mRNA_H-akashiwo_Contig1263.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1263.2.1
Unique NamemRNA_H-akashiwo_Contig1263.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1263.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1263contigH-akashiwo_Contig1263:77511..78098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size452
Hectar predicted targeting categoryother localisation
Exons2
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387137.391658-UTR-H-akashiwo_Contig1263:77510..777071681387137.391658-UTR-H-akashiwo_Contig1263:77510..77707Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1263 77511..77707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387137.402007-CDS-H-akashiwo_Contig1263:77707..778481681387137.402007-CDS-H-akashiwo_Contig1263:77707..77848Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1263 77708..77848 +
1681387137.412279-CDS-H-akashiwo_Contig1263:77984..780981681387137.412279-CDS-H-akashiwo_Contig1263:77984..78098Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1263 77985..78098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1263.2.1prot_H-akashiwo_Contig1263.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1263 77708..78098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1263.2.1

>prot_H-akashiwo_Contig1263.2.1 ID=prot_H-akashiwo_Contig1263.2.1|Name=mRNA_H-akashiwo_Contig1263.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=85bp
MDFIRAIAGQCFQSDCGLDCLPPLDAETDSKTERPDDFYLSMPEPEELGE
GFASPHSSEEECHSPGCYYSESFRLSTIKEESARR
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mRNA from alignment at H-akashiwo_Contig1263:77511..78098+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1263.2.1 ID=mRNA_H-akashiwo_Contig1263.2.1|Name=mRNA_H-akashiwo_Contig1263.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=588bp|location=Sequence derived from alignment at H-akashiwo_Contig1263:77511..78098+ (Heterosigma akashiwo CCMP452)
AGAAGGCACAGATCGCAGCTACATTTGGGCTGCTCGACCTCGGAAAGGCG
ACGGTGGTGAATCCCTTCCCTGTTATCTCCTCCGGAAGAAGAAGGCGTGG
CGGCTTATAATCGATCCCTGCAGAAAACCATTCGACCTTGTTGACAAGAC
TTAATCTCCTTTCGTCATCGCATGGTCAAAGATAAATCATCATTGCCATG
GATTTTATTCGAGCTATCGCTGGCCAGTGTTTCCAATCAGACTGCGGGCT
TGACTGTTTGCCACCTCTAGATGCCGAAACCGACTCCAAGACTGAACGCC
CAGACGATTTTTATCTTTCAATGCCCGAGCCCGAAGAGGTAATAGATTTG
ATGGTGAAGAAGAAATTAAATTAACAACAACCGCATAAAATTTTAAATTT
TAAAAAAGGAATGCACCAGAAAAGTCTTGCATAATACCTGACCTAAACAC
CGTCCCTTCCTGTTTGCAAAGCAGTTGGGGGAAGGTTTTGCTTCACCACA
TTCTTCAGAAGAGGAATGCCATAGTCCTGGTTGTTATTACTCAGAAAGTT
TTCGCCTGAGCACTATTAAGGAAGAGTCAGCCAGGAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1263:77511..78098+

>mRNA_H-akashiwo_Contig1263.2.1 ID=mRNA_H-akashiwo_Contig1263.2.1|Name=mRNA_H-akashiwo_Contig1263.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=255bp|location=Sequence derived from alignment at H-akashiwo_Contig1263:77511..78098+ (Heterosigma akashiwo CCMP452)
ATGGATTTTATTCGAGCTATCGCTGGCCAGTGTTTCCAATCAGACTGCGG
GCTTGACTGTTTGCCACCTCTAGATGCCGAAACCGACTCCAAGACTGAAC
GCCCAGACGATTTTTATCTTTCAATGCCCGAGCCCGAAGAGTTGGGGGAA
GGTTTTGCTTCACCACATTCTTCAGAAGAGGAATGCCATAGTCCTGGTTG
TTATTACTCAGAAAGTTTTCGCCTGAGCACTATTAAGGAAGAGTCAGCCA
GGAGG
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