mRNA_H-akashiwo_Contig1262.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1262.1.1
Unique NamemRNA_H-akashiwo_Contig1262.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 302 bits (774), Expect = 6.140e-99
Identity = 148/152 (97.37%), Postives = 149/152 (98.03%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHLSQ 456
            DLLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTA EMFDNLAEAYYFTSLDMLWAYWSV LREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQG QYEFALCFLDDVLCYSPRNFTLHLYHLSQ
Sbjct:  119 DLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQ 270          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 302 bits (774), Expect = 8.220e-97
Identity = 148/152 (97.37%), Postives = 149/152 (98.03%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHLSQ 456
            DLLKQGVISESSSNFNAPIVMVAKK+GETRMCLDLRALNAITTPSKFPLPTA EMFDNLAEAYYFTSLDMLWAYWSV LREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQG QYEFALCFLDDVLCYSPRNFTLHLYHLSQ
Sbjct:  119 DLLKQGVISESSSNFNAPIVMVAKKSGETRMCLDLRALNAITTPSKFPLPTAREMFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQ 270          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 222 bits (565), Expect = 1.270e-69
Identity = 106/132 (80.30%), Postives = 117/132 (88.64%), Query Frame = 1
Query:   61 MVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHLSQ 456
            MV KKTGETRMCLDLR+LNAITTP+KFPLPT  EMFD L  AYYF+SLDMLWAYWSV LR+ DK KTAFTVRN+KYAFNVMCFGLTNAPATFSHLVNKVFQG Q++FALCFLDDVLCY+  +F+LHL  L +
Sbjct:    1 MVKKKTGETRMCLDLRSLNAITTPAKFPLPTPREMFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEE 132          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A5N6PXX9_9ASTR (Reverse transcriptase domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PXX9_9ASTR)

HSP 1 Score: 149 bits (375), Expect = 1.450e-38
Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL 450
            D+L QG+I  S S F++P+++V KK G  R C+D RALNAIT P +FP+PT  E+FD L  A YF+ LD+L  Y  ++L+EG  +KTAF   +  Y F VM FGLTNAP+TF  L+N +F+ F  +F L F DD+L YSP  +  HL HL
Sbjct:  591 DMLAQGIIRPSYSPFSSPVLLVRKKDGTWRFCVDYRALNAITIPDRFPIPTIDELFDELHGAVYFSKLDLLSGYHQIRLQEGAITKTAFRTYDGHYEFLVMPFGLTNAPSTFQRLMNDIFRPFLRKFVLVFFDDILIYSPT-WDEHLSHL 739          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A392PP11_9FABA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PP11_9FABA)

HSP 1 Score: 137 bits (344), Expect = 4.930e-38
Identity = 71/150 (47.33%), Postives = 95/150 (63.33%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL 450
            D+L+QG+I  S+S F++PI++V KK G  R C D RALN IT    FP+PT  E+ D L  A YF+ LD+   Y  + ++  D+ KTAF   +  Y + VM FGLTNAPATF  L+NK+FQ    +F L F DD+L YS  ++  HL HL
Sbjct:    4 DMLEQGIIQPSNSPFSSPILLVKKKDGSWRFCTDYRALNTITVKDSFPMPTVDELLDELYGAMYFSKLDLRSGYHQILVKPEDRCKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQSALRKFVLVFFDDILVYST-SWREHLIHL 152          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A0P5U4C5_9CRUS (Polyprotein of retroviral origin (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5U4C5_9CRUS)

HSP 1 Score: 137 bits (345), Expect = 1.270e-37
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 1
Query:    4 LLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL 450
            +L   ++ ES S F A IVMV KK GE RMC+D RALN IT   K+PLP   +  D L  + YF+ LD+L  YW +++ E DK KTAF     +Y FN M FGLTNAP+TF   +N + +   Y+FAL +LDD++ +S  + T H+ HL
Sbjct:   62 MLSNKILRESHSPFAAAIVMVPKKDGEMRMCIDYRALNKITVKDKYPLPRIDDTIDALCGSVYFSILDLLSDYWQIEIEESDKHKTAFICEFGQYEFNRMPFGLTNAPSTFQRAMNNILKTVLYKFALVYLDDIIVFS-NSITDHVTHL 209          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A5N6P893_9ASTR (Reverse transcriptase domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P893_9ASTR)

