mRNA_H-akashiwo_Contig1262.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1262.3.1
Unique NamemRNA_H-akashiwo_Contig1262.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: A0A6V1V4J2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V4J2_HETAK)

HSP 1 Score: 204 bits (518), Expect = 1.010e-62
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1
Query:   16 DGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            DGRIFTQSDGTPIGKSISGPIAG+YLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL
Sbjct:  195 DGRIFTQSDGTPIGKSISGPIAGIYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 289          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: A0A7S3XWS7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWS7_HETAK)

HSP 1 Score: 139 bits (350), Expect = 1.060e-40
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1
Query:   19 GRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTME 264
            GRIF+Q  GTPIGKSISGPIAG+YLNWF+E+FIYS+RCK+KPTLW RMR     IWDHGEEKLQELL HVN QE+R+QFT+E
Sbjct:   42 GRIFSQPGGTPIGKSISGPIAGIYLNWFDEEFIYSERCKNKPTLWKRMRG----IWDHGEEKLQELLGHVNEQEERVQFTIE 119          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: UPI001ED8AC49 (uncharacterized protein LOC124171241 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8AC49)

HSP 1 Score: 92.0 bits (227), Expect = 3.280e-21
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 1
Query:    4 IYCFDGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            ++ ++G  + Q+DG  +G  +S  +A +++  FE + I  +  + KP LW+R  +D F++W HG E+L + L H+N Q  RIQFTME+E++G LAFLD+
Sbjct:   34 VFLWNGSFYEQTDGAAMGSPLSPVMANLFMEDFEAKAI--ETYQKKPKLWLRYVNDTFVVWPHGAEELDKSLCHLNQQHPRIQFTMEKEEDGKLAFLDV 130          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: UPI001ED86C83 (uncharacterized protein LOC124171266 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86C83)

HSP 1 Score: 89.0 bits (219), Expect = 1.600e-18
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    4 IYCFDGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            I+ ++G  + QSDG  +G  +S  +A +++  FE + I  +    KP  W+R  DD FIIW HG E+L   L+H+N   + I+FTME+E++G L FLD+
Sbjct:  515 IFLWNGDFYDQSDGAAMGSPLSPVVANLFMERFEAEAI--NTYDKKPKKWLRYVDDTFIIWPHGTEELDRFLNHLNSWHQNIRFTMEKERDGKLPFLDV 611          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: A0A8B7Y354_ACAPL (uncharacterized protein LOC110977630 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7Y354_ACAPL)

HSP 1 Score: 88.6 bits (218), Expect = 1.750e-18
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   10 CFDGR--IFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            CF  R   F QS GT +G  +S  +A +++  FE+  ++S     KP++W+R  DD F+IW H  + LQ  L H+N Q   IQFTME+E+ G +AFLD+
Sbjct:  114 CFQWRDKFFEQSSGTSMGSPLSPVLADLFMEEFEQTALFS--ADLKPSVWIRYVDDTFVIWPHSPQDLQLFLQHLNSQHNDIQFTMEKEQVGRIAFLDV 210          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: A0A8B8A4D7_ACAPL (uncharacterized protein LOC110990212 n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B8A4D7_ACAPL)

HSP 1 Score: 84.3 bits (207), Expect = 3.360e-18
Identity = 39/97 (40.21%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   10 CFDGR--IFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFL 294
            CF  R   F QS GT +G  +S  +A +++  FE+        + +P +W+R  DD F++W H  + LQ  L H+N Q   IQFTME+EK+G +AFL
Sbjct:    3 CFQWRDKFFEQSSGTSMGSPLSPVLADLFMEEFEQTAHLLCGPQLEPNVWIRYVDDTFVVWPHSPQDLQLFLQHLNSQHNNIQFTMEKEKDGRIAFL 99          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: UPI001E2757EA (uncharacterized protein LOC123675351 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2757EA)

HSP 1 Score: 86.7 bits (213), Expect = 4.560e-18
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 1
Query:    7 YCFDGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            + F    + Q  G P+G  +S  IA +Y++ FE   I S   K  PT W+R  DDVF+IW HG E LQ+   H+N     I+FTME E N  L FLD+
Sbjct:    6 FLFQDTFYKQVKGAPMGSPLSPAIANIYMDDFETNAIESFHLK--PTCWLRYVDDVFVIWPHGPETLQDFFDHLNNINSHIKFTMEVETNNSLPFLDI 101          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: UPI00096B5B4C (uncharacterized protein LOC109598606 n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B5B4C)

HSP 1 Score: 82.4 bits (202), Expect = 6.550e-18
Identity = 36/83 (43.37%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   52 IGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            +G  +S   A  ++  FE++ I  +  KHKP++W R  DD F+IW HG+EKL + L H+N Q   I+FTME EK   + FLD+
Sbjct:    1 MGSLLSSVFANFFMEKFEQKAI--ETSKHKPSVWYRYVDDTFVIWKHGQEKLDQFLKHLNSQHNIIEFTMELEKENQIPFLDV 81          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: UPI000C1FEA71 (uncharacterized protein LOC111420560 n=2 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C1FEA71)

