mRNA_H-akashiwo_Contig1261.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1261.1.1
Unique NamemRNA_H-akashiwo_Contig1261.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A6V1NGB2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NGB2_HETAK)

HSP 1 Score: 197 bits (500), Expect = 8.600e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVAR 285
            AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVAR
Sbjct:   60 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVAR 154          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A7S2W1Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1Z2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.310e-36
Identity = 68/95 (71.58%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVAR 285
            AKHHGLRK+DLA++FTEEL+NDDTPESVFLQ+NDEIIVRK+R P+P EP +CP   +F HM  LL D EH DVT +VGP    EVRAHKAILVAR
Sbjct:   58 AKHHGLRKDDLAFFFTEELQNDDTPESVFLQKNDEIIVRKRRKPQP-EPHVCPDKAYFKHMRFLLDDSEHKDVTFVVGPCKD-EVRAHKAILVAR 150          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: D7G2Y3_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Y3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.930e-25
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPP--------EPE-ICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVAR 285
            AKHHGLRK+DLAYYFTEEL+N+DTPE+VFL   DEI+VR+++             +P+ +CP   F + MG+LL D EH DVT  VGP    EV+AHK  LVAR
Sbjct:   66 AKHHGLRKDDLAYYFTEELQNEDTPETVFLLVRDEIVVRRRKSKSDSVSDDEAEVDPDSLCPDDMFIEQMGSLLDDDEHCDVTFFVGPSR-TEVKAHKTHLVAR 168          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A836CHY6_9STRA (BTB/POZ protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.490e-24
Identity = 59/103 (57.28%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEP------EICPVS--KFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVAR 285
            AKHHGLRKEDLAYYFTE L+N+DTPES+FLQ  DE+IVRK+R  +  E       E    S  +F    GALL D EH DVT  VG D    V+AHK +LVAR
Sbjct:   65 AKHHGLRKEDLAYYFTEALQNEDTPESIFLQPRDEVIVRKRRLNQSDEDSEDDDIEDLKASGERFISQFGALLADDEHCDVTFFVG-DAKAPVKAHKVVLVAR 166          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: K0SW24_THAOC (BTB domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SW24_THAOC)

HSP 1 Score: 103 bits (256), Expect = 5.610e-24
Identity = 59/115 (51.30%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGP--------------------DPPVEVRAHKAILVAR 285
            AK+HGLRK+DL YYF   LEN+DTPE+V LQR D I+VRKKR P+PPEP     ++FF  M  LL D+EHMD   LV P                    D  VE+RAHK IL AR
Sbjct:   69 AKYHGLRKDDLEYYFVNPLENEDTPETVQLQRGDIIMVRKKRKPEPPEP-AADDTEFFKDMKELLDDEEHMDTVFLVHPTGGASKAGTKRRADSSPVSDDDLVEIRAHKCILTAR 182          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A6U4KVI1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KVI1_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.860e-22
Identity = 51/97 (52.58%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPP-KPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVE-VRAHKAILVAR 285
            AKHHGLRK+DL YYFTE+L+ DDTP SV L +NDEIIVRKKR   K     +C    +F +   LL D EH D + ++  +P  E + AHKA+L AR
Sbjct:   58 AKHHGLRKDDLVYYFTEQLQPDDTPASVHLLKNDEIIVRKKREEEKEAMDPMCSDETYFQNFSRLLSDTEHCDCSFVLSNEPDEEPISAHKAVLTAR 154          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A6U5DPK9_9STRA (Hypothetical protein n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5DPK9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.880e-21
Identity = 53/112 (47.32%), Postives = 65/112 (58.04%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDP-----------------PVEVRAHKAILVAR 285
            AK+HGLRK+DL YYF   LEN+DTPESV LQR D I+VRKKR P PP+      S+FF  M  L+ D +HMD   ++ P                   P E+RAHK +L AR
Sbjct:   68 AKYHGLRKDDLEYYFVNPLENEDTPESVQLQRADTIMVRKKRKPDPPKA-AADDSEFFKDMKELMDDVDHMDAVFVIEPPDADNSSSSSDGDKQNNRQPTEIRAHKCVLTAR 178          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: B7GB01_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GB01_PHATC)

HSP 1 Score: 95.9 bits (237), Expect = 1.880e-21
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPV--EVRAHKAILVAR 285
            AK+HGLRKEDL YYF   LEN+DTPESV LQR D I+VRK+R  +PPE       +F   M  LL D+EHMD   ++  D     E+RAHK++L AR
Sbjct:   64 AKYHGLRKEDLEYYFVNLLENEDTPESVQLQRGDTIMVRKRRKHEPPEA-AADDEEFIKDMRELLDDEEHMDAVFVLNKDMDCQQEIRAHKSVLTAR 159          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A7R9Y833_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y833_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.780e-21
Identity = 52/97 (53.61%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPE-ICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVE-VRAHKAILVAR 285
            AKHHGLRK+DL YYFTE+L  DDTP SV L +NDEIIVRKKR  +    + +C    +F++   LL D EH D + ++  +P  E +RAHKAIL AR
Sbjct:   89 AKHHGLRKDDLVYYFTEQLLPDDTPASVHLLKNDEIIVRKKREEETEHMDPMCSDETYFENFSRLLTDTEHCDCSFVLRSEPDGEPIRAHKAILGAR 185          
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Match: A0A7S1D044_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D044_CYCTE)

