mRNA_H-akashiwo_Contig1261.4.2 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1261.4.2
Unique NamemRNA_H-akashiwo_Contig1261.4.2
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A6V1NRX6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NRX6_HETAK)

HSP 1 Score: 672 bits (1733), Expect = 2.660e-242
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 2
Query:  191 MALAKYAVKSNILNRSGHGPVAEKRWNKDTAEPLCVLDIEEGEYYTACKDKLYREGGHKPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCFRVLVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSIMRRYECNNTGNQDDGYLSLSSRTSSKSFLRGHDALSEQEHVATIAAENDAIMGQIAHEVSTALCRSAF 1174
            MALAKYAVKSNILNRSGHGPVAEKRWNKDTAEPLCVLDIEEGEYYTACKDKLYREGGHKPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCFRVLVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSIMRRYECNNTGNQDDGYLSLSSRTSSKSFLRGHDALSEQEHVATIAAENDAIMGQIAHEVSTALCRSAF
Sbjct:    1 MALAKYAVKSNILNRSGHGPVAEKRWNKDTAEPLCVLDIEEGEYYTACKDKLYREGGHKPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCFRVLVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSIMRRYECNNTGNQDDGYLSLSSRTSSKSFLRGHDALSEQEHVATIAAENDAIMGQIAHEVSTALCRSAF 328          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: UPI001B280149 (Hemolysin III family protein n=1 Tax=bacterium TaxID=1869227 RepID=UPI001B280149)

HSP 1 Score: 103 bits (256), Expect = 7.060e-22
Identity = 68/207 (32.85%), Postives = 100/207 (48.31%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGC----FRVLVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSIM 973
            KP LRG  H + FV   L   LL+       T +   ++ LS    FG S+ YHR+NW        M+RLD+  IF +I G+YT   + LL    G  ++ L+W+G ++G     F V   K +S  + +V  GC + PF+ +    L       +    AL      V+   R D  P  FG+HE FH L+ AAS+A + A  S++
Sbjct:    9 KPLLRGVSHHVAFVVALLAGGLLVLGSHGAETMVASLVYALSLATLFGVSALYHRKNWQPAA-RMVMRRLDHSAIFLLIAGTYTPVCMLLLEPGVGKLLLGLVWAGAILGIAQSVFWVNAPKAVSATI-YVAFGCLVIPFLPQTAAALGGMRLALIAGGGALYALGAVVYALKRPDPWPAVFGYHEIFHALVIAASVAHFAAIASVV 213          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: UPI001F4616DE (hemolysin III family protein n=2 Tax=Leucobacter TaxID=55968 RepID=UPI001F4616DE)

HSP 1 Score: 89.4 bits (220), Expect = 9.210e-17
Identity = 65/208 (31.25%), Postives = 105/208 (50.48%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGW---LFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGC-FRV--LVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSI 970
            KP  RG +H   F   P+     +  +++    +  W   +F+L+ ++ FG S+ YHR NW     + F +RLD+  IF +I G+YT  AL  L  + G+ +++L+WSG L+G  FRV  +   R   V  +VL+G +   +I ++  H +      V +   L      V+   R + +P  FGFHE FH L T A +  + AA  +
Sbjct:   22 KPLWRGWIHAGTF---PVAVAAGIVLISVAHGPVAKWASAVFMLTSMLLFGISALYHRINWSPRTKQLF-RRLDHANIFLLIAGTYTPLALLALPHDQGILLLILVWSGALLGIGFRVFWIGAPRWLYVPLYVLLGWAAIMYIVDI-AHANLASMVLVVVGGLLYTLGSVVYGMKRPNPVPGVFGFHEIFHALTTIAFLCHWTAALLV 224          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A2D6PGN7_9ACTN (Hemolysin III n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6PGN7_9ACTN)

