mRNA_H-akashiwo_Contig1259.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1259.15.1
Unique NamemRNA_H-akashiwo_Contig1259.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A7S4DBJ0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBJ0_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 9.610e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2
Query:   32 LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF
Sbjct:   70 LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 124          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A8B7ZRV7_ACAPL (Sodium channel protein n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZRV7_ACAPL)

HSP 1 Score: 53.1 bits (126), Expect = 1.610e-6
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 2
Query:   50 PAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            P  N+S LR FR+LR LKT+S IPGL++II+ALL S+ M+G ++ L FF
Sbjct:  220 PVGNLSGLRTFRVLRALKTISVIPGLKSIINALLRSLKMLGEVLLLTFF 268          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: UPI001885C0A6 (LOW QUALITY PROTEIN: sodium channel protein type 4 subunit alpha A n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI001885C0A6)

HSP 1 Score: 52.8 bits (125), Expect = 2.210e-6
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 2
Query:   59 NVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            NVSALR FR+LR LKT++ IPGL+TI+ AL+ SV  MGN++ L  F
Sbjct:  237 NVSALRTFRVLRALKTITVIPGLKTIVGALIQSVKKMGNVMVLTVF 282          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A1A6HIU8_NEOLE (Ion_trans domain-containing protein n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6HIU8_NEOLE)

HSP 1 Score: 50.8 bits (120), Expect = 2.770e-6
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   14 YTSNLRLVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            +T N+  V   +   NVSALR FR+LR LKT+S IPGL+TI+ AL+ SV  + +++ L  F
Sbjct:   22 WTKNVEYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVF 82          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A2C9MAI3_BIOGL (Sodium channel protein n=2 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9MAI3_BIOGL)

HSP 1 Score: 52.4 bits (124), Expect = 3.020e-6
Identity = 27/50 (54.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:   47 LPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            LP+VNV  LR FR+LR LKT+S +PGL+T++SALL +  M+  ++ L FF
Sbjct:  230 LPSVNVQGLRTFRVLRALKTVSIVPGLKTMVSALLRAFKMLFEVILLTFF 279          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A662YLW2_ACIRT (Sodium channel protein type 3 subunit alpha n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A662YLW2_ACIRT)

HSP 1 Score: 52.0 bits (123), Expect = 4.100e-6
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   14 YTSNLRLVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            Y SN R V   +   NVSALR FR+LR LKT+S IPGL+TI+ AL+ SV  + +++ L  F
Sbjct:  115 YFSNPRYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVF 175          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A8C4BIM8_9TELE (Sodium channel protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4BIM8_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 4.130e-6
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   32 LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            L EFV P  NVSALR FR+LR LKT+S IPGL+TI++AL+ SV  + +++ L  F
Sbjct:  208 LTEFV-PMGNVSALRTFRVLRTLKTISVIPGLKTIVAALIQSVKKLADVMILTVF 261          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A8C4BIH6_9TELE (Sodium channel protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4BIH6_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 4.130e-6
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   32 LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            L EFV P  NVSALR FR+LR LKT+S IPGL+TI++AL+ SV  + +++ L  F
Sbjct:  208 LTEFV-PMGNVSALRTFRVLRTLKTISVIPGLKTIVAALIQSVKKLADVMILTVF 261          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A8C4BEU6_9TELE (Sodium channel protein n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4BEU6_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 4.130e-6
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   32 LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            L EFV P  NVSALR FR+LR LKT+S IPGL+TI++AL+ SV  + +++ L  F
Sbjct:  208 LTEFV-PMGNVSALRTFRVLRTLKTISVIPGLKTIVAALIQSVKKLADVMILTVF 261          
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Match: A0A8C4G1H1_9TELE (Sodium channel protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4G1H1_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 4.130e-6
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2
Query:   32 LVEFVLPAVNVSALRLFRILRPLKTLSKIPGLRTIISALLNSVAMMGNIVFLLFF 196
            L EFV P  NVSALR FR+LR LKT+S IPGL+TI++AL+ SV  + +++ L  F
Sbjct:  205 LTEFV-PMGNVSALRTFRVLRTLKTISVIPGLKTIVAALIQSVKKLADVMILTVF 258          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1259.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DBJ0_HETAK9.610e-24100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8B7ZRV7_ACAPL1.610e-657.14Sodium channel protein n=1 Tax=Acanthaster planci ... [more]
UPI001885C0A62.210e-660.87LOW QUALITY PROTEIN: sodium channel protein type 4... [more]
A0A1A6HIU8_NEOLE2.770e-647.54Ion_trans domain-containing protein n=1 Tax=Neotom... [more]
A0A2C9MAI3_BIOGL3.020e-654.00Sodium channel protein n=2 Tax=Biomphalaria glabra... [more]
A0A662YLW2_ACIRT4.100e-650.82Sodium channel protein type 3 subunit alpha n=1 Ta... [more]
A0A8C4BIM8_9TELE4.130e-656.36Sodium channel protein n=1 Tax=Denticeps clupeoide... [more]
A0A8C4BIH6_9TELE4.130e-656.36Sodium channel protein n=1 Tax=Denticeps clupeoide... [more]
A0A8C4BEU6_9TELE4.130e-656.36Sodium channel protein n=3 Tax=Denticeps clupeoide... [more]
A0A8C4G1H1_9TELE4.130e-656.36Sodium channel protein n=1 Tax=Denticeps clupeoide... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1259contigH-akashiwo_Contig1259:173591..174102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size200
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387135.4169743-CDS-H-akashiwo_Contig1259:173590..1736661681387135.4169743-CDS-H-akashiwo_Contig1259:173590..173666Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1259 173591..173666 -
1681387135.4276373-CDS-H-akashiwo_Contig1259:173980..1741021681387135.4276373-CDS-H-akashiwo_Contig1259:173980..174102Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1259 173981..174102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1259.15.1prot_H-akashiwo_Contig1259.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1259 173591..174102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1259.15.1

