mRNA_H-akashiwo_Contig1278.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1278.9.1
Unique NamemRNA_H-akashiwo_Contig1278.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A0A7S1CFG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFG3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 6.130e-33
Identity = 57/136 (41.91%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   10 FSNLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            F++LG  C ++ C+Q+DFLPF CDCC+G FCL HRS+  H C K+ + + VA+ CP C++  +    +D N    +H    C      D   A+ KKP+C VKGCR K V  N   C +C Q  C+ HR+ D H C
Sbjct:    3 FAHLGAHCDVKTCRQRDFLPFTCDCCDGTFCLDHRSYRTHECPKAAELDSVAIKCPLCSQAFKLGAGEDANVAWERHSRDGCDP----DGRKARVKKPRCDVKGCREKLVFSNRYDCTSCGQAVCLQHRFADAHKC 134          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: D7FYN8_ECTSI (AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN8_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.740e-31
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 MAFFSNLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNCG 420
            M  F+ +GK C  ++C QQDFLPF CDCCNG FCL+HRS+  H C  S +++  A+ CP C KT+R    QD N     H  + C     +D   AK+ K +C    CR      N QRC +C + TC+ HR+ D+HNC 
Sbjct:    1 MPEFTGVGKHCGAENCNQQDFLPFECDCCNGTFCLSHRSYAAHSCAASGNKDFRALVCPLCKKTVRFNGGQDPNQQWDLHTRTDCNP---EDYKRAKQTKKRCAAASCRVVLGPTNTQRCASCGKETCLTHRFPDSHNCS 137          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: I0YR52_COCSC (AN1-type domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YR52_COCSC)

HSP 1 Score: 118 bits (296), Expect = 4.360e-31
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1
Query:   16 NLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNCGFR 426
            +LG  C   DCQQ DFLPF+CD C  +FCLAHR +  H C+++ +R    + CP CAK ++ L  QD NA   +H   AC   +         KKPKC V  C+ K  SVN   C TC    C+ HR+++ H+C  R
Sbjct:    2 SLGDHCEEPDCQQIDFLPFKCDACQKVFCLAHRKYAAHSCQRAGERETATIICPLCAKAIKLLPDQDANAAFERHTQEACDPMNYTKVH----KKPKCPVPNCKEKLNSVNTYSCKTCGTSVCLKHRFQNDHDCASR 134          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A8IZN9_CHLRE (Predicted protein (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IZN9_CHLRE)

HSP 1 Score: 119 bits (297), Expect = 4.610e-30
Identity = 57/135 (42.22%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   16 NLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNCG 420
            ++G+ CS+  C Q DFLPF+CDCCN IFCL HRS+  H C  S  +    + CP CAK++R    QD NA+  QH  + C   + D       KKP+C V GC+ K  ++N  RC  C Q  C+ HR    H C 
Sbjct:   14 SIGEHCSVSHCGQVDFLPFKCDCCNRIFCLEHRSYAAHACPNSGSKETTVIVCPICAKSVRMTSGQDPNALFEQHTRTDCDPANYDRVH----KKPRCPVAGCKTKLTTINRYRCKHCSQAICLKHRDPADHRCA 144          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A0A699Z4Y8_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699Z4Y8_HAELA)

HSP 1 Score: 116 bits (290), Expect = 9.070e-30
Identity = 52/133 (39.10%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   19 LGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            +G+ CS+ DC Q+DFLPF+CDCC+ +FCL HR++++H C+K+ ++    + CP CAK++R L  +D N    +H  S C  ++ +       KKP+C V GC+ K  ++N   C  C+Q  C+ HR+   H C
Sbjct:    8 IGEHCSVPDCGQRDFLPFKCDCCSRVFCLQHRTYSNHACEKAGEKQLELIVCPLCAKSVR-LNGRDANIAFEEHTKSGCDPQNYNKVH----KKPRCPVHGCKEKLATINTYHCKLCQQRVCIKHRHACDHGC 135          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A0A8J9WKI0_9CHLO (Zinc finger AN1 and C2H2 domain-containing stress-stress-associated protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKI0_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 2.940e-28
Identity = 56/135 (41.48%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   16 NLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAK-KKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            +LG  C +++C+Q DFLPF+CD C  +FCLAHR ++ H CKK+ ++    + CP CAK ++ L  QD NA   +H   AC     D    AK  KK +C V  C+ K  SVN   C TC    C+ HR+   H+C
Sbjct:    2 SLGDHCEVEECKQIDFLPFKCDACEKVFCLAHRKYSAHSCKKAGEKETQTIICPLCAKAIKLLPDQDANAAFERHSQEAC-----DPMNYAKVHKKARCPVPNCKEKLGSVNTYSCKTCGTSVCLRHRFPGDHDC 131          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A0A835W535_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W535_CHLIN)

