mRNA_H-akashiwo_Contig1279.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1279.3.1
Unique NamemRNA_H-akashiwo_Contig1279.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 200 bits (509), Expect = 2.290e-62
Identity = 101/129 (78.29%), Postives = 110/129 (85.27%), Query Frame = 1
Query:    1 YGVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLVI 387
            +G++F QTYSPVVNAASLRLLLA SANKGYAVDSLDISTAFLNG +  DVYVRQP  + DPQHP KVWKLNKALYGL KQSP+ WYMELH+HL S  F+RSG+ESCLYI RD  G ELMV VYVDDLVI
Sbjct:    2 FGIDFQQTYSPVVNAASLRLLLAISANKGYAVDSLDISTAFLNGAMTDDVYVRQPPSYVDPQHPNKVWKLNKALYGL-KQSPRVWYMELHDHLESLGFKRSGHESCLYIHRDG-GNELMVAVYVDDLVI 128          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y3B6_HETAK (Hypothetical protein (Fragment) n=6 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B6_HETAK)

HSP 1 Score: 172 bits (436), Expect = 8.850e-50
Identity = 87/129 (67.44%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGE-LMVVVYVDDLVI 387
            GV+F+ TYSPV+ A SLRL+L+ +ANKG+AV++LDISTAFLN DI+GDVYV+QP GF D  HP KVWKL KALYGL +QSP+ WY  LHE LL Q+F RS YESCLY R++S  GE  MV VYVDDLV+
Sbjct:  191 GVDFSTTYSPVIAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGL-RQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVL 318          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y3C5_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3C5_HETAK)

HSP 1 Score: 172 bits (437), Expect = 9.880e-50
Identity = 88/129 (68.22%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGE-LMVVVYVDDLVI 387
            GV+F+ TYSPVV A SLRL+L+ +ANKG+AV++LDISTAFLN DI+GDVYV+QP GF D  HP KVWKL KALYGL +QSP+ WY  LHE LL Q+F RS YESCLY R++S  GE  MV VYVDDLV+
Sbjct:  262 GVDFSATYSPVVAAPSLRLMLSIAANKGHAVEALDISTAFLNSDIDGDVYVKQPPGFVDKDHPHKVWKLKKALYGL-RQSPRLWYNTLHEFLLQQNFVRSDYESCLYTRKNSVTGEDTMVAVYVDDLVL 389          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 130 bits (328), Expect = 9.910e-33
Identity = 61/128 (47.66%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLVI 387
            GV++T T+SPVV++ASLR +L  +A++   +  +DI TAFL+G +  D+Y++QP G++ P    KV KL K+LYGL KQ+PK WY  L+  LL Q + R+GY+SC+Y +  S+GG+ ++ VYVDD+V+
Sbjct:  561 GVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMDIKTAFLHGKLEEDIYMKQPEGYEVPGMEHKVLKLKKSLYGL-KQAPKCWYQNLNGFLLQQGYTRNGYDSCVYSKVSSTGGKTLISVYVDDIVL 687          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A699M1N0_TANCI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699M1N0_TANCI)

HSP 1 Score: 124 bits (310), Expect = 5.020e-31
Identity = 60/128 (46.88%), Postives = 91/128 (71.09%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVV-VYVDDLV 384
            G++F ++++PVV   ++R+ LA +A+K   V  +D+ TAFLNG++  DVYV QP+GF DP +P  V+KL KALYGL KQ+P+ WY  L   LLSQDF +   +  L+IR++  G +L++V +YVDD++
Sbjct:  275 GIDFEESFAPVVRLEAIRIFLAYAAHKNMVVYQMDVKTAFLNGNLREDVYVSQPNGFVDPDNPNHVYKLKKALYGL-KQAPRAWYDMLSSFLLSQDFYKGSVDPTLFIRKN--GNDLLLVQIYVDDII 399          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: L0P1Q5_PHYED (PH01B035L11.21 protein n=1 Tax=Phyllostachys edulis TaxID=38705 RepID=L0P1Q5_PHYED)

