mRNA_H-akashiwo_Contig1261.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1261.3.1
Unique NamemRNA_H-akashiwo_Contig1261.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A7S3XVA0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVA0_HETAK)

HSP 1 Score: 309 bits (791), Expect = 1.210e-101
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 1
Query:    1 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP 450
            MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFT RNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIP LGHLASREGLKPDPKKIEAVRKLRRP
Sbjct:  173 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRP 322          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A7S3XV63_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV63_HETAK)

HSP 1 Score: 309 bits (791), Expect = 1.730e-99
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 1
Query:    1 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP 450
            MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFT RNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIP LGHLASREGLKPDPKKIEAVRKLRRP
Sbjct:  173 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTVRNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPFLGHLASREGLKPDPKKIEAVRKLRRP 322          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A7S3XU57_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU57_HETAK)

HSP 1 Score: 256 bits (653), Expect = 4.360e-83
Identity = 119/150 (79.33%), Postives = 135/150 (90.00%), Query Frame = 1
Query:    1 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP 450
            MFD L  AYYF+SLDMLWAYWSVPLR+ DK KTAFT RN+KYAFNVMCFGLTNAPATFSHLVNKVFQGCQ++FALCFLDDVLCY+  +F+LHL  L +IF RM  ANLKFKLPKC+FGAAQ+P LGH+A+REGLKPDPKKIEA++KL+RP
Sbjct:   35 MFDQLEGAYYFSSLDMLWAYWSVPLRDEDKHKTAFTVRNKKYAFNVMCFGLTNAPATFSHLVNKVFQGCQHDFALCFLDDVLCYTGPDFSLHLRQLEEIFIRMIKANLKFKLPKCLFGAAQVPFLGHIATREGLKPDPKKIEAIKKLQRP 184          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A6B0VG58_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VG58_IXORI)

HSP 1 Score: 143 bits (361), Expect = 8.080e-37
Identity = 69/148 (46.62%), Postives = 96/148 (64.86%), Query Frame = 1
Query:    7 DNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP 450
            D+L  A YF+SLD+   YW +P+ E DK KTAF   +  Y FNVM FGL NAPATF  +++ + +G +++  LC+LDD++ +S  NF  HL  LSQ+   + AANL+    KC F A  I +LGH+ S+ G++PDP KI+AV    RP
Sbjct:  114 DSLQGAEYFSSLDLRSGYWQIPVNEEDKEKTAFVTPDGLYEFNVMPFGLCNAPATFERMIDNILRGLKWKTCLCYLDDIVIFSS-NFEEHLERLSQVLSCLSAANLQLNTKKCTFAAKTIKILGHVISKHGIRPDPDKIKAVSDFPRP 260          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A015J1N0_RHIIW (Gag-pol fusion protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015J1N0_RHIIW)

HSP 1 Score: 138 bits (348), Expect = 2.230e-36
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAV 432
            + D+L +A +FT+LD+   YW + +R  D+ KTAF  +   Y F VM FGL NAPATF   ++KV  G + +F L +LDDV+ YS + F  H+ HL ++  R+R ANL+ K  KC F AA++  LGH+  +EG+KPDP+K+  +
Sbjct:   54 LLDSLQDAQWFTTLDLASGYWQIKVRAEDQEKTAFITKFGTYEFKVMPFGLCNAPATFQRTMDKVLHGIKEKFVLVYLDDVIIYS-KTFKDHIQHLEEVLNRIRKANLRLKAEKCYFAAAELQFLGHVVGKEGVKPDPEKVNKM 196          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A131XQ77_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A131XQ77_IXORI)

HSP 1 Score: 139 bits (351), Expect = 1.800e-35
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    7 DNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAV 432
            D L  A Y+TSLD+   YW +P+ E DK+KTAF   +  + FNVM FGL NAPATF  +++ + +G ++   LC+LDDV+ +S   F  HL  LS++   +  A L+    KC F A QI VLGHL SR+G++PDP+K+ AV
Sbjct:  130 DTLQGAKYYTSLDLRSGYWQIPMSESDKAKTAFVTPDGLFEFNVMPFGLCNAPATFERMIDSILRGLKWRTCLCYLDDVIVFSS-TFDEHLDRLSEVLSCISGAGLQLNTKKCHFAATQIKVLGHLVSRDGIRPDPEKVRAV 270          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: UPI001C177570 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C177570)