HSP 1 Score: 116 bits (290), Expect = 7.280e-28
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   16 NLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            ++G+ CS+  C Q DFLPF+CDCCN I+CL HRS+  H C  S  +    + CP CAK++R    QD NA+  QH  + C   + D       KKP+C V GC+ K  ++N  RC  C Q  C+ HR    H C
Sbjct:   13 SIGEHCSVGHCGQVDFLPFKCDCCNRIYCLEHRSYAAHACPNSGSKETTVIVCPICAKSVRMTAGQDPNALFEQHARTDCDPTNYDRVH----KKPRCPVAGCKTKLTTINRYRCKHCSQAICLKHRDPADHRC 142          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A0A836BBP4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBP4_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 9.250e-28
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   16 NLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            ++G+ CS+  C Q DFLPF+CDCCN +FCL HRS+  H C  S  +    + CP CAK++R     D NA+  QH  + C   + D       KKP+C V GC+ K  ++N  RC  C Q  C+ HR    H C
Sbjct:   13 SIGEHCSVSHCGQVDFLPFKCDCCNRVFCLEHRSYAAHACPSSGSKESTVIVCPICAKSVRMTPGTDPNALFEQHTRTDCDPANYDRVH----KKPRCPVAGCKTKLTTINRYRCKHCNQAICLKHRDPADHRC 142          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: D8U802_VOLCA (Uncharacterized protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U802_VOLCA)

HSP 1 Score: 111 bits (277), Expect = 2.460e-27
Identity = 54/133 (40.60%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   19 LGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            +G  CS++DC Q DFLPF+CDCCN  FCL HRS+  H C  +  +    + CP CAK +R    QD +     HQ + C   + D       KKP+C V GC+ K  ++N  RC  C Q  C+ HR    H C
Sbjct:    2 IGDHCSVEDCGQIDFLPFKCDCCNRTFCLEHRSYVAHSCPNAGAKETTVIVCPICAKGMRLKPGQDPSEAFDVHQRTDCDPANYDRVH----KKPRCPVSGCKEKLTTINAYRCKHCSQRVCLRHRDPGDHKC 130          
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Match: A0A397FDG4_9STRA (AN1-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FDG4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.080e-27
Identity = 53/135 (39.26%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   16 NLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSEDRNCVAVSCPQCAKTLRCLQSQDTNAVLAQH-QASACTTRSRDDATSAKKKKPKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNC 417
            +LG+ CS   C Q DFLPF CDCC G+FCL HR++  H C  +  ++  A++CP C  T+     QD N +  QH +A  C   S +D    KK K +C  + CR    + N  +C TCR+  C+ HR++  H C
Sbjct:    4 DLGEHCSKPGCHQNDFLPFACDCCAGVFCLEHRTYDAHSCPNAGRKDSRAITCPLCRATIPLTNDQDVNVIFEQHTRAGNCNPESYNDR---KKAKARCEAENCREILTASNTMQCPTCRKKVCLRHRFETDHQC 135          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1278.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1CFG3_9STRA6.130e-3341.91Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
D7FYN8_ECTSI1.740e-3142.86AN1 and C2H2 zinc finger protein n=2 Tax=Ectocarpu... [more]
I0YR52_COCSC4.360e-3141.61AN1-type domain-containing protein n=1 Tax=Coccomy... [more]
A8IZN9_CHLRE4.610e-3042.22Predicted protein (Fragment) n=1 Tax=Chlamydomonas... [more]
A0A699Z4Y8_HAELA9.070e-3039.10Uncharacterized protein (Fragment) n=1 Tax=Haemato... [more]
A0A8J9WKI0_9CHLO2.940e-2841.48Zinc finger AN1 and C2H2 domain-containing stress-... [more]
A0A835W535_CHLIN7.280e-2841.79Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A836BBP4_9CHLO9.250e-2841.04Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
D8U802_VOLCA2.460e-2740.60Uncharacterized protein (Fragment) n=1 Tax=Volvox ... [more]
A0A397FDG4_9STRA4.080e-2739.26AN1-type domain-containing protein n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1278contigH-akashiwo_Contig1278:260341..260766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FYN8
PFAMszf-AN1,zf-C2H2_4
Model size426
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010200,GO:0010243,GO:0033993,GO:0042221,GO:0042493,GO:0050896,GO:0097305,GO:1901698,GO:1901700
Exons1
Evalue2.86e-32
EggNOG OGsKOG3183@1|root,KOG3183@2759|Eukaryota
Ec32 ortholog descriptionAN1-type zinc finger protein
Ec32 orthologEc-01_008420.1
Descriptionzinc ion binding
Cds size426
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387140.9249897-CDS-H-akashiwo_Contig1278:260340..2607661681387140.9249897-CDS-H-akashiwo_Contig1278:260340..260766Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1278 260341..260766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1278.9.1prot_H-akashiwo_Contig1278.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1278 260341..260766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1278.9.1

