTAAGCCAGTGTCGATCATTCATGGAAATGTAAATCAATGAAG
AAGAGTGTTTTGTGGAGGTGTGTTGAAGCATGATATATGATGTGTTTTAC
TTTTCATATACAGCAGGAGACAGGCAGCTGTTTTTTCGGCTCGCTCTCTC
TCTTTAGAGCCATCGTCAGTGCCCCATAGCTTTTACATCTAGAAAAGCTA
CAGGGAAGAAAATGACCTCCGGTTGTTTTTGACCCAAAACAATATATCAC
ATTTTTGAAAGAGAATATAAATAAATAAATAAATAAAGAAGAACGCGTCA
CCATCGGGAAAGGGCATACTCGCTCAAAAAGAACGGGGGGTGTTGCAAAC
GGAGCTCTGATTTTTTAACTTCCTCCTCCATTTGCACACACACACACACA
CACCATTCTTATCCGTTAATGTCGAAATGCTCGTATTAAATTACGGTGTT
CGTTTTGGGCGAGAATGGTCTTCCCCTTCAATGACCTGTTCTTCTTCTTT
ATTATATTTATTTATTATATTATTATTATTATTATATTGTTATATCTTTT
ATTTTTATCTTTAACATATGTAGCCTGGTGATAGACAGATGAGGATCTGG
GCTCAGATTGACTCCAAAACGGCGGCTTGGCTCAGGGCGCTGCCTTTAGC
GGAGCACTCGTTTGACCTTGCCGCTGAGTAGTGGCGTGACCGGTTGGCGC
TCCAGGTTGGGTGGCAGCTGAAGGGGTTGCCTGCCAAATGCGATGGCTGT
GGAGAACCTTTCACCATGGACCATGCCCTATTCTGTTTGCTTGGGGGCAA
TGTGAAGGTTAGTCATGACCACCTCCGCGACGCCATGGTTGATGTGTGCA
TGAAGGCATATATGGAAACTGCACTCGAGTGCCAGTTATGAGGGCGGCGT
CTCAGCGGGCCAAGGATGGGGAGAACGATGGCCTCACTGCGGACTGTGCT
GCTAGGGATGTGGGAGCGTAGCCGGATATATTCGCATTGTTGTGCCTGCT
AGTAGTCGTAGTCGTGCTTCTCGCAGCATCTCTTACAGCAGTGTCCTCAA
CAGCCAGAGACGTGGCCGAAGATCAAAAAGTACAAGGTGGCCGCGCGGAG
GAGCTGCGGGCTACCTTCTGCCCCCTCGTCATCACTGTTGGTGGAGTTGC
CCATGCTCCCTTCCAGGCTTTCTTGAGGCGTGTGTCAGCGCAGCTCTCGG
CCAAGTGGCAGCGGCCTTTCTCCTCTGTGACTAACTGGGTGTGGGTGCGG
GTGAAAATGTCCCTGATTAGGGCTGTGAACCTGCGTCTCCGGGGCTCAAG
GCTGAAGCGGTAGAAGAAGAGTATTGCCGTTTTAGAGAAGGAAGATAATA
TTATCCCTTTAAAAAAATGCCATTAAAGAGAAAAACATGTTTTTGAAGAC
CATTATTATCCCACCGAAAGGAGTCATTTTGTCTTAAATTGCAATGCGCT
GTGTTGTTTTTTCAAAAAGGAAAAGCAGCAGCAGAAGCAGCAGCAGCAAA
AAAAGCTGCTGCTATTACAAATTTGGCTGATGCAGTTGTATGGGAAACCA
CACAAAACTGCAGTGGCAAAAGCCACACTAGAGCGGACAATGATTTTGTA
CTATTTTGTTTCAGGGAAAGAGTCATTCATTACACAGAAGCCCATTCCAG
ATTTGCATTGCCAAAATTTGTCACACAAAATAAACTCAAAGTACTTCTGC
TAAAATTCAACACCACCACACGTATAATCCAAAGGTCTTCCAGGCACAGC
