mRNA_H-akashiwo_Contig126.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig126.18.1
Unique NamemRNA_H-akashiwo_Contig126.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: G5AG16_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AG16_PHYSP)

HSP 1 Score: 52.8 bits (125), Expect = 5.090e-7
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MDDAA  GHL +VQWLH NR+EGCT  AM+
Sbjct:    1 MDDAAANGHLLVVQWLHENRSEGCTTDAMD 30
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: A0A7S3XPJ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ4_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 1.240e-6
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAM 88
            MD AA RGHL +V+WLH NR+EGCT+ AM
Sbjct:    4 MDQAADRGHLHVVEWLHENRSEGCTEAAM 32
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: A0A8J5IFG2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IFG2_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.030e-6
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAM 88
            MD+AA RGHL +VQWLH NRTEGC+ +AM
Sbjct:    1 MDEAASRGHLEMVQWLHSNRTEGCSYRAM 29
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: G4Z6I9_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z6I9_PHYSP)

HSP 1 Score: 50.8 bits (120), Expect = 2.140e-6
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MD AAG GHL +V+WLH NR+EGCT +A+E
Sbjct:    1 MDTAAGSGHLEVVKWLHVNRSEGCTTRAIE 30
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: A0A7S4DAC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAC4_HETAK)

HSP 1 Score: 50.8 bits (120), Expect = 2.630e-6
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MD AAG GHL +V+WLH NR+EGCT +AM+
Sbjct:    3 MDFAAGNGHLCVVEWLHANRSEGCTTEAMD 32
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: A0A5D6XQP7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQP7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.080e-6
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MD AA RGHL IV+WLH +RTEGCT  AM+
Sbjct:    1 MDQAATRGHLEIVEWLHEHRTEGCTTDAMD 30
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: A0A329SL80_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SL80_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.220e-6
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MD AA RGH  +V+WLH NR+EGCTK AM+
Sbjct:    1 MDVAASRGHFDVVKWLHANRSEGCTKAAMD 30
[Close]
BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: G4Z9L6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z9L6_PHYSP)

HSP 1 Score: 50.8 bits (120), Expect = 7.430e-6
Identity = 20/30 (66.67%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MD A+  GHL +VQWLHHNR EGCT +AM+
Sbjct:    1 MDLASRNGHLEVVQWLHHNRLEGCTTEAMD 30
[Close]
BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: G4Z8J3_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z8J3_PHYSP)

HSP 1 Score: 49.3 bits (116), Expect = 8.370e-6
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAME 91
            MD AA  GHL +VQWLH NR+EGCT KAM+
Sbjct:    1 MDRAACCGHLEMVQWLHKNRSEGCTTKAMD 30
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BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Match: A0A485L6S3_9STRA (Aste57867_16588 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L6S3_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.840e-6
Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = 2 
Query:    2 MDDAAGRGHLGIVQWLHHNRTEGCTKKAM 88
            MD AAG+GHL +VQ+LH NRTEGCT  AM
Sbjct:    1 MDTAAGQGHLEVVQFLHENRTEGCTTLAM 29
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig126.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G5AG16_PHYSP5.090e-770.00Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A7S3XPJ4_HETAK1.240e-668.97Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8J5IFG2_9STRA2.030e-672.41Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4Z6I9_PHYSP2.140e-666.67Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A7S4DAC4_HETAK2.630e-666.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6XQP7_9STRA3.080e-670.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A329SL80_9STRA6.220e-666.67Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
G4Z9L6_PHYSP7.430e-666.67Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
G4Z8J3_PHYSP8.370e-670.00Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A485L6S3_9STRA8.840e-672.41Aste57867_16588 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig126contigH-akashiwo_Contig126:1305580..1305994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size231
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387136.2214127-CDS-H-akashiwo_Contig126:1305579..13056591681387136.2214127-CDS-H-akashiwo_Contig126:1305579..1305659Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig126 1305580..1305659 -
1681387136.2319703-CDS-H-akashiwo_Contig126:1305843..13059941681387136.2319703-CDS-H-akashiwo_Contig126:1305843..1305994Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig126 1305844..1305994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig126.18.1prot_H-akashiwo_Contig126.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig126 1305580..1305994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig126.18.1

>prot_H-akashiwo_Contig126.18.1 ID=prot_H-akashiwo_Contig126.18.1|Name=mRNA_H-akashiwo_Contig126.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=77bp
HGRCSGPGAPGHCPVAAPQPNRGVHQESHGRSGHQRAPARGGVAGRKPQG
GLRVLLPGQGGGGQQPGVPGVDVRGAR
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mRNA from alignment at H-akashiwo_Contig126:1305580..1305994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig126.18.1 ID=mRNA_H-akashiwo_Contig126.18.1|Name=mRNA_H-akashiwo_Contig126.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=415bp|location=Sequence derived from alignment at H-akashiwo_Contig126:1305580..1305994- (Heterosigma akashiwo CCMP452)
CATGGACGATGCAGCGGGCCGGGGGCACCTGGGCATTGTCCAGTGGCTGC
ACCACAACCGAACCGAGGGGTGCACCAAGAAAGCCATGGAAGAAGCGGCC
ATCAACGGGCACCTGCACGTGGCGGAGTGGCTGGCCGCAAACCGCAAGGA
GGTGGGCCTTGGTGGCACGGTCAGTCTCTTGGCCCCCTGCATGGACGGCA
TGGCGTGCGCCATGCGCCTTTTGAAGCGCCAGGGTTAGATGCCCGCACCT
GGTCAGTCTCATGCCCTCTGCCCTTCTTCCTTGGCCGCCCCCGCCCGGCC
TTGGCCCCCCCCCCTCCTCCCGTGCCCCCTGCCAGGGCTGCGGGTACTTC
TTCCTGGACAAGGCGGCGGCGGCCAACAACCTGGCGTGCCTGGAGTGGAT
GTGCGAGGCGCGCGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig126:1305580..1305994-

>mRNA_H-akashiwo_Contig126.18.1 ID=mRNA_H-akashiwo_Contig126.18.1|Name=mRNA_H-akashiwo_Contig126.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=231bp|location=Sequence derived from alignment at H-akashiwo_Contig126:1305580..1305994- (Heterosigma akashiwo CCMP452)
CATGGACGATGCAGCGGGCCGGGGGCACCTGGGCATTGTCCAGTGGCTGC
ACCACAACCGAACCGAGGGGTGCACCAAGAAAGCCATGGAAGAAGCGGCC
ATCAACGGGCACCTGCACGTGGCGGAGTGGCTGGCCGCAAACCGCAAGGA
GGGCTGCGGGTACTTCTTCCTGGACAAGGCGGCGGCGGCCAACAACCTGG
CGTGCCTGGAGTGGATGTGCGAGGCGCGCGG
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