HSP 1 Score: 137 bits (345), Expect = 1.040e-34
Identity = 64/144 (44.44%), Postives = 94/144 (65.28%), Query Frame = 1
Query:    1 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAV 432
            + D+L +A +FT+LD+   YW + +R  D+ KTAF  +   Y F VM FGL NAPATF   ++KV  G + +F L +LDDV+ YS + F  H+ HL ++  R+R ANL+ K  KC F AA++  LGH+  +EG+KPDP+K+  +
Sbjct:  491 LLDSLQDAQWFTTLDLASRYWQIKVRAEDQEKTAFITKFGTYEFKVMPFGLCNAPATFQRTMDKVLHGIKEKFVLVYLDDVIIYS-KTFKDHIQHLEEVLNRIRKANLRLKAEKCHFAAAELQFLGHVVGKEGVKPDPEKVNKM 633          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: UPI001C1C713A (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C1C713A)

HSP 1 Score: 133 bits (334), Expect = 1.270e-34
Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = 1
Query:    1 MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVR 435
            + D+L +A +FT+LD+   YW + +R  D+ KTAF  +   Y F VM FGL NAP TF   ++KV    + +F L +LDDV+ YS + F  H+ HL ++  R+R ANL+ K  KC F AA++  LGH+  +EG+KPDP+K+  ++
Sbjct:  112 LLDSLQDAQWFTTLDLASEYWQIKVRAEDQEKTAFITKFGTYEFKVMPFGLCNAPVTFQRTMDKVLHRIKEKFVLVYLDDVIIYS-KTFKDHIQHLKEVLNRIRKANLRLKAEKCHFAAAELQFLGHVVGKEGVKPDPEKVNKMK 255          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: A0A6G5A8Y6_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A8Y6_RHIMP)

HSP 1 Score: 133 bits (334), Expect = 1.440e-34
Identity = 64/148 (43.24%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    7 DNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP 450
            D L  A +F+SLD+   YW VP+ EGD+ KTAF   +  Y F VM FGL NAPATF  +++ V +G +++  LC+LDD++ +S  +F  HL  L Q+   +  A L+  L KC FGA ++ +LGH+ S++G+ PDP K+ AV    +P
Sbjct:  194 DCLQGAEFFSSLDLRSGYWQVPMAEGDRPKTAFVTPDGLYEFTVMPFGLCNAPATFERMMDTVLRGLKWKTCLCYLDDIVVFSS-DFATHLSRLEQVLTCLSTARLQLNLKKCHFGARKLVILGHVVSKDGILPDPTKLNAVAAFPKP 340          
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Match: L7MA76_RHIPC (RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhipicephalus pulchellus TaxID=72859 RepID=L7MA76_RHIPC)

HSP 1 Score: 136 bits (343), Expect = 2.200e-34
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    7 DNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFGLTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIFKRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP 450
            D+L  A YF+SLD+   YW +P+ E DK KTAF   +  Y FNVM FGL NAPATF  +++ V +G +++  LC+LDD++ +S   F  HL  L ++   + +A L+    KC F    I VLGH+ S++G++PDP KI AV +  RP
Sbjct:  375 DSLQGAEYFSSLDLRSGYWQIPMHEDDKEKTAFATPDGLYEFNVMPFGLCNAPATFERMIDTVLRGLKWKTCLCYLDDIVIFSS-TFPQHLQRLDEVLTCLASAGLQLNTKKCCFATKSIKVLGHVVSKDGIRPDPDKIAAVLRFPRP 521          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1261.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVA0_HETAK1.210e-10198.67Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XV63_HETAK1.730e-9998.67Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A7S3XU57_HETAK4.360e-8379.33Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6B0VG58_IXORI8.080e-3746.62RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
A0A015J1N0_RHIIW2.230e-3644.44Gag-pol fusion protein n=1 Tax=Rhizophagus irregul... [more]
A0A131XQ77_IXORI1.800e-3546.48RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]
UPI001C1775701.040e-3444.44Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C1C713A1.270e-3442.76Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A6G5A8Y6_RHIMP1.440e-3443.24Putative tick transposon (Fragment) n=1 Tax=Rhipic... [more]
L7MA76_RHIPC2.200e-3443.92RNA-directed DNA polymerase (Fragment) n=1 Tax=Rhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1261contigH-akashiwo_Contig1261:112565..113017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI061188-PA
PFAMsBaculo_F,RVT_1,rve
Model size453
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.38e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,3ECJT@33342|Paraneoptera
DescriptionK02A2.6-like
Cds size453
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387136.7798593-CDS-H-akashiwo_Contig1261:112564..1130171681387136.7798593-CDS-H-akashiwo_Contig1261:112564..113017Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1261 112565..113017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1261.3.1prot_H-akashiwo_Contig1261.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1261 112565..113017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1261.3.1