HSP 1 Score: 89.0 bits (219), Expect = 9.870e-17
Identity = 64/210 (30.48%), Postives = 98/210 (46.67%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCFRVLVQKRMSNV------VSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLA-AFSIM 973
            KP  RG  H + F      A +++        +    L+ LS +  FG S+ YHR +W      R M+RLD+  IF  I  +YT  A+  L   +   V+ L W G L+G +   V+ R  +       + ++L+G  L P +++   HL       + I   L  +   VF   R D  P+TFGFHE FH+L   A+   Y+A AF ++
Sbjct:   11 KPLFRGVTHRVAFTASLTLAPIMVVRAPGIAPRFVTALYCLSIVALFGVSALYHRIDWGPRG-RRVMRRLDHATIFVAIAATYTPVAVFALSSWAARLVLSLAWGGALIGTW---VRLRFPDAPTPAVALPYLLVGWCLLPVVADAWHHLGVAGFVLLLIGGLLYTSGAVVFAFRRPDPWPDTFGFHEVFHLLTVTAATLHYVAFAFIVL 216          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A2E0ZSX8_9ACTN (Hemolysin III n=2 Tax=root TaxID=1 RepID=A0A2E0ZSX8_9ACTN)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-16
Identity = 65/207 (31.40%), Postives = 99/207 (47.83%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCF-RVLVQKRMSNVVS--FVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLA-AFSIM 973
            KP  RG  H   F+     A +++        +    L+ LS +  FG S+ YHR +W        MQRLD+  IF  I  +YT  A   L   +   V+ L+W G L+G + R+      + VV+  ++++G  L P +++   HL       + I   L  +   VF   R D  P+TFGFHE FH+L  AA+   Y+A AF ++
Sbjct:   10 KPLFRGVAHRAAFIASLTLAPIMVVRAPGIVPRFVTALYCLSIVALFGVSALYHRVDWGPRG-RSVMQRLDHATIFVAIAATYTPVAAFALSPWAARLVLSLVWGGALIGTWVRLRFTDAPTPVVALPYLVVGWCLLPVVADAWHHLGVAGFVLLLIGGLLYTSGAVVFAFRRPDPWPDTFGFHEVFHLLTIAAAALHYVAFAFFVL 215          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A851HFE4_9MICC (Hemolysin III family protein n=1 Tax=Micrococcaceae bacterium TaxID=1904863 RepID=A0A851HFE4_9MICC)

HSP 1 Score: 88.6 bits (218), Expect = 1.500e-16
Identity = 69/204 (33.82%), Postives = 100/204 (49.02%), Query Frame = 2
Query:  362 HKPRLRGTLHEIQFVCWPLYAHLLL---RELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCF---RVLVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHV--LITAASIAT 949
            HKPRLRG +H I      L A L+     E T QR  +   +F L  +I FG+S+ YH  NW T      ++R+D+  IF +I G+YT  A+ LL     + ++ +IWSG L+G       L   R   V  ++L+G     F+ +  +   S   WC+ +           +   R +  PNTFGFHE FH+  +I  AS AT
Sbjct:   20 HKPRLRGWIHLIAAPI-ALVAGLIAIFQPEHTYQRVSVA--VFALCSVILFGSSAVYHLGNW-TPKVRAVLRRVDHSNIFLLIAGTYTPLAVLLLETSQTILLLSIIWSGALVGIAVRQLWLSAPRWVYVAVYLLLGWVAIWFLPDFYQAGGSAVVWCIVLGGVFYSLGAVAYGLKRPNPFPNTFGFHEVFHLCTVIAWASHAT 219          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A2E6XRM5_9ACTN (Hemolysin III n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2E6XRM5_9ACTN)

HSP 1 Score: 87.4 bits (215), Expect = 3.530e-16
Identity = 66/207 (31.88%), Postives = 102/207 (49.28%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMG-CFRVLVQKRMSNVVS--FVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLA-AFSIM 973
            KP LRG  H   F      A +++        +    L+ LS +  FG S+ YHR NW        MQRLD+  IF  I  +YT  A+  L   +   V+ ++W G L+G   R+      +++V+  ++++G SL P +++  ++L       + I   L  A   VF   R D  P+TFGFHE FH+L  AA+   Y+A AF ++
Sbjct:   12 KPLLRGVSHRSAFTASLTLAPIMIVVAPGIWPRFITALYSLSIVALFGVSALYHRINWGQRG-RLTMQRLDHVTIFVAIAAAYTPVAVFALSPWAMKVVLPMVWGGALLGMAIRLRYTDAPTSLVALPYLVVGWSLLPVVTDAWQNLGVAGFLLLLIGGLLYTAGGIVFAIRRPDPWPDTFGFHEIFHMLTVAAAALHYVAFAFIVL 217          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A2D6KJU9_9ACTN (Hemolysin III n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6KJU9_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 4.830e-16
Identity = 65/207 (31.40%), Postives = 102/207 (49.28%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCF-RVLVQKRMSNVVS--FVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLA-AFSIM 973
            KP LRG  H   F      A +++        +    L+ LS +  FG S+ YHR +W     +  MQRLD+  IF  I  +YT  A+  L   +   V+ ++W G L+G   R+  +   + +V+  ++++G SL P +++  ++L       + I   L  A   VF   R D  P+TFGFHE FHVL   A+   Y+A AF ++
Sbjct:   12 KPLLRGVSHRSAFTAALTLAPIMIVVAPGIWPRFITALYSLSIVALFGVSALYHRIDWSRRG-QLIMQRLDHITIFIAIAATYTPVAVFALSPRAMKVVLPMVWGGALIGAVVRLRSRDAPTPLVALPYLVVGWSLLPVVADAWQNLGVAGFVLLLIGGLLYTAGGIVFALRRPDPWPDTFGFHEVFHVLTVVAAALHYVAFAFIVL 217          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A0U4WV66_9MICO (Hemolysin III family protein n=2 Tax=Microcella alkaliphila TaxID=279828 RepID=A0A0U4WV66_9MICO)