HSP 1 Score: 93.2 bits (230), Expect = 1.450e-20
Identity = 54/110 (49.09%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    1 AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPEICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPV---------------EVRAHKAILVAR 285
            AK+HGLRK+DL YYF   LEN+DTPESV LQR D I+VRK+R P PPE       +FF  M  LL D+EHMD    V  +  V               ++RAHK IL AR
Sbjct:   20 AKYHGLRKDDLEYYFVNPLENEDTPESVQLQRGDTIMVRKRRKPDPPEV-ASNDDEFFKDMAELLDDEEHMDTVFHVPQETGVKGEASAELSKSENVVQIRAHKCILTAR 128          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1261.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1NGB2_HETAK8.600e-61100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2W1Z2_9STRA1.310e-3671.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7G2Y3_ECTSI1.930e-2554.81BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CHY6_9STRA3.490e-2457.28BTB/POZ protein n=1 Tax=Tribonema minus TaxID=3033... [more]
K0SW24_THAOC5.610e-2451.30BTB domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A6U4KVI1_9STRA9.860e-2252.58Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U5DPK9_9STRA1.880e-2147.32Hypothetical protein n=4 Tax=Corethron hystrix Tax... [more]
B7GB01_PHATC1.880e-2153.61Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7R9Y833_9STRA2.780e-2153.61Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1D044_CYCTE1.450e-2049.09Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1261contigH-akashiwo_Contig1261:26033..28274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G2Y3
PFAMsBTB
Model size312
Max annot lvl2759|Eukaryota
KEGG koko:K10523
KEGG Pathwayko04340,ko04341,map04340,map04341
KEGG ModuleM00384
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.16e-26
EggNOG OGsKOG1987@1|root,KOG1987@2759|Eukaryota
Descriptionprotein modification by small protein conjugation or removal
Cds size312
COG categoryS
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387136.7364485-CDS-H-akashiwo_Contig1261:26032..261841681387136.7364485-CDS-H-akashiwo_Contig1261:26032..26184Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1261 26033..26184 -
1681387136.75091-CDS-H-akashiwo_Contig1261:28114..282741681387136.75091-CDS-H-akashiwo_Contig1261:28114..28274Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1261 28115..28274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1261.1.1prot_H-akashiwo_Contig1261.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1261 26033..28274 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1261.1.1

