mRNA_H-akashiwo_Contig1278.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1278.7.1
Unique NamemRNA_H-akashiwo_Contig1278.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 258 bits (659), Expect = 3.720e-78
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 1
Query:    1 DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLR 390
            DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTL KRFTSPS NCLAASYHLLRYLWWTEDKGVTLGGPL LTAYADADFCSERHKGRSRSG+AIFLG SPIIWSS+MQ+CVTRNTTEAEY+SLR
Sbjct:  769 DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLR 898          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 121 bits (304), Expect = 1.190e-30
Identity = 55/121 (45.45%), Postives = 83/121 (68.60%), Query Frame = 1
Query:   28 EAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLGGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLR 390
            +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L A++D+DFC++R  G+S +GY +FLG +PI+WSSK+Q  VT +T EAEY++LR
Sbjct:  131 DANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALR 251          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: UPI000CE1CC1A (uncharacterized protein LOC111994134 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE1CC1A)

HSP 1 Score: 93.6 bits (231), Expect = 5.150e-20
Identity = 51/134 (38.06%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    7 SRRLSTFEAK------KFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISL 387
            S RL+ F+        ++RS+VG + +L  +T P++A+S+H LC+   +P+ + L A+  +LRY+  T   G+     PL L+A++DAD+  +    +S +G  +FLGSSPI WSSK Q+ ++R++TE EY +L
Sbjct:   99 SVRLTPFDGSALSDPTEYRSMVGALQYLT-FTRPDLAFSVHQLCQFMQNPTTSHLEAAKRVLRYVKGTLHFGIHFAPSPLSLSAFSDADWAGDPTNRKSTTGMLVFLGSSPISWSSKKQSTISRSSTETEYRAL 231          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9GA49_FAGSY (Apple domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GA49_FAGSY)

HSP 1 Score: 94.7 bits (234), Expect = 5.360e-20
Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
            RLS  + +K      +RSLVG +++L  +T P++++++H +C+   SP+   L A+  +LRYL  T   G++   GPL+L+A+ DAD+  +    RS SG  ++LG +PI WS+K Q  V+R++TE+EY +L L
Sbjct:  355 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEYRALAL 487          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9HVC4_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HVC4_FAGSY)

HSP 1 Score: 94.7 bits (234), Expect = 5.670e-20
Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
            RLS  + +K      +RSLVG +++L  +T P++++++H +C+   SP+   L A+  +LRYL  T   G++   GPL+L+A+ DAD+  +    RS SG  ++LG +PI WS+K Q  V+R++TE+EY +L L
Sbjct: 1224 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEYRALAL 1356          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9F8M1_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F8M1_FAGSY)

HSP 1 Score: 94.7 bits (234), Expect = 5.670e-20
Identity = 52/134 (38.81%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
            RLS  + +K      +RSLVG +++L  +T P++++++H +C+   SP+   L A+  +LRYL  T   G++   GPL+L+A+ DAD+  +    RS SG  ++LG +PI WS+K Q  V+R++TE+EY +L L
Sbjct: 1237 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEYRALAL 1369          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A5N5FE81_9ROSA (Uncharacterized protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FE81_9ROSA)

HSP 1 Score: 93.6 bits (231), Expect = 8.090e-20
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   40 FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISL 387
            +RSLVG + +L  +T P++A+S+H +C+   +P  +   A   +LRYL  T   G++   G L+L A++DAD+  + +  RS +G  +FLG+SPI WSSK Q  V+R++TEAEY +L
Sbjct:  197 YRSLVGALQYLT-FTRPDIAFSVHQVCQFMQNPMVSHFTAVKRILRYLKGTMQFGISYTKGDLQLKAFSDADWAGDPNDRRSTTGLVVFLGNSPISWSSKKQQTVSRSSTEAEYRAL 312          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: C6JS24_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JS24_SORBI)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-19
Identity = 50/122 (40.98%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   19 STFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTL--GGPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEY 378
            S  +   +RSL G + +L  +T P++AY++  +C     P ++ L A+  +LRYL  T D G+ +    P +LT Y DAD+       RS SGYA+FLGSS + WSSK Q  V+R++ EAEY
Sbjct:  528 SVTDPTAYRSLAGALQYLT-FTRPDIAYAVQQICLHMHDPRESHLTAAKRILRYLKGTLDYGLVIPRSSPSQLTVYTDADWAGCPDTRRSTSGYAVFLGSSLVSWSSKRQPTVSRSSAEAEY 648          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A2N9GTX6_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GTX6_FAGSY)

HSP 1 Score: 93.2 bits (230), Expect = 1.870e-19
Identity = 51/134 (38.06%), Postives = 86/134 (64.18%), Query Frame = 1
Query:   13 RLSTFEAKK------FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLG-GPLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAEYISLRL 393
            RLS  + +K      +RSLVG +++L  +T P++++++H +C+   SP+   L A+  +LRYL  T   G++   GPL+L+A+ DAD+  +    RS SG  ++LG +PI WS+K Q  V+R++TE+E+ +L L
Sbjct:  542 RLSLHDGEKLQDPHAYRSLVGALHYLT-FTRPDLSFAVHQVCQYMASPTSIHLTAAKRILRYLKGTLHLGLSFRPGPLKLSAFTDADWAGDPDDRRSTSGLLVYLGPNPITWSAKKQLTVSRSSTESEFRALAL 674          
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Match: A0A507DAM3_9FUNG (DNA-directed DNA polymerase n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DAM3_9FUNG)