HSP 1 Score: 87.8 bits (216), Expect = 5.120e-16
Identity = 68/214 (31.78%), Postives = 107/214 (50.00%), Query Frame = 2
Query:  347 YREGGHKPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGW---LFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGC-FRV--LVQKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSI 970
            YR G  KP  RG +H   F   PL   L L  + L    +  W   +F+LS L+ FG S+ YHR  W ++     ++RLD+  IF +I G+YT  +L  L  + GL +++L+WSG L+G  FRV  +   R   V  ++L+G +   +I +L+    +     V    A    A+ ++   + + +P  FGFHE FH L   A +  + A   +
Sbjct:   40 YRAGEKKPTWRGWIHAGTF---PLAIVLGLVLVALGDGPMARWSSAVFVLSSLLLFGISATYHRFTW-SDRMRVLLKRLDHANIFLLIAGTYTPLSLLALPLDKGLILLVLVWSGALLGIGFRVFWITAPRWVYVPLYLLLGWAAVLYIGDLVAANVAMMVLIVAGGLAYTAGAI-IYGMKKPNPIPGVFGFHEIFHALTVVAFLCHWTATLLV 248          
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Match: A0A849WSM1_9PROT (Hemolysin III family protein n=1 Tax=Bdellovibrionaceae bacterium TaxID=2026715 RepID=A0A849WSM1_9PROT)

HSP 1 Score: 86.7 bits (213), Expect = 5.600e-16
Identity = 62/211 (29.38%), Postives = 110/211 (52.13%), Query Frame = 2
Query:  365 KPRLRGTLHEIQFVCWPLYAHLLLRELTLQR-TKITGWLFLLSYLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLGDESGLAVMLLIWSGCLMGCFRVLV---QKRMSNVVSFVLIGCSLFPFISELLEHLSSFECWCVFISWALLGAAVY-----VFTSHRGDFLPNTFGFHETFHVLITAASIATYLAAFSI 970
            KP LRG  H+  F    L A  +L  L     T+    ++++S L  +G SS YHR NW  +   ++++RLD+  IFF+I G+ T  +L  L  E+G  ++ + W   L G  + L      +  + + FVL+G +  P+++E+  +L         I+  + G ++Y     ++ S + D +P+ FG+HE FH+L+  AS+  +   F++
Sbjct:    6 KPILRGHFHQAAFFV-ALGAGSVLTALAKNSGTQQICLIYVISLLTMYGCSSLYHRINWQPSP-RKWLRRLDHAAIFFLIAGTGTPISLLGLKGEAGDNLLKIFWIMALAGVAKELFWIKAPKWLSAIFFVLMGWAGAPYLTEMKTNLGGTN-----IALLITGGSIYTIGALIYASKKPDPMPDFFGYHELFHLLVIIASVLHFAVVFNL 209          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1261.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NRX6_HETAK2.660e-242100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
UPI001B2801497.060e-2232.85Hemolysin III family protein n=1 Tax=bacterium Tax... [more]
UPI001F4616DE9.210e-1731.25hemolysin III family protein n=2 Tax=Leucobacter T... [more]
A0A2D6PGN7_9ACTN9.870e-1730.48Hemolysin III n=2 Tax=Acidimicrobiaceae bacterium ... [more]
A0A2E0ZSX8_9ACTN1.320e-1631.40Hemolysin III n=2 Tax=root TaxID=1 RepID=A0A2E0ZSX... [more]
A0A851HFE4_9MICC1.500e-1633.82Hemolysin III family protein n=1 Tax=Micrococcacea... [more]
A0A2E6XRM5_9ACTN3.530e-1631.88Hemolysin III n=1 Tax=Actinomycetia bacterium TaxI... [more]
A0A2D6KJU9_9ACTN4.830e-1631.40Hemolysin III n=1 Tax=Acidimicrobiaceae bacterium ... [more]
A0A0U4WV66_9MICO5.120e-1631.78Hemolysin III family protein n=2 Tax=Microcella al... [more]
A0A849WSM1_9PROT5.600e-1629.38Hemolysin III family protein n=1 Tax=Bdellovibrion... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1261contigH-akashiwo_Contig1261:152526..154017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1278073.MYSTI_02394
Preferred namehlyIII
PFAMsHlyIII
Model size1289
Max annot lvl1224|Proteobacteria
KEGG koko:K11068
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.7e-20
EggNOG OGsCOG1272@1|root,COG1272@2|Bacteria,1PGRH@1224|Proteobacteria
Descriptionprotein hemolysin III
Cds size1002
COG categoryS
BRITEko00000,ko02042
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387136.811866-UTR-H-akashiwo_Contig1261:152525..1526221681387136.811866-UTR-H-akashiwo_Contig1261:152525..152622Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1261 152526..152622 -
1681387136.843775-UTR-H-akashiwo_Contig1261:153827..1540171681387136.843775-UTR-H-akashiwo_Contig1261:153827..154017Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1261 153828..154017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387136.8234253-CDS-H-akashiwo_Contig1261:152622..1536021681387136.8234253-CDS-H-akashiwo_Contig1261:152622..153602Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1261 152623..153602 -
1681387136.8351817-CDS-H-akashiwo_Contig1261:153805..1538271681387136.8351817-CDS-H-akashiwo_Contig1261:153805..153827Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1261 153806..153827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1261.4.2prot_H-akashiwo_Contig1261.4.2Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1261 152623..153827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1261.4.2