HSP 1 Score: 84.0 bits (206), Expect = 6.840e-18
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    7 YCFDGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            + + G ++ Q +G  +G  +S  IA  Y+  FEE  +   + + KP LW++  DD F+IW HG+++LQE L H+N Q   I+FTME      L FLD+
Sbjct:   91 FSWKGELYEQFEGVAMGSPLSPVIANFYMELFEE--VALKKSQWKPKLWLQYVDDTFVIWQHGQKRLQEFLDHLNSQHPMIKFTMETVTAKKLPFLDV 186          
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Match: UPI001ED86716 (uncharacterized protein LOC124172478 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86716)

HSP 1 Score: 86.7 bits (213), Expect = 1.040e-17
Identity = 40/98 (40.82%), Postives = 59/98 (60.20%), Query Frame = 1
Query:    7 YCFDGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTLWVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL 300
            + FDG+ + Q++G  +G  +S  IA  Y+  FE+Q + S     KP  + R  DD F+IW HG++ L    +H+N Q   I+FTME+E NG L FLD+
Sbjct:  341 FSFDGQFYEQTEGVAMGSPLSPAIANFYMENFEKQALNS--APLKPKCFFRYVDDTFLIWPHGKDALDLFFAHMNSQHPSIKFTMEKETNGQLPFLDI 436          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1262.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1V4J2_HETAK1.010e-6298.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWS7_HETAK1.060e-4076.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001ED8AC493.280e-2140.40uncharacterized protein LOC124171241 n=1 Tax=Ischn... [more]
UPI001ED86C831.600e-1840.40uncharacterized protein LOC124171266 n=1 Tax=Ischn... [more]
A0A8B7Y354_ACAPL1.750e-1842.42uncharacterized protein LOC110977630 n=1 Tax=Acant... [more]
A0A8B8A4D7_ACAPL3.360e-1840.21uncharacterized protein LOC110990212 n=1 Tax=Acant... [more]
UPI001E2757EA4.560e-1842.86uncharacterized protein LOC123675351 n=1 Tax=Harmo... [more]
UPI00096B5B4C6.550e-1843.37uncharacterized protein LOC109598606 n=1 Tax=Aethi... [more]
UPI000C1FEA716.840e-1838.78uncharacterized protein LOC111420560 n=2 Tax=Ontho... [more]
UPI001ED867161.040e-1740.82uncharacterized protein LOC124172478 n=1 Tax=Ischn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1262contigH-akashiwo_Contig1262:234177..234476 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size300
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.46e-21
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387137.2828972-CDS-H-akashiwo_Contig1262:234176..2344761681387137.2828972-CDS-H-akashiwo_Contig1262:234176..234476Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1262 234177..234476 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1262.3.1prot_H-akashiwo_Contig1262.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1262 234177..234476 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1262.3.1

>prot_H-akashiwo_Contig1262.3.1 ID=prot_H-akashiwo_Contig1262.3.1|Name=mRNA_H-akashiwo_Contig1262.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
YIYCFDGRIFTQSDGTPIGKSISGPIAGMYLNWFEEQFIYSDRCKHKPTL
WVRMRDDVFIIWDHGEEKLQELLSHVNGQEKRIQFTMEREKNGVLAFLDL
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mRNA from alignment at H-akashiwo_Contig1262:234177..234476-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1262.3.1 ID=mRNA_H-akashiwo_Contig1262.3.1|Name=mRNA_H-akashiwo_Contig1262.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1262:234177..234476- (Heterosigma akashiwo CCMP452)
TATATTTACTGTTTTGATGGGCGGATCTTCACGCAGTCTGATGGGACTCC TATCGGCAAGTCCATCTCCGGTCCCATTGCAGGTATGTATTTGAACTGGT TCGAAGAACAGTTCATCTATAGTGACAGGTGCAAGCACAAGCCCACCCTG TGGGTGAGGATGAGGGATGATGTGTTCATCATTTGGGACCATGGGGAGGA GAAGCTACAGGAGCTTTTGAGCCATGTGAATGGCCAGGAGAAGCGGATCC AGTTCACTATGGAGAGAGAGAAGAACGGGGTGCTTGCTTTTTTGGACCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1262:234177..234476-

>mRNA_H-akashiwo_Contig1262.3.1 ID=mRNA_H-akashiwo_Contig1262.3.1|Name=mRNA_H-akashiwo_Contig1262.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig1262:234177..234476- (Heterosigma akashiwo CCMP452)
TATATTTACTGTTTTGATGGGCGGATCTTCACGCAGTCTGATGGGACTCC
TATCGGCAAGTCCATCTCCGGTCCCATTGCAGGTATGTATTTGAACTGGT
TCGAAGAACAGTTCATCTATAGTGACAGGTGCAAGCACAAGCCCACCCTG
TGGGTGAGGATGAGGGATGATGTGTTCATCATTTGGGACCATGGGGAGGA
GAAGCTACAGGAGCTTTTGAGCCATGTGAATGGCCAGGAGAAGCGGATCC
AGTTCACTATGGAGAGAGAGAAGAACGGGGTGCTTGCTTTTTTGGACCTG
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