>prot_H-akashiwo_Contig1278.9.1 ID=prot_H-akashiwo_Contig1278.9.1|Name=mRNA_H-akashiwo_Contig1278.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=142bp
MAFFSNLGKQCSLQDCQQQDFLPFRCDCCNGIFCLAHRSHTDHHCKKSED
RNCVAVSCPQCAKTLRCLQSQDTNAVLAQHQASACTTRSRDDATSAKKKK
PKCCVKGCRAKRVSVNMQRCLTCRQMTCMNHRYKDTHNCGFR
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mRNA from alignment at H-akashiwo_Contig1278:260341..260766-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1278.9.1 ID=mRNA_H-akashiwo_Contig1278.9.1|Name=mRNA_H-akashiwo_Contig1278.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=426bp|location=Sequence derived from alignment at H-akashiwo_Contig1278:260341..260766- (Heterosigma akashiwo CCMP452)
ATGGCTTTCTTCAGTAATCTAGGCAAACAGTGCTCGCTACAGGACTGTCA GCAGCAGGACTTCCTGCCTTTCCGGTGCGACTGTTGCAATGGCATCTTCT GCCTGGCTCATCGGTCACATACAGATCACCATTGCAAGAAGTCTGAAGAC AGAAACTGTGTCGCGGTGAGTTGCCCACAGTGCGCCAAAACCCTACGCTG CTTGCAAAGCCAGGACACTAATGCTGTTTTGGCCCAGCACCAAGCCTCAG CCTGTACTACCAGAAGTCGGGACGATGCCACTTCTGCGAAGAAGAAAAAG CCCAAGTGCTGCGTGAAAGGATGCAGGGCAAAAAGAGTCTCCGTCAACAT GCAACGGTGTTTGACTTGTCGCCAGATGACTTGTATGAACCACCGTTACA AGGACACGCACAACTGTGGCTTTAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1278:260341..260766-

>mRNA_H-akashiwo_Contig1278.9.1 ID=mRNA_H-akashiwo_Contig1278.9.1|Name=mRNA_H-akashiwo_Contig1278.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=426bp|location=Sequence derived from alignment at H-akashiwo_Contig1278:260341..260766- (Heterosigma akashiwo CCMP452)
ATGGCTTTCTTCAGTAATCTAGGCAAACAGTGCTCGCTACAGGACTGTCA
GCAGCAGGACTTCCTGCCTTTCCGGTGCGACTGTTGCAATGGCATCTTCT
GCCTGGCTCATCGGTCACATACAGATCACCATTGCAAGAAGTCTGAAGAC
AGAAACTGTGTCGCGGTGAGTTGCCCACAGTGCGCCAAAACCCTACGCTG
CTTGCAAAGCCAGGACACTAATGCTGTTTTGGCCCAGCACCAAGCCTCAG
CCTGTACTACCAGAAGTCGGGACGATGCCACTTCTGCGAAGAAGAAAAAG
CCCAAGTGCTGCGTGAAAGGATGCAGGGCAAAAAGAGTCTCCGTCAACAT
GCAACGGTGTTTGACTTGTCGCCAGATGACTTGTATGAACCACCGTTACA
AGGACACGCACAACTGTGGCTTTAGA
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