HSP 1 Score: 122 bits (306), Expect = 9.470e-30
Identity = 59/127 (46.46%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLV 384
            G++F +T++PV    ++R+LLA +A+KG+ +  +D+ +AFLNG I  +VYVRQP GF++P++P  V+KL+KALYGL KQ+P+ WY  L  +LLS  F+    +  L+IRR  S   L+V +YVDD++
Sbjct: 1546 GLDFEETFAPVARLEAIRILLAFAASKGFKLYQMDVKSAFLNGLIEEEVYVRQPPGFENPKYPNHVFKLSKALYGL-KQAPRAWYERLKSYLLSHGFEMGKVDKTLFIRRHGSDF-LLVQIYVDDII 1670          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A2Z7CWL2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CWL2_9LAMI)

HSP 1 Score: 114 bits (284), Expect = 1.230e-29
Identity = 53/128 (41.41%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLVI 387
            G+++  TYSPV    S+R++LA +A + Y+V  +D+ TAFLNGD+  ++Y+ QP GF  P    KV KL K+LYGL KQ+PK W+ +  + ++   F+ +  + C+YI+ DS  G +++ +YVDD++I
Sbjct:   24 GLDYFDTYSPVTRITSIRVILAIAALRNYSVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQENKVCKLVKSLYGL-KQAPKQWHEKFDKSMIDSGFKVNECDRCVYIK-DSEDGYVILCIYVDDMLI 149          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A699S935_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699S935_TANCI)

HSP 1 Score: 115 bits (287), Expect = 1.480e-29
Identity = 59/127 (46.46%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLV 384
            G++F ++++PV     +R+ LA  A+K + V  +D+ TAFL+G +  DVYV QP GF DP HP  V+KL KALYGL KQ+PK WY EL + LL   F +   +  L+IRR  +   L+V VYVDD++
Sbjct:   79 GLDFEESFAPVARMEDIRIFLAYVAHKSFIVFQMDVKTAFLHGSLKEDVYVCQPKGFIDPDHPSHVYKLKKALYGL-KQAPKAWYDELSKFLLQNHFFKGTIDPTLFIRRFHND-ILVVQVYVDDII 203          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A699VRS6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699VRS6_TANCI)

HSP 1 Score: 112 bits (281), Expect = 2.880e-29
Identity = 56/127 (44.09%), Postives = 82/127 (64.57%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVVVYVDDLV 384
            G+NF + ++P+    ++R+ LA +A+K + V  +D+ TAFL+G +  DVYV QP GF D  HP  V+KL KALYGL KQ+P+ WY EL + LL   F +   +  L+IRR      L+V VY+DD++
Sbjct:   26 GINFEEFFAPIARMEAIRIFLAYAAHKSFIVFQMDVKTAFLHGSLKEDVYVCQPEGFIDADHPSHVYKLKKALYGL-KQAPRAWYDELSKFLLQNHFIKGTIDLTLFIRRFHDD-ILVVQVYIDDII 150          
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Match: A0A6L2NT48_TANCI (Copia protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2NT48_TANCI)