>prot_H-akashiwo_Contig1261.1.1 ID=prot_H-akashiwo_Contig1261.1.1|Name=mRNA_H-akashiwo_Contig1261.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
AKHHGLRKEDLAYYFTEELENDDTPESVFLQRNDEIIVRKKRPPKPPEPE
ICPVSKFFDHMGALLQDKEHMDVTLLVGPDPPVEVRAHKAILVARWVTSV
PCV*
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mRNA from alignment at H-akashiwo_Contig1261:26033..28274-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1261.1.1 ID=mRNA_H-akashiwo_Contig1261.1.1|Name=mRNA_H-akashiwo_Contig1261.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2242bp|location=Sequence derived from alignment at H-akashiwo_Contig1261:26033..28274- (Heterosigma akashiwo CCMP452)
GCCAAACATCATGGGTTGAGAAAAGAAGATCTAGCTTATTATTTCACAGA AGAGCTTGAGAATGATGATACTCCAGAAAGTGTTTTTCTTCAAAGGAATG ATGAAATCATCGTGCGGAAAAAACGTCCACCCAAGCCCCCAGAACCTGAA ATATGTCCAGGTGTGTTGGGGTTGAAACCTTGATGAGCTTTTTTTTTTCT TGTGGCAATCATTATATTCTTGATCTGTGCATTAGCTAAGCATTCATAAC TTACGCATCCTACTTTGGCGCGTGGTGGGTACTCTCCTGCCCGCCATGGG ATTTGTCATGCGGGTTGGGACTCGCACTCTTGCGGGTTTTACTCTTCTTG TGGTGGTAGGCCGGGGGAAGGCCAGTCAACCTGGTCCCAATTCTGTCTCT GTAGCCCCGTACATCTACTTAACAAGCTTAACGACGGTTGACCTATGCTT TAGAGTGTCAGTTCACATTTTCAAATCATGGATTTACTCTGTGGTTCATC GCCGGCACTTTTGTTTGGTTGTGATGATGAGATGCTCAGATCAGTAGTAA ACATTGCGCATTGTATTGTAAGGATGCAAGCCTTGGGAATGCACTGCGCA ATTAAACCGGCTCTTTCATTGAAGTAGGTCGCCAGGCATAAAAATTCTCG ATATATACCGAGAATTCTCGGTAAAAATCGGGCCTCGAAAAAAAAACAAA AAACATCTCGACGACTTGTCGTAAAAAGATCTCGGTAGGTTGTGAATATT TTGTTAAATGGGCAGACCCGCCCATCCGGGGTACAAATTCACATTTGTAC CCCAAAGTTTTGGGCTCCAAATTTTTTACATTTTTGAAGACTGTATCATC GTTTAAAAAGGTATAAATAGTTTTAAGGGTTATTTGGTCTGGACCCCAAA TCTTTAGTTTGGCGCCTTGCGGGAGAAGCACTTTTTCATCTTAGGGATCA ACTCAAAAGCCGAAGCTTTGTTCGATTTGGATAAAAAAGTTGGCCTTGGG GTACAAAAGCTGTCTTAAGTTGTCAAGCGCTTAGTCTTAAAAGGTTGTAG AATTGCAGGAAATTACCTTCTAAAACAGTGTTCAAAAGTACCCCAAATCG TTATCCTGATTAAAAAATTGAGTACTAGAAACTGGCAAGTCGAGATTCAA TGATTTGTACTGCCGCTGCACCGCTTTGAAAGTTTTGATCGCTGTGCGCT TCCTTATCTTCACCAAACCATGAAATATATATGCCTTTTACGAAAGCAAA AACAAAATTTGATTTGCTGCTACTGACCGACCTCCGCAGGGTCAAAGGTA CCGTGCGGAGGCATTTTTTTTTTGCTCCGGACCGATCTCCGTAGGGTCAA AGGTAGAGGCAAAATTGCCCCCCAAAAAACGAAATTTTTTAGCTTGTACC GCATTGCCAGTATACGCTGGCAGCCGCCCGTGACAAGGAGGTTTGATTTT GATTTTATCACAAGGCTAGTTGCTGGTGGGAGTGAGCCCACCAGCAATAT ATATTACAACAACCACAACAAACATGCACAAGCAACCACAACAACAAGGA AACTTCTGCAGCTACATATGAATTGCGCTCCCATCAACTTCACTTGCCAC CCGCATCACGAACCTTTTCAACATAAACTTACCAATCAGATCACGATAAC AATACAACTCCCTAAACATAAAACTGACCAATCATCATTCATGTTTCGCA TGTACCTTATTAGCACCATGGGTAAATAAACTATACCAGCTTTTCCCTCC AAAATGGCACTAGGCCATACACTAGGCTGATTACTTTTGCTTAGCAGCCG GTGTTGCTTCGCGCTCACGAACTCCCTCTCGGGCAGCCCTTGTACTCCGG AAATCTATATCAATAGGTTTATCTTACTGGAAAGGCGTGTCGATGAAGGC CAGCCACCAGCCTCGGCTGGTGGTACTTGTATGCTAGAAACAACGCTGTC CACGTCAACACTTGTAATGATTTAGAAACCTTTGACATATATCGCCTCTT TGGCAATGTGGAGACATACTCAGTGATGATGGAGGCTGCTTTTCTGTTAA ATGCAACACATCACCGTATGCATCCTACTCTGCTTCACAGTGTCAAAGTT TTTTGATCACATGGGAGCACTACTTCAAGATAAAGAACACATGGACGTAA CCCTACTGGTGGGACCAGACCCTCCAGTGGAAGTCAGGGCCCACAAAGCA ATACTTGTGGCCAGGTGGGTAACCAGCGTTCCATGTGTATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1261:26033..28274-

>mRNA_H-akashiwo_Contig1261.1.1 ID=mRNA_H-akashiwo_Contig1261.1.1|Name=mRNA_H-akashiwo_Contig1261.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig1261:26033..28274- (Heterosigma akashiwo CCMP452)
GCCAAACATCATGGGTTGAGAAAAGAAGATCTAGCTTATTATTTCACAGA
AGAGCTTGAGAATGATGATACTCCAGAAAGTGTTTTTCTTCAAAGGAATG
ATGAAATCATCGTGCGGAAAAAACGTCCACCCAAGCCCCCAGAACCTGAA
ATATGTCCAGTGTCAAAGTTTTTTGATCACATGGGAGCACTACTTCAAGA
TAAAGAACACATGGACGTAACCCTACTGGTGGGACCAGACCCTCCAGTGG
AAGTCAGGGCCCACAAAGCAATACTTGTGGCCAGGTGGGTAACCAGCGTT
CCATGTGTATGA
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