>prot_H-akashiwo_Contig1261.4.2 ID=prot_H-akashiwo_Contig1261.4.2|Name=mRNA_H-akashiwo_Contig1261.4.2|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=334bp
MALAKYAVKSNILNRSGHGPVAEKRWNKDTAEPLCVLDIEEGEYYTACKD
KLYREGGHKPRLRGTLHEIQFVCWPLYAHLLLRELTLQRTKITGWLFLLS
YLICFGASSQYHRRNWPTNDWERFMQRLDYCGIFFIITGSYTVPALCLLG
DESGLAVMLLIWSGCLMGCFRVLVQKRMSNVVSFVLIGCSLFPFISELLE
HLSSFECWCVFISWALLGAAVYVFTSHRGDFLPNTFGFHETFHVLITAAS
IATYLAAFSIMRRYECNNTGNQDDGYLSLSSRTSSKSFLRGHDALSEQEH
VATIAAENDAIMGQIAHEVSTALCRSAFSLGSP*
back to top

mRNA from alignment at H-akashiwo_Contig1261:152526..154017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1261.4.2 ID=mRNA_H-akashiwo_Contig1261.4.2|Name=mRNA_H-akashiwo_Contig1261.4.2|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1492bp|location=Sequence derived from alignment at H-akashiwo_Contig1261:152526..154017- (Heterosigma akashiwo CCMP452)
GTGAGTTTGAGTTTCACTTGGACTTGGCTTTGGACAAGCAGCCGCCCCCA TCAGGACACACACACACAAGTCCCCCTTTCACTTTGAACAAGTAACCACC CCCATCAAGAATTTTCATAGATTACGGGGGGAGTTTTTTTTTGGTGCCCT CTGGGGTGCTTTCATCTTGGGGTCGGTTTCTTGAAGTGCCATGGCGCTCG CAAAATATGCAGGTGAACAGAATTGTTGTATAATTTTGTGTTGAATATTC ATGCATCGTCCTCATCATCACATACCTGTGGAGTTCTTTCTTAAATGAAG TGATTTTTCGAGCGCCTCAATGTGATAAATGGCTCTTGTAGCTCTAGAAT ATATGTATACAAACCACCTATATCTCCTCCCCCTTCTTTGCCGTGTTTCT TCTGAATGGCAACAGTAAAATCCAATATTCTAAATCGTTCAGGCCATGGT CCTGTTGCAGAGAAAAGATGGAACAAGGACACAGCAGAACCTCTTTGTGT TTTGGATATTGAGGAGGGCGAATACTACACTGCGTGCAAGGATAAGTTGT ATCGAGAGGGGGGGCACAAACCACGCCTTCGGGGCACCCTTCACGAAATC CAGTTTGTTTGCTGGCCACTATACGCACACCTCCTTCTTCGGGAATTGAC ACTCCAACGAACAAAAATTACAGGTTGGTTGTTTTTGCTGTCATACCTGA TTTGCTTTGGGGCTTCCTCCCAGTATCATCGACGGAACTGGCCAACAAAC GACTGGGAGCGCTTCATGCAACGACTGGATTATTGCGGCATCTTCTTCAT AATTACTGGCAGCTATACTGTACCAGCACTTTGCCTGTTGGGTGACGAAT CGGGCCTTGCTGTGATGCTTCTCATTTGGTCTGGATGTTTGATGGGCTGC TTTCGTGTACTAGTTCAAAAGAGAATGTCAAATGTGGTTTCGTTTGTATT GATTGGCTGTTCTCTTTTCCCCTTTATATCCGAGCTTCTTGAACATCTGT