HSP 1 Score: 119 bits (299), Expect = 2.950e-29
Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    4 GVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDVYVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQRSGYESCLYIRRDSSGGELMVV-VYVDDLV 384
            G++F +++ PVV   ++R+ LA + +K   V  +D+ TAFLNG++  +VYV QP GF DP +P  V+KL KALYGL KQ+P+ WY  L   L+SQDF +   +  L+IRR+  G +L++V +YVDD++
Sbjct:  208 GIDFEESFDPVVRLEAIRIFLAYAVHKNMVVYKMDVKTAFLNGNLREEVYVSQPDGFVDPYNPNHVYKLKKALYGL-KQAPRAWYDMLSPFLISQDFSKGSMDPTLFIRRN--GNDLLLVQIYVDDII 332          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1279.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y6S2_HETAK2.290e-6278.29Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y3B6_HETAK8.850e-5067.44Hypothetical protein (Fragment) n=6 Tax=Heterosigm... [more]
A0A7S3Y3C5_HETAK9.880e-5068.22Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK9.910e-3347.66Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A699M1N0_TANCI5.020e-3146.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
L0P1Q5_PHYED9.470e-3046.46PH01B035L11.21 protein n=1 Tax=Phyllostachys eduli... [more]
A0A2Z7CWL2_9LAMI1.230e-2941.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A699S935_TANCI1.480e-2946.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A699VRS6_TANCI2.880e-2944.09Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2NT48_TANCI2.950e-2945.31Copia protein n=1 Tax=Tanacetum cinerariifolium Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1279contigH-akashiwo_Contig1279:186260..186646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog36914.XP_001526364.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size387
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.16e-32
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,47E39@766764|Debaryomycetaceae
DescriptionTransposable element
Cds size387
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387141.0369232-CDS-H-akashiwo_Contig1279:186259..1866461681387141.0369232-CDS-H-akashiwo_Contig1279:186259..186646Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1279 186260..186646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1279.3.1prot_H-akashiwo_Contig1279.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1279 186260..186646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1279.3.1

>prot_H-akashiwo_Contig1279.3.1 ID=prot_H-akashiwo_Contig1279.3.1|Name=mRNA_H-akashiwo_Contig1279.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=129bp
YGVNFTQTYSPVVNAASLRLLLATSANKGYAVDSLDISTAFLNGDINGDV
YVRQPHGFKDPQHPGKVWKLNKALYGLNKQSPKPWYMELHEHLLSQDFQR
SGYESCLYIRRDSSGGELMVVVYVDDLVI
back to top

mRNA from alignment at H-akashiwo_Contig1279:186260..186646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1279.3.1 ID=mRNA_H-akashiwo_Contig1279.3.1|Name=mRNA_H-akashiwo_Contig1279.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig1279:186260..186646+ (Heterosigma akashiwo CCMP452)
TATGGTGTTAATTTTACTCAAACCTACAGCCCCGTGGTCAATGCAGCCAG CCTTCGCTTGTTGCTTGCAACCTCTGCCAACAAGGGCTATGCTGTTGACT CCCTCGATATCAGTACTGCGTTTCTTAACGGCGATATCAATGGTGACGTC TATGTTCGTCAGCCTCATGGTTTCAAGGATCCTCAGCACCCTGGCAAAGT CTGGAAGCTTAACAAGGCGCTGTATGGCCTTAATAAGCAAAGCCCAAAAC CGTGGTACATGGAGCTGCATGAGCACCTTCTGTCTCAGGACTTCCAGCGC AGTGGCTACGAATCCTGCTTATATATCCGCCGTGATAGCTCGGGTGGTGA GCTTATGGTTGTTGTTTACGTTGATGATCTCGTAATC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1279:186260..186646+

>mRNA_H-akashiwo_Contig1279.3.1 ID=mRNA_H-akashiwo_Contig1279.3.1|Name=mRNA_H-akashiwo_Contig1279.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=387bp|location=Sequence derived from alignment at H-akashiwo_Contig1279:186260..186646+ (Heterosigma akashiwo CCMP452)
TATGGTGTTAATTTTACTCAAACCTACAGCCCCGTGGTCAATGCAGCCAG
CCTTCGCTTGTTGCTTGCAACCTCTGCCAACAAGGGCTATGCTGTTGACT
CCCTCGATATCAGTACTGCGTTTCTTAACGGCGATATCAATGGTGACGTC
TATGTTCGTCAGCCTCATGGTTTCAAGGATCCTCAGCACCCTGGCAAAGT
CTGGAAGCTTAACAAGGCGCTGTATGGCCTTAATAAGCAAAGCCCAAAAC
CGTGGTACATGGAGCTGCATGAGCACCTTCTGTCTCAGGACTTCCAGCGC
AGTGGCTACGAATCCTGCTTATATATCCGCCGTGATAGCTCGGGTGGTGA
GCTTATGGTTGTTGTTTACGTTGATGATCTCGTAATC
back to top