AGTGCATCATCACAGAAGCGCTCAAGAGTGAACTCAAAGAAGCCCACAGG
TGCTTAGGACCATTGAAACTCCACAATTTGCCAGAGAAATGCTGAGCACG
TCTACATAGCTGCCGCGATGAGTGTTGGAGTTGAACAGAGGATATCTTTT
CAATAAAGTGTGGTTCTTACCATGAACAAACTACAAACACAAACACAAAA
CAAAATACTCTAACAACATTGCAAACAAAACAACGATAAAAATATCGCTT
ACAAAAAAAAATGTCAATAATGTGAACTGTACTCGCTTTCTTTTTTTTGT
ATACGTTCTACTTGCAATGCAGTCCTTCACATCCTGAACCTCGCATTAAG
TTTGAGGGGGAGCATTGTTCACTAACACAAAAACAAATTTAAAGTACATA
CACATGACAAACAAAAACCTACAAAAAAAATGTCAACAATGCGAACTGTA
CTCGCTTTCGCATTAAGTTTGAGGGGGAGCATTGTTGACTAACACAAAAA
CAAATAAAAAATACATACACATAAACAAACAAAAACCTAAGACATACACA
AAACAAACAAAACCTAAGGAAAATGATACTAAAACAATGTTGTATTAATA
TGTATTATATATTTATAGTGTTGTGCATCATGAAATACGGTGGGAAAAAT
GAAAATGATGGTTTGATAAGAACTAAATAATTTGTTAAATTGTGCATAAT
GAAAAACGATGGTGGAGCAATTGTAACGTTGTGAAGTGCTGTCACTGGAG
TAGGACAGAGAGAGAAATAAACAATGAAATGTTATAAAGTTATGAAAAGA
AGAAAGGTGGAAAGTAGTTGCAACAAAGGAATAATAATATGCCATTCGTT
TGTTGTAAAGCAATGATTGATTGCTTTTAGATTCCCTTTTCAAAATATAT
ATCGTTCGCTTGTTGCACAGCAATGATTGATTTCTTTTAGAATGCCTTTT
CAATATGCATTGCAGAGCAATGATGAATTGCTTCAAGATCACCTTGTTAA
CCTTTTTTTATAGACTTGGTTGGAGATAGTCATATGATGAAGAAAACAGT
ATTAGCAATGGCCTAGTCTGTATTTCAACCTCCTGAAATGAATTCAAATC
TGAGAATATGACCTATCTACTTATACCTTATTGTGTGAGAGATTGAGTTG
AATTTTCTGATGTTTTTGGTATTTTTGACGTGTGTGCGAAACAGTAGGTG
AATGAAGAATGCTTTAATCAGTTGTTATCACAACATGGTACGCCAACAGA
CTGAATTTCGCTTTTATTAGAGCACATCAGCTGACAATAACCGCACGCAC
TAGCTGACGGCTACATCTTCAATTTCTCCTACTATTATAGTAGTTTGCAG
ATGGTTGTGACAGAGGTGGCCCTGGTGAGGGGGCCTCTGTTGCCAACAGC
TGTTGGTGTTGCCGAATGAGGACTATCCTCTGTCCTTACAATGCAATAAT
TGCTGGAAGCCATCATCAACTTAAAGGTTACGGGTGAAATAATTGATGAG
TATTTTTCCTTCTTGCATCCAACTGGTCGAAGCCAGACAAGAATTTCAAA
TTTTCCAAGATCCAAATCTTTTGCATGAAAACGCTGAGCTCGGCATATGT
ACTTTTATTATTTGAGAAAGGTCTCGGATTGATTCGTCTGGCATTTTGAG
GTCATCCAACGTCCTTGCCAAGAACGTAACATCGTGATACGACACGACAC
ATGGGATCATTTGAGCACTCGCGATGAAGCAATCTTTTTGAAAAAACCTG
GTATTATTTGACTGGAGAAACTTGAGAAACTTGAGGTCATTACTGCAACG