HSP 1 Score: 93.2 bits (230), Expect = 1.890e-19
Identity = 49/115 (42.61%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   40 FRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNCLAASYHLLRYLWWTEDKGVTLGG---PLRLTAYADADFCSERHKGRSRSGYAIFLGSSPIIWSSKMQNCVTRNTTEAE 375
            +RS+VG++ + +  T P++A  +    +    P++  L A   +LRYL  T+D G+ LGG   PL L+A+ DAD+ ++    RSRSG  +FLG+SPIIWSS+ Q+C   +TTEAE
Sbjct:  756 YRSMVGSLLYASNMTRPDIATPVALAGQYVVDPAERHLVAVKKILRYLAGTKDHGLVLGGRTAPLELSAFVDADYNNDVDDRRSRSGVLVFLGNSPIIWSSRKQHCNVISTTEAE 870          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1278.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y1P1_HETAK3.720e-7893.85Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD78_HETAK1.190e-3045.45Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
UPI000CE1CC1A5.150e-2038.06uncharacterized protein LOC111994134 n=1 Tax=Querc... [more]
A0A2N9GA49_FAGSY5.360e-2038.81Apple domain-containing protein n=1 Tax=Fagus sylv... [more]
A0A2N9HVC4_FAGSY5.670e-2038.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9F8M1_FAGSY5.670e-2038.81Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A5N5FE81_9ROSA8.090e-2041.88Uncharacterized protein n=1 Tax=Pyrus ussuriensis ... [more]
C6JS24_SORBI1.860e-1940.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GTX6_FAGSY1.870e-1938.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A507DAM3_9FUNG1.890e-1942.61DNA-directed DNA polymerase n=1 Tax=Synchytrium en... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1278contigH-akashiwo_Contig1278:258533..258934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4558.Sb0019s003280.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs
Model size402
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.05e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YXJ@33090|Viridiplantae,3GHMT@35493|Streptophyta,3MAH5@4447|Liliopsida
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size402
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387140.8909426-CDS-H-akashiwo_Contig1278:258532..2589341681387140.8909426-CDS-H-akashiwo_Contig1278:258532..258934Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1278 258533..258934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1278.7.1prot_H-akashiwo_Contig1278.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1278 258533..258934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1278.7.1

>prot_H-akashiwo_Contig1278.7.1 ID=prot_H-akashiwo_Contig1278.7.1|Name=mRNA_H-akashiwo_Contig1278.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=134bp
DTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLCKRFTSPSDNC
LAASYHLLRYLWWTEDKGVTLGGPLRLTAYADADFCSERHKGRSRSGYAI
FLGSSPIIWSSKMQNCVTRNTTEAEYISLRLPM*
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mRNA from alignment at H-akashiwo_Contig1278:258533..258934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1278.7.1 ID=mRNA_H-akashiwo_Contig1278.7.1|Name=mRNA_H-akashiwo_Contig1278.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=402bp|location=Sequence derived from alignment at H-akashiwo_Contig1278:258533..258934+ (Heterosigma akashiwo CCMP452)
GACACTTCCAGGAGGCTTAGCACTTTTGAAGCAAAGAAATTCAGATCCTT GGTTGGTACAGTCAACTGGTTAGCTCTCTGGACCTTCCCGGAAGTGGCCT ACTCAATACACACACTATGCAAGAGGTTTACTTCACCATCTGATAACTGC TTGGCTGCTTCTTATCATCTCCTAAGATACCTTTGGTGGACAGAGGACAA GGGTGTTACTCTAGGTGGCCCTCTCAGACTGACTGCATATGCAGATGCTG ATTTCTGCAGTGAAAGACACAAAGGAAGAAGCAGGTCTGGTTATGCTATC TTCTTGGGATCCTCTCCTATCATATGGTCGTCCAAGATGCAAAATTGTGT CACAAGAAATACAACTGAGGCTGAATATATAAGCCTCAGATTACCGATGT AA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1278:258533..258934+

>mRNA_H-akashiwo_Contig1278.7.1 ID=mRNA_H-akashiwo_Contig1278.7.1|Name=mRNA_H-akashiwo_Contig1278.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=402bp|location=Sequence derived from alignment at H-akashiwo_Contig1278:258533..258934+ (Heterosigma akashiwo CCMP452)
GACACTTCCAGGAGGCTTAGCACTTTTGAAGCAAAGAAATTCAGATCCTT
GGTTGGTACAGTCAACTGGTTAGCTCTCTGGACCTTCCCGGAAGTGGCCT
ACTCAATACACACACTATGCAAGAGGTTTACTTCACCATCTGATAACTGC
TTGGCTGCTTCTTATCATCTCCTAAGATACCTTTGGTGGACAGAGGACAA
GGGTGTTACTCTAGGTGGCCCTCTCAGACTGACTGCATATGCAGATGCTG
ATTTCTGCAGTGAAAGACACAAAGGAAGAAGCAGGTCTGGTTATGCTATC
TTCTTGGGATCCTCTCCTATCATATGGTCGTCCAAGATGCAAAATTGTGT
CACAAGAAATACAACTGAGGCTGAATATATAAGCCTCAGATTACCGATGT
AA
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