mRNA_H-akashiwo_Contig126.22.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig126.22.1
Unique NamemRNA_H-akashiwo_Contig126.22.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A7S4DHX1_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHX1_HETAK)

HSP 1 Score: 139 bits (349), Expect = 1.400e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 204
            RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR
Sbjct:   94 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 161
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BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A3N4PYM0_9BACT (Carbonic anhydrase n=1 Tax=Chitinophaga lutea TaxID=2488634 RepID=A0A3N4PYM0_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 8.990e-23
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 204
            RNVAN+V + D NLL VL+YA++VL+VEHIL+VGHYGCGGV+AA T Q+YG +  WLK I+DV R HR
Sbjct:   64 RNVANMVVHTDMNLLTVLEYAIKVLKVEHILVVGHYGCGGVKAAMTNQNYGIINPWLKHIKDVYRFHR 131
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BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A6B2LMX0_9EUKA (Carbonic anhydrase (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LMX0_9EUKA)

HSP 1 Score: 92.8 bits (229), Expect = 2.360e-22
Identity = 42/67 (62.69%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLH 201
            RNVAN+V N DTN  +V+Q+AVE+LQV HI++ GHYGCGGV AA   +D G +E WL+ IRDV RLH
Sbjct:   58 RNVANLVVNTDTNAQSVIQFAVEILQVRHIIVCGHYGCGGVNAATMPKDLGHIENWLRNIRDVYRLH 124
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BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: UPI00168B7C6E (carbonic anhydrase n=1 Tax=Hymenobacter montanus TaxID=2771359 RepID=UPI00168B7C6E)

HSP 1 Score: 94.0 bits (232), Expect = 3.490e-22
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLH 201
            RN+ANVV + D NLL+VLQYAVEVL+VE IL+VGHYGCGGV AA +++ YG ++ WL  +RDV RLH
Sbjct:   61 RNIANVVVHTDMNLLSVLQYAVEVLEVEVILVVGHYGCGGVAAAASSKQYGLIDNWLTNVRDVVRLH 127
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BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A4R6XER8_9GAMM (Carbonic anhydrase n=3 Tax=Marinomonas TaxID=28253 RepID=A0A4R6XER8_9GAMM)

HSP 1 Score: 93.6 bits (231), Expect = 3.650e-22
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 204
            RN+ANVV + D N L+V+QYAV+VLQV+HI++VGHYGCGG++AA   Q+YG ++ WL+ I+DV R+H+
Sbjct:   65 RNIANVVVHTDLNCLSVIQYAVDVLQVKHIMVVGHYGCGGIKAAMETQEYGLIDNWLRHIKDVYRIHK 132
[Close]
BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: UPI001ADCDD8B (carbonic anhydrase n=1 Tax=Chitinophaga chungangae TaxID=2821488 RepID=UPI001ADCDD8B)

HSP 1 Score: 93.6 bits (231), Expect = 3.810e-22
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 204
            RNVAN+V + D NLL VL+YAV+VL VEHIL+VGHYGCGGV+AA T Q++G +  WLK I+DV RLH+
Sbjct:   64 RNVANMVVHTDMNLLTVLEYAVKVLGVEHILVVGHYGCGGVRAAMTQQNFGIINPWLKHIKDVYRLHK 131
[Close]
BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: UPI001903D27C (carbonate dehydratase n=1 Tax=Rhabdochromatium marinum TaxID=48729 RepID=UPI001903D27C)

HSP 1 Score: 93.6 bits (231), Expect = 4.910e-22
Identity = 41/67 (61.19%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLH 201
            RN+ANVV + D N L+V+QYAV+VLQVEHI++ GHYGCGGV+AA T++D+G ++ WL+ +RDV R H
Sbjct:   64 RNIANVVVHTDLNCLSVIQYAVDVLQVEHIIVCGHYGCGGVKAALTSEDHGLIDNWLRHLRDVGRFH 130
[Close]
BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A7Y5QR72_9FLAO (Carbonic anhydrase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Y5QR72_9FLAO)

HSP 1 Score: 93.2 bits (230), Expect = 5.150e-22
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 204
            RN+AN+V + D NLL+VLQYAVE+LQV+H+++ GHYGCGGV AA T +D G +  WL+ I+DV RLHR
Sbjct:   64 RNIANMVVHTDLNLLSVLQYAVEILQVKHVIVCGHYGCGGVHAAMTHRDLGLINKWLRNIKDVYRLHR 131
[Close]
BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A1A8TDR9_9GAMM (Carbonic anhydrase n=2 Tax=Marinomonas TaxID=28253 RepID=A0A1A8TDR9_9GAMM)