CCCATATGGCTGCAAGTTGAAGGTGCGCCAGCGACCTTTGAAAGGTCGCC
GGCAGTGCCCATGTATACATGAGCGGGCGAATGCCTTGACCAAAGTCCGC
GGCATTCAGGGTAAAGGCACGCATAGTAAAGCGAAGCTGCTCGTATATGT
GCGAAGGTTTTATGTGAGAGATTGAGTTCAATTTTTCTGTTGTTTTTGGT
ATTTTTGACAGATGTGCGAAACAGGAGATGAATGAAGAATGCTTTAATCA
GTTATCACAACATGGTATGCCAACAGCCTGACTTTCGCTCTTATTTGAGC
ACATCAGCTGACAATAACCGCACGCACTAGCTGACGGCTACATCTTCAAT
TTCTCCTACTATAGTAGTTCGCAGATGGTTTTGACAGAGGTGGCCCTGAT
GATGGGGCCTCTGTTGCCAACAGCTGTTGGTGTTGCCGAGTGAGGACTAT
CCTCTGTCCTTACAAAATACAATAATTGCTGGATATGCGCAATTGGTGCG
ATGGGTACGGCGTCGAGCTTTGAGGCAAACAATAGCGGGTTCGATCCCTC
GTGATCAACTCCGTGTATGCGCAGGTCTCTGGCACTTGAGCGTATCTTAT
TGGCAATTCGCTTACTCGGGAAAATTTCTGGGGTTCTGCAGAAATTTCTC
GGGGGCACGCAAAAATGGCCTTCGCGATCGCTGTAGATGTCAAGACTTGT
CACGACGTTGAAAACTGAGCACCACCAGTTGTTCGGTAGGCCGGTCTGAG
GAAGTTAACTTCCGCAGGCCGAAAAACGGACTTGGGAGCTACGGTTGTGT
AGCGAGCACAGGGAGATGTAGGCTGGGAGCCGAACTTCCTGGACACACCG
GCATGAAGGGGCAGGCGCCAACCATCGAGATTGAGGGGCCGAGATGCAAG
AGCCATTGCGATGAGGCCTGGAGAGCAGGAACGGAAGATGGTGTCAAACG
GATCAAGGCGGCTTCGAAATGCTGTCCATAAAAGAGACTGGAGGTTCAGC
AATCGTCGGCAATGTCGAAAGATACTCGTTCCGATGAATTTGTCAGAGAT
CATGGCATCAGGCGACATTGGAGTAAGAAGCCTGCCGGGGTGCTGGAGGT
GGCATCGCCTGAACAAACGTAAAAAAAAAAAAAAAACACACACACACACA
TCATCAACTTAAAGGTTACAGGTGAAATATAGTTGATGAGTATTTCTTCC
TTCTTGCATCCACCTGGTCGAAGCCAGACGTGAATTTCAATTTTCCAAGA
TCCAAATCTTTTGCATGAAAACGCTGAGCTCGGCATATATACTTTTATTT
GAGAAAAAGTCTGTGTTTTGCTTTTTGCTTTACTACCTCCAGTCATTCTT
ATATAGCCGGCTTTTGCACGGACTCCAAAAAATGTGCGAAGTGTAAATTT
TGTCCCACATCCAAGATATGGGCCACCCTTGGGGGGGCGGATACCAAAAT
CATCCGCCCAAATCCCGCCCCGAAAATAAAAATTTACGTTTCTAGTAGGT
ATTTTTTTCTGAATCTACACGCGAAACGGCTGCTATAGAAAAGTATCCTT
TATTTTGGGTTCAAGTTGGATATCCCGAAGAAATAGTGCGCGGATGAAAC
CGGTTTCCGGGACCGGTTTCGGGCCATGTTTCATCCGCGCGCTATCTCCA
GGCGTCCAACTCGATCCCAAGATTAAGGATACTTTTCTATAGCTGTTTTG
CTTGTATATATTCAGAAAAAAATAATAGAAACATATTTTTTTTTTCGGGG