>prot_H-akashiwo_Contig1261.3.1 ID=prot_H-akashiwo_Contig1261.3.1|Name=mRNA_H-akashiwo_Contig1261.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=151bp
MFDNLAEAYYFTSLDMLWAYWSVPLREGDKSKTAFTARNRKYAFNVMCFG
LTNAPATFSHLVNKVFQGCQYEFALCFLDDVLCYSPRNFTLHLYHLSQIF
KRMRAANLKFKLPKCIFGAAQIPVLGHLASREGLKPDPKKIEAVRKLRRP
*
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mRNA from alignment at H-akashiwo_Contig1261:112565..113017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1261.3.1 ID=mRNA_H-akashiwo_Contig1261.3.1|Name=mRNA_H-akashiwo_Contig1261.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1261:112565..113017+ (Heterosigma akashiwo CCMP452)
ATGTTTGACAATTTGGCGGAGGCATACTACTTTACCAGCTTGGACATGCT ATGGGCATATTGGAGCGTTCCGCTGAGAGAGGGGGACAAGTCCAAGACAG CTTTTACTGCGAGGAACAGAAAGTATGCATTCAACGTGATGTGCTTTGGA TTAACAAATGCACCAGCTACTTTCAGCCATTTGGTAAACAAGGTTTTTCA GGGGTGCCAGTATGAGTTTGCACTATGTTTTCTGGATGACGtACTGTGCT ACTCACCCAGGAACTTCACATTACATCTGTACCATTTGAGTCAGATATTC AAGAGGATGAGAGCAGCCAACTTGAAGTTCAAACTGCCCAAATGCATATT CGGAGCAGCGCAGATTCCTGTTCTGGGACATTTGGCGTCGAGAGAAGGGT TGAAACCAGACCCGAAGAAAATTGAAGCAGTGAGGAAGCTACGGAGACCG TAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1261:112565..113017+

>mRNA_H-akashiwo_Contig1261.3.1 ID=mRNA_H-akashiwo_Contig1261.3.1|Name=mRNA_H-akashiwo_Contig1261.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=453bp|location=Sequence derived from alignment at H-akashiwo_Contig1261:112565..113017+ (Heterosigma akashiwo CCMP452)
ATGTTTGACAATTTGGCGGAGGCATACTACTTTACCAGCTTGGACATGCT
ATGGGCATATTGGAGCGTTCCGCTGAGAGAGGGGGACAAGTCCAAGACAG
CTTTTACTGCGAGGAACAGAAAGTATGCATTCAACGTGATGTGCTTTGGA
TTAACAAATGCACCAGCTACTTTCAGCCATTTGGTAAACAAGGTTTTTCA
GGGGTGCCAGTATGAGTTTGCACTATGTTTTCTGGATGACGtACTGTGCT
ACTCACCCAGGAACTTCACATTACATCTGTACCATTTGAGTCAGATATTC
AAGAGGATGAGAGCAGCCAACTTGAAGTTCAAACTGCCCAAATGCATATT
CGGAGCAGCGCAGATTCCTGTTCTGGGACATTTGGCGTCGAGAGAAGGGT
TGAAACCAGACCCGAAGAAAATTGAAGCAGTGAGGAAGCTACGGAGACCG
TAA
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