mRNA_H-akashiwo_Contig1279.3.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK) HSP 1 Score: 200 bits (509), Expect = 2.290e-62 Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 1
Query: 1 YGVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLVI 387
+G++F QTYSPVVNAASLRLLLA SANKGYAVDSLDISTAFLNG + DVYVRQP + DPQHP KVWKLNKALYGL KQSP+ WYMELH+HL S F+RSG+ESCLYI RD G ELMV VYVDDLVI
Sbjct: 2 FGIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGL-KQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG-GNELMVAVYVDDLVI 128
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK) HSP 1 Score: 172 bits (436), Expect = 8.850e-50 Identity = 87/129 (67.44%), Postives = 104/129 (80.62%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGE-LMVVVYVDDLVI 387
GV+F+ TYSPV+ A SLRL+L+ +ANKG+AV++LDISTAFLN DI+GDVYV+QP GF D HP KVWKL KALYGL +QSP+ WY LHE LL Q+F RS YESCLY R++S GE MV VYVDDLV+
Sbjct: 191 GVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGL-RQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVL 318
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK) HSP 1 Score: 172 bits (437), Expect = 9.880e-50 Identity = 88/129 (68.22%), Postives = 104/129 (80.62%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGE-LMVVVYVDDLVI 387
GV+F+ TYSPVV A SLRL+L+ +ANKG+AV++LDISTAFLN DI+GDVYV+QP GF D HP KVWKL KALYGL +QSP+ WY LHE LL Q+F RS YESCLY R++S GE MV VYVDDLV+
Sbjct: 262 GVDFSATYSPVVAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGL-RQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVL 389
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 130 bits (328), Expect = 9.910e-33 Identity = 61/128 (47.66%), Postives = 93/128 (72.66%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLVI 387
GV++T T+SPVV++ASLR +L +A++ + +DI TAFL+G + D+Y++QP G++ P KV KL K+LYGL KQ+PK WY L+ LL Q + R+GY+SC+Y + S+GG+ ++ VYVDD+V+
Sbjct: 561 GVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGL-KQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVL 687
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A699M1N0_TANCI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699M1N0_TANCI) HSP 1 Score: 124 bits (310), Expect = 5.020e-31 Identity = 60/128 (46.88%), Postives = 91/128 (71.09%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVV-VYVDDLV 384
G++F ++++PVV ++R+ LA +A+K V +D+ TAFLNG++ DVYV QP+GF DP +P V+KL KALYGL KQ+P+ WY L LLSQDF + + L+IR++ G +L++V +YVDD++
Sbjct: 275 GIDFEESFAPVVRLEAIRIFLAYAAHKNMVVYQMDVKTAFLNGNLREDVYVSQPNGFVDPDNPNHVYKLKKALYGL-KQAPRAWYDMLSSFLLSQDFYKGSVDPTLFIRKN--GNDLLLVQIYVDDII 399
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: L0P1Q5_PHYED (PH01B035L11.21 protein n=1 Tax=Phyllostachys edulis TaxID=38705 RepID=L0P1Q5_PHYED) HSP 1 Score: 122 bits (306), Expect = 9.470e-30 Identity = 59/127 (46.46%), Postives = 91/127 (71.65%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLV 384
G++F +T++PV ++R+LLA +A+KG+ + +D+ +AFLNG I +VYVRQP GF++P++P V+KL+KALYGL KQ+P+ WY L +LLS F+ + L+IRR S L+V +YVDD++
Sbjct: 1546 GLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIEEEVYVRQPPGFENPKYPNHVFKLSKALYGL-KQAPRAWYERLKSYLLSHGFEMGKVDKTLFIRRHGSDF-LLVQIYVDDII 1670
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A2Z7CWL2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CWL2_9LAMI) HSP 1 Score: 114 bits (284), Expect = 1.230e-29 Identity = 53/128 (41.41%), Postives = 86/128 (67.19%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLVI 387
G+++ TYSPV S+R++LA +A + Y+V +D+ TAFLNGD+ ++Y+ QP GF P KV KL K+LYGL KQ+PK W+ + + ++ F+ + + C+YI+ DS G +++ +YVDD++I
Sbjct: 24 GLDYFDTYSPVTRITSIRVILAIAALRNYSVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQENKVCKLVKSLYGL-KQAPKQWHEKFDKSMIDSGFKVNECDRCVYIK-DSEDGYVILCIYVDDMLI 149
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A699S935_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699S935_TANCI) HSP 1 Score: 115 bits (287), Expect = 1.480e-29 Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLV 384
G++F ++++PV +R+ LA A+K + V +D+ TAFL+G + DVYV QP GF DP HP V+KL KALYGL KQ+PK WY EL + LL F + + L+IRR + L+V VYVDD++
Sbjct: 79 GLDFEESFAPVARMEDIRIFLAYVAHKSFIVFQMDVKTAFLHGSLKEDVYVCQPKGFIDPDHPSHVYKLKKALYGL-KQAPKAWYDELSKFLLQNHFFKGTIDPTLFIRRFHND-ILVVQVYVDDII 203
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A699VRS6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VRS6_TANCI) HSP 1 Score: 112 bits (281), Expect = 2.880e-29 Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLV 384
G+NF + ++P+ ++R+ LA +A+K + V +D+ TAFL+G + DVYV QP GF D HP V+KL KALYGL KQ+P+ WY EL + LL F + + L+IRR L+V VY+DD++
Sbjct: 26 GINFEEFFAPIARMEAIRIFLAYAAHKSFIVFQMDVKTAFLHGSLKEDVYVCQPEGFIDADHPSHVYKLKKALYGL-KQAPRAWYDELSKFLLQNHFIKGTIDLTLFIRRFHDD-ILVVQVYIDDII 150
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A6L2NT48_TANCI (Copia protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NT48_TANCI) HSP 1 Score: 119 bits (299), Expect = 2.950e-29 Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 1
Query: 4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVV-VYVDDLV 384
G++F +++ PVV ++R+ LA + +K V +D+ TAFLNG++ +VYV QP GF DP +P V+KL KALYGL KQ+P+ WY L L+SQDF + + L+IRR+ G +L++V +YVDD++
Sbjct: 208 GIDFEESFDPVVRLEAIRIFLAYAVHKNMVVYKMDVKTAFLNGNLREEVYVSQPDGFVDPYNPNHVYKLKKALYGL-KQAPRAWYDMLSPFLISQDFSKGSMDPTLFIRRN--GNDLLLVQIYVDDII 332 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig1279.3.1 >prot_H-akashiwo_Contig1279.3.1 ID=prot_H-akashiwo_Contig1279.3.1|Name=mRNA_H-akashiwo_Contig1279.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=129bp YGVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVback to top mRNA from alignment at H-akashiwo_Contig1279:186260..186646+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig1279.3.1 ID=mRNA_H-akashiwo_Contig1279.3.1|Name=mRNA_H-akashiwo_Contig1279.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig1279:186260..186646+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig1279:186260..186646+ >mRNA_H-akashiwo_Contig1279.3.1 ID=mRNA_H-akashiwo_Contig1279.3.1|Name=mRNA_H-akashiwo_Contig1279.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig1279:186260..186646+ (Heterosigma akashiwo CCMP452)back to top |