TGGGTTTTGGTATCCGCCCCACCCAGGGGTGGCCCGTATCTTGGATGCGG
GACAAAATTTACACTTCTTCGCATTTTTTTTTCGGAATCTTGAAAAAAAA
TGGCTAAAAGAATGTATAATTTATTTTCAGATCCGAGTTGGACGCCTCAC
GCTACGGCCAATCGCCATCCATGTGAAGATAATGACAGAATGCATCATGA
TTATGATGATGTTAATTTTAGTTTCAAGTCTAACCCATCAAATCGCTTTC
GGAGCAGGACCCCTAGCTTCTATATAAGCAGACCCTTCCACCTCAATCTG
TCATTTCGCAATACCACTACTCAAATCAACCTAAGAACACAAATACAAAC
ACTCTCATACCACGATTTTTCCCTGCATCATTGGACCTCTGTTGTAACAC
CATACGTATTACTCCACCTACTACTCCTCCTGCGGCCCCAGCTTGCCCCC
CCTGATTGGTACCCCCATGCAAGAGCCTCCCCATCCCCATCCCCACCCCT
TAGTGCAGCCCCAGCTGACGCTTCCACTCCTGCCAAAGGGCCTCTATCCG
CTCATCTGTCCACTGTCTGTGGGGGTTGTCCTTACACAACGCAAAGAAAA
AGGACTGCCCTTCCTCCAAACTGCAGCCTCCCACGCCCCCCCCCACCGGC
AGCAGATGTGACAGCCCCCCCCCTTGATCATGCACCTGTCGATTGGGTAG
TAGGGGTGCCTAGCAATGCCGCACTCCCCCCAAGCCACCTCAAAGACATA
GAAGCCGCGCTCCCCACTGCCGTACCTGACCTCGGCCGTCAGAGGAGGGC
GCTGCCTGGCGCCACCCAAACCACCCACAGCCCCCGCTGTATTCAATTGT
TGTTAGTTACACAAAAGGGTAATGGAAAATGAAGCGAAACTTGTCTCTTC
TCTTGTACAAGGGAGAAATACAGTGAGAGATTAAACCGAACTAGCTAACG
TCTTCTTTTGCTTATAGGCCTGATGGTGGTCTTATAATAATAATAAATCA
AAAGTGTATTTATTGTAGTAGTATAGTAGTCTTCTTGTTGTCAAATTATT
AACGTGAGGAAAGCAATCTGATGCTACGTTGTGAGAGCTAACAATATACC
AGCACCCACCACCCATCATTGGTTTCTGTTTCTTTTTACTATTTTGTGTA
CCATTGTCTGTATGTACTGTGGTACATGTCTACTACTGCAACAGGCAAGA
TCCAAACTCCCTAAATCAGCTCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig128:799828..807800+

>mRNA_H-akashiwo_Contig128.11.1 ID=mRNA_H-akashiwo_Contig128.11.1|Name=mRNA_H-akashiwo_Contig128.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig128:799828..807800+ (Heterosigma akashiwo CCMP452)
GCTATCATTTCAGGGAATCTGAAGGAAATCAATGTGTTTCTTTTTTCTCA
AACTTTGGATTCAAAGCCAATTCAAGAAAAGGATGTTATTGAGGCGTACA
GATTGGCGTTGTCAAAGCTTGAGGTATTTCAAGAAATAGTCTCAACTCTG
CAAAGATATTGGCAGTCAACCAGGCAAGATCCAAACTCCCTAAATCAGCT
C
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