HSP 1 Score: 93.2 bits (230), Expect = 5.150e-22
Identity = 40/68 (58.82%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLHR 204
            RN+ANVV + D N L+V+QYAV+VLQV+HI++VGHYGCGG++AA   ++YG ++ WL+ I+DV RLH+
Sbjct:   65 RNIANVVVHTDLNCLSVIQYAVDVLQVKHIMVVGHYGCGGIKAAMETKEYGLIDNWLRHIKDVHRLHK 132
[Close]
BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Match: A0A6B2LH32_9EUKA (Carbonic anhydrase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LH32_9EUKA)

HSP 1 Score: 93.2 bits (230), Expect = 5.260e-22
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDYGKLEGWLKGIRDVKRLH 201
            RNVAN+V N D+N  +V+Q+AVEVLQV+HI++ GHYGCGGV AA   QD G +E WL+ IRDV R+H
Sbjct:   58 RNVANLVVNTDSNAQSVIQFAVEVLQVQHIIVCGHYGCGGVHAATKPQDLGPIENWLRNIRDVYRIH 124
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig126.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DHX1_HETAK1.400e-39100.00Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A3N4PYM0_9BACT8.990e-2366.18Carbonic anhydrase n=1 Tax=Chitinophaga lutea TaxI... [more]
A0A6B2LMX0_9EUKA2.360e-2262.69Carbonic anhydrase (Fragment) n=1 Tax=Arcella inte... [more]
UPI00168B7C6E3.490e-2265.67carbonic anhydrase n=1 Tax=Hymenobacter montanus T... [more]
A0A4R6XER8_9GAMM3.650e-2258.82Carbonic anhydrase n=3 Tax=Marinomonas TaxID=28253... [more]
UPI001ADCDD8B3.810e-2266.18carbonic anhydrase n=1 Tax=Chitinophaga chungangae... [more]
UPI001903D27C4.910e-2261.19carbonate dehydratase n=1 Tax=Rhabdochromatium mar... [more]
A0A7Y5QR72_9FLAO5.150e-2261.76Carbonic anhydrase n=1 Tax=Flavobacteriales bacter... [more]
A0A1A8TDR9_9GAMM5.150e-2258.82Carbonic anhydrase n=2 Tax=Marinomonas TaxID=28253... [more]
A0A6B2LH32_9EUKA5.260e-2262.69Carbonic anhydrase n=1 Tax=Arcella intermedia TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig126contigH-akashiwo_Contig126:1474805..1476310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5011.R4XG03
Preferred nameNCE103
PFAMsPro_CA
Model size207
Max annot lvl4751|Fungi
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004089,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0006730,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0016829,GO:0016835,GO:0016836,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0035690,GO:0036166,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070887,GO:0071241,GO:0071244,GO:0072347,GO:0097237,GO:0098754,GO:1900239,GO:1901700,GO:1901701,GO:1990748
Exons2
Evalue2.33e-22
EggNOG OGsCOG0288@1|root,KOG1578@2759|Eukaryota,38BQ7@33154|Opisthokonta,3P2HN@4751|Fungi,3QQFE@4890|Ascomycota,3MDZB@451866|Taphrinomycotina
EC4.2.1.1
DescriptionReversible hydration of carbon dioxide
Cds size204
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387136.6324475-CDS-H-akashiwo_Contig126:1474804..14748821681387136.6324475-CDS-H-akashiwo_Contig126:1474804..1474882Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig126 1474805..1474882 +
1681387136.6445422-CDS-H-akashiwo_Contig126:1476182..14763081681387136.6445422-CDS-H-akashiwo_Contig126:1476182..1476308Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig126 1476183..1476308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig126.22.1prot_H-akashiwo_Contig126.22.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig126 1474805..1476308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig126.22.1