HSP 1 Score: 146 bits (368), Expect = 1.320e-37
Identity = 75/150 (50.00%), Postives = 100/150 (66.67%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL 450
            D+L QG+I  S S F++P+++V KK G  R C+D RALNAIT P +FP+PT  E+FD L  A YF+ LD+L  Y  ++L+EG  +KTAF   +  Y F VM FGLTNA +TF  L+N +F+ F  +F L F DD+L YSP  +  HL HL
Sbjct:  920 DMLAQGIIRPSYSPFSSPVLLVRKKDGTLRFCVDYRALNAITIPDRFPIPTIDELFDELHGAVYFSKLDLLSGYHQIRLQEGAITKTAFRTHDGHYEFLVMPFGLTNALSTFQRLMNDIFRPFLRKFVLVFFDDILIYSPT-WDEHLSHL 1068          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A392MG25_9FABA (Transposon Tf2-1 polyprotein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MG25_9FABA)

HSP 1 Score: 143 bits (360), Expect = 3.570e-37
Identity = 73/150 (48.67%), Postives = 99/150 (66.00%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL 450
            ++L+QG+I  S+S F++PI++V KK G  R C D RALNAIT   KFP+PT  E+ D L  A YF+ LD+   Y  + ++  D+ KTAF   +  Y + VM FGLTNAPATF  L+NK+FQ    +F L F DD+L YSP ++ +HL HL
Sbjct:  141 EMLEQGIIQPSNSPFSSPILLVKKKDGSWRFCTDYRALNAITIKDKFPMPTVDELLDELYGAQYFSKLDLRSGYHQIMVKPEDRFKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQFALRKFVLVFFDDILVYSP-SWNIHLQHL 289          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A8M8VDF3_SESIN (uncharacterized protein LOC105178433 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A8M8VDF3_SESIN)

HSP 1 Score: 144 bits (363), Expect = 6.110e-37
Identity = 71/155 (45.81%), Postives = 98/155 (63.23%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHLSQSTT 465
            D+L+ G+I  + S + AP++   K  G  RMC D RALN IT  +K+P+P   + FD L+ A YFT +D+   YW V+++EGD++KT    R   + F VM FGLTNAPATFS L+N+V  GF  EF + +LDD++ YS R    H+ HL Q  T
Sbjct:  655 DMLESGIIKPAKSPYGAPVLFQKKADGSLRMCCDYRALNKITVKNKYPIPLVADCFDRLSRAKYFTKIDLRSGYWQVRIKEGDEAKTTVVTRYGAFEFLVMPFGLTNAPATFSTLMNQVLHGFLDEFVVVYLDDIVIYS-RTLAEHVDHLRQVLT 808          
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Match: A0A392P4D4_9FABA (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P4D4_9FABA)

HSP 1 Score: 135 bits (341), Expect = 6.820e-37
Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLPTATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL 450
            ++L+QG+I  S+S F++PI++V KK G  R C D RALNAIT    FP+PT  E+ D L  A YF+ LD+   Y  + ++  D+ KTAF   +  Y + VM FGLTNAPATF  L+NK+FQ    +F L F DD+L YS  ++  HL HL
Sbjct:   56 EMLQQGIIQPSNSPFSSPILLVKKKDGSWRFCTDYRALNAITVKDSFPMPTVDELLDELYGAKYFSKLDLRSGYHQILVQPDDRHKTAFRTHHGHYEWLVMPFGLTNAPATFQCLMNKIFQTALRKFVLVFFDDILVYSS-SWISHLSHL 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1262.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK6.140e-9997.37Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK8.220e-9797.37Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK1.270e-6980.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5N6PXX9_9ASTR1.450e-3850.67Reverse transcriptase domain-containing protein n=... [more]
A0A392PP11_9FABA4.930e-3847.33Reverse transcriptase domain-containing protein (F... [more]
A0A0P5U4C5_9CRUS1.270e-3746.98Polyprotein of retroviral origin (Fragment) n=1 Ta... [more]
A0A5N6P893_9ASTR1.320e-3750.00Reverse transcriptase domain-containing protein n=... [more]
A0A392MG25_9FABA3.570e-3748.67Transposon Tf2-1 polyprotein (Fragment) n=1 Tax=Tr... [more]
A0A8M8VDF3_SESIN6.110e-3745.81uncharacterized protein LOC105178433 n=1 Tax=Sesam... [more]
A0A392P4D4_9FABA6.820e-3747.33Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1262contigH-akashiwo_Contig1262:132030..132506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4096.XP_009797113.1
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve
Model size477
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.8e-36
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta,44PGP@71274|asterids
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size477
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387137.2442749-CDS-H-akashiwo_Contig1262:132029..1325061681387137.2442749-CDS-H-akashiwo_Contig1262:132029..132506Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1262 132030..132506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1262.1.1prot_H-akashiwo_Contig1262.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1262 132030..132506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1262.1.1