>prot_H-akashiwo_Contig1259.15.1 ID=prot_H-akashiwo_Contig1259.15.1|Name=mRNA_H-akashiwo_Contig1259.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=66bp
MYIYIHIKPQVGRVCLASCQCVCSPIVPYIEASQDPFQDSWPADHHQCAS
ELRRDDGQHCLPAVLR
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mRNA from alignment at H-akashiwo_Contig1259:173591..174102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1259.15.1 ID=mRNA_H-akashiwo_Contig1259.15.1|Name=mRNA_H-akashiwo_Contig1259.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=512bp|location=Sequence derived from alignment at H-akashiwo_Contig1259:173591..174102- (Heterosigma akashiwo CCMP452)
ATGTATATATATATACACATCAAACCTCAGGTTGGTAGAGTTTGTCTTGC CAGCTGTCAATGTGTCTGCTCTCCGATTGTTCCGTATATTGAGGCCTCTC AAGACCCTTTCCAAGATTCCTGGTATGTAGTCTTGCTGAGTTTACAAGCA CTCGTACTTTACCTGCATTGTGCACCTTTTTCTGCACTACATATATGGCC ATGATGGGATCATACACATCTTATAGTATTGTGGTAGATCATCTTGTTGT AATTTGATCGCCGTGCCGTTACGAATTGCTCATGGGGGCGTAAAACATAG GATTGATTTGTTTTGTTTTTTTACCATCATGCTGGCGCCATCTCTATAAG TGCTGGATTGGGTCAATACATTTTCTGTATACATGCTGCGCGTTGGGGGT GGGGGTGTGGGGTGTTGTGGATTGGGCTGGGGGCAGGCCTGCGGACCATC ATCAGTGCGCTTCTGAACTCCGTCGCGATGATGGGCAACATTGTCTTCCT GCTGTTCTTCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1259:173591..174102-

>mRNA_H-akashiwo_Contig1259.15.1 ID=mRNA_H-akashiwo_Contig1259.15.1|Name=mRNA_H-akashiwo_Contig1259.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=198bp|location=Sequence derived from alignment at H-akashiwo_Contig1259:173591..174102- (Heterosigma akashiwo CCMP452)
ATGTATATATATATACACATCAAACCTCAGGTTGGTAGAGTTTGTCTTGC
CAGCTGTCAATGTGTCTGCTCTCCGATTGTTCCGTATATTGAGGCCTCTC
AAGACCCTTTCCAAGATTCCTGGCCTGCGGACCATCATCAGTGCGCTTCT
GAACTCCGTCGCGATGATGGGCAACATTGTCTTCCTGCTGTTCTTCGC
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