>prot_H-akashiwo_Contig126.22.1 ID=prot_H-akashiwo_Contig126.22.1|Name=mRNA_H-akashiwo_Contig126.22.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=68bp
RNVANVVANGDTNLLAVLQYAVEVLQVEHILLVGHYGCGGVQAADTAQDY
GKLEGWLKGIRDVKRLHR
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mRNA from alignment at H-akashiwo_Contig126:1474805..1476310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig126.22.1 ID=mRNA_H-akashiwo_Contig126.22.1|Name=mRNA_H-akashiwo_Contig126.22.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1506bp|location=Sequence derived from alignment at H-akashiwo_Contig126:1474805..1476310+ (Heterosigma akashiwo CCMP452)
AGGAACGTCGCCAATGTGGTCGCCAACGGTGACACGAACCTGTTGGCGGT
GCTGCAGTACGCGGTCGAAGTCCTCCAGGTGCATCGACCACCGTTCCTAC
AATAATGCGATCTGTCGGACACGGCAAGGCTGCTTCTGATTTGCACACTG
TGTGTGTGCTGACTGTGGGGGCATGGTCGCCCAGTTCCCCTTCACCGCCG
CTGCCACCGTTGGCCGACTCGTGTTGCCCCAGAATTCACAAAGAGTGGGA
TTGACAATGCAACACCTACGGTTACACACTTTCGTGCAAGAGGTGCAGGA
GTTGTTTTCCCATCAGCACCGCCTTGATTCTATAGCGCAGGGGAGTCCAT
GACTGTAGCTGGGTTCTTTTACGATGCATAAAAGCGGACCCTGGGCACCG
ACCCCCTCTTTTCACCCCCCTCCCTGGCTGCGCTGCTGCCGCCCGCCCAT
GGTGGTGTGTGGGCGCCTCAAAGACTGCCGTTATCGCCCGCCTCTCGCAT
ATATCCACCCTCTGTACAAAAATGACTCCTTGTTTGGTTCTTTCCTCAAT
ACAAATCTGACTGTCTATTATCGTCACCCTAAAAATATATTTAGTAGTAA
TTCTTTCTTGCTTCACACCAAGCAATCATTTGGAATTGTTTCATTTTGGA
GTCGCCATGCAGTCAATCTAACGTGTTGTTTTGGCCGAAAGGAGGAAAGG
AGACCTATAGTAATATACCTCTTCATTTTCCTCACCCACCGCATCGTTCA
GTAGCTCAGTTCAGAGGTGCTTGCTCAAGTGATATTTAGCCCCACAATTA
TCAAACCACCATTTTTTTTTTTTTTTGTTTGTATACATTCTACTTGCAAT
GCGTTCCCTCACATCCTGAACCATACAACCACCGTCTATTTGTAGGCTGC
CTTGGCATCTGAGCACTTCGTCGGACTAAGTCTGGCTACTGCGCGCTCCG
ACTTGGACCCCCCCCCCACCCTGCAATCCTCTCCAGCGCCTGAAGCGCAT
GGCTGCAGTTGCACCTTCCTTTCTTCCTCTCTCCTTCCGAAAGCGCAAAC
TGTGAAATTGCACTGGCGCTCATTCCTTCAAAGGAAGCAGCCCAATCAGG
AAAGCTACAAAGAACCATGCACTTGTTATTTTCTTCGTCCGAGAAGGAGG
GTGAAACCATGAGCAGGCCCCCTGCATCCTTCTTCCTCCCACTGTGGTCA
TCGGGCGCCAGCTCCTCTCCACCCCCTCCCCTGCCCGCCCATGATTGAAA
TGGAGGCCGGGGCTTTCGTCCTTGTAGTTTTCTAAGAGGCCGGACCTCAA
ATATATTAAAATCGTCGTCATCCACGACTCCTCCATCGAAGTTCCCCCCT
CCTCTGCCGGGGGCGGGCGGGGGGGCAGGTGGAGCACATCTTGCTGGTGG
GCCACTACGGGTGCGGGGGCGTGCAGGCGGCGGACACGGCGCAGGACTAC
GGCAAGCTGGAGGGCTGGCTCAAGGGCATCCGCGACGTCAAGCGCCTGCA
CCGCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig126:1474805..1476310+

>mRNA_H-akashiwo_Contig126.22.1 ID=mRNA_H-akashiwo_Contig126.22.1|Name=mRNA_H-akashiwo_Contig126.22.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=204bp|location=Sequence derived from alignment at H-akashiwo_Contig126:1474805..1476310+ (Heterosigma akashiwo CCMP452)
AGGAACGTCGCCAATGTGGTCGCCAACGGTGACACGAACCTGTTGGCGGT
GCTGCAGTACGCGGTCGAAGTCCTCCAGGTGGAGCACATCTTGCTGGTGG
GCCACTACGGGTGCGGGGGCGTGCAGGCGGCGGACACGGCGCAGGACTAC
GGCAAGCTGGAGGGCTGGCTCAAGGGCATCCGCGACGTCAAGCGCCTGCA
CCGC
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