CTTCTTTTGAATGCTGGTGTGTCTTCATTTCCTGGGCACTCCTTGGTGCA GCAGTTTATGTTTTCACGTCACACCGTGGAGATTTTCTCCCAAACACTTT TGGCTTCCATGAGACATTTCATGTGCTGATTACAGCAGCAAGTATTGCTA CATACCTTGCAGCTTTTAGCATAATGCGGCGCTACGAATGCAACAACACT GGAAATCAAGATGATGGATATTTATCATTGTCATCAAGGACTAGCAGCAA GAGTTTTTTAAGGGGGCATGATGCACTTTCTGAGCAAGAACATGTTGCTA CGATAGCTGCAGAAAATGATGCTATAATGGGACAAATAGCTCATGAAGTA AGTACGGCTCTGTGTAGAAGCGCTTTTTCTTTAGGTAGCCCCTAGTAGCT TCTCTGCTGGCAACAGTTGAAAGGCTGTAAAAAGCGAATGCGCTCTCCTC TCCTATGACTTCCTGGAATCTCCTACCTATTTTCCATACAAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1261:152526..154017-

>mRNA_H-akashiwo_Contig1261.4.2 ID=mRNA_H-akashiwo_Contig1261.4.2|Name=mRNA_H-akashiwo_Contig1261.4.2|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1002bp|location=Sequence derived from alignment at H-akashiwo_Contig1261:152526..154017- (Heterosigma akashiwo CCMP452)
ATGGCGCTCGCAAAATATGCAGTAAAATCCAATATTCTAAATCGTTCAGG
CCATGGTCCTGTTGCAGAGAAAAGATGGAACAAGGACACAGCAGAACCTC
TTTGTGTTTTGGATATTGAGGAGGGCGAATACTACACTGCGTGCAAGGAT
AAGTTGTATCGAGAGGGGGGGCACAAACCACGCCTTCGGGGCACCCTTCA
CGAAATCCAGTTTGTTTGCTGGCCACTATACGCACACCTCCTTCTTCGGG
AATTGACACTCCAACGAACAAAAATTACAGGTTGGTTGTTTTTGCTGTCA
TACCTGATTTGCTTTGGGGCTTCCTCCCAGTATCATCGACGGAACTGGCC
AACAAACGACTGGGAGCGCTTCATGCAACGACTGGATTATTGCGGCATCT
TCTTCATAATTACTGGCAGCTATACTGTACCAGCACTTTGCCTGTTGGGT
GACGAATCGGGCCTTGCTGTGATGCTTCTCATTTGGTCTGGATGTTTGAT
GGGCTGCTTTCGTGTACTAGTTCAAAAGAGAATGTCAAATGTGGTTTCGT
TTGTATTGATTGGCTGTTCTCTTTTCCCCTTTATATCCGAGCTTCTTGAA
CATCTGTCTTCTTTTGAATGCTGGTGTGTCTTCATTTCCTGGGCACTCCT
TGGTGCAGCAGTTTATGTTTTCACGTCACACCGTGGAGATTTTCTCCCAA
ACACTTTTGGCTTCCATGAGACATTTCATGTGCTGATTACAGCAGCAAGT
ATTGCTACATACCTTGCAGCTTTTAGCATAATGCGGCGCTACGAATGCAA
CAACACTGGAAATCAAGATGATGGATATTTATCATTGTCATCAAGGACTA
GCAGCAAGAGTTTTTTAAGGGGGCATGATGCACTTTCTGAGCAAGAACAT
GTTGCTACGATAGCTGCAGAAAATGATGCTATAATGGGACAAATAGCTCA
TGAAGTAAGTACGGCTCTGTGTAGAAGCGCTTTTTCTTTAGGTAGCCCCT
AG
back to top