>prot_H-akashiwo_Contig1262.1.1 ID=prot_H-akashiwo_Contig1262.1.1|Name=mRNA_H-akashiwo_Contig1262.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=159bp
DLLKQGVISESSSNFNAPIVMVAKKTGETRMCLDLRALNAITTPSKFPLP
TATEMFDNLAEAYYFTSLDMLWAYWSVQLREGDKSKTAFTVRNRKYAFNV
MCFGLTNAPATFSHLVNKVFQGFQYEFALCFLDDVLCYSPRNFTLHLYHL
SQSTTYCS*
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mRNA from alignment at H-akashiwo_Contig1262:132030..132506-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1262.1.1 ID=mRNA_H-akashiwo_Contig1262.1.1|Name=mRNA_H-akashiwo_Contig1262.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1262:132030..132506- (Heterosigma akashiwo CCMP452)
GATTTACTGAAACAAGGAGTAATCTCAGAGAGTTCAAGTAATTTCAACGC ACCAATAGTAATGGTGGCTAAGAAAACTGGGGAGACACGAATGTGCTTGG ACTTAAGAGCTCTGAACGCCATCACAACGCCATCAAAATTTCCTTTACCA ACAGCCACGGAGATGTTCGACAATTTGGCGGAAGCATACTACTTTACCAG TTTGGACATGCTATGGGCATATTGGAGTGTCCAATTGAGAGAAGGGGACA AATCCAAGACAGCTTTTACTGTGAGGAACAGAAAGTATGCATTCAACGTG ATGTGCTTTGGACTAACAAACGCACCAGCCACTTTCAGCCATTTGGTAAA CAAGGTTTTTCAGGGGTTCCAGTATGAGTTTGCACTATGTTTTCTGGATG ACGTACTGTGTTACTCACCCAGGAATTTCACACTACATCTGTACCATTTG AGTCAGAGCACTACCTACTGTTCATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1262:132030..132506-

>mRNA_H-akashiwo_Contig1262.1.1 ID=mRNA_H-akashiwo_Contig1262.1.1|Name=mRNA_H-akashiwo_Contig1262.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=477bp|location=Sequence derived from alignment at H-akashiwo_Contig1262:132030..132506- (Heterosigma akashiwo CCMP452)
GATTTACTGAAACAAGGAGTAATCTCAGAGAGTTCAAGTAATTTCAACGC
ACCAATAGTAATGGTGGCTAAGAAAACTGGGGAGACACGAATGTGCTTGG
ACTTAAGAGCTCTGAACGCCATCACAACGCCATCAAAATTTCCTTTACCA
ACAGCCACGGAGATGTTCGACAATTTGGCGGAAGCATACTACTTTACCAG
TTTGGACATGCTATGGGCATATTGGAGTGTCCAATTGAGAGAAGGGGACA
AATCCAAGACAGCTTTTACTGTGAGGAACAGAAAGTATGCATTCAACGTG
ATGTGCTTTGGACTAACAAACGCACCAGCCACTTTCAGCCATTTGGTAAA
CAAGGTTTTTCAGGGGTTCCAGTATGAGTTTGCACTATGTTTTCTGGATG
ACGTACTGTGTTACTCACCCAGGAATTTCACACTACATCTGTACCATTTG
AGTCAGAGCACTACCTACTGTTCATGA
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