mRNA_H-akashiwo_Contig1259.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig1259.13.1
Unique Name	mRNA_H-akashiwo_Contig1259.13.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

[Close]

BLAST of mRNA_H-akashiwo_Contig1259.13.1 vs. uniprot
Match: A0A7S4DBN8_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBN8_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 3.050e-18
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1

Query:   10 SMNKFDAFIVVTSLIELIMAETSDASSGGLSXXXXXXXXXXXXLAKNWRDLQVLLQTAL 186
            SMNKFDAFIVVTSLIELIMAETSDASSGGLSXXXXXXXXXXXXLAKNWRDLQVLLQTAL
Sbjct:    1 SMNKFDAFIVVTSLIELIMAETSDASSGGLSXXXXXXXXXXXXLAKNWRDLQVLLQTAL 59

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig1259.13.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig1259.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A7S4DBN8_HETAK	3.050e-18	100.00	Hypothetical protein (Fragment) n=3 Tax=Heterosigm...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig1259	contig	H-akashiwo_Contig1259:170082..171628 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	81824.XP_001743090.1
Preferred name	SCN4A
PFAMs	GPHH,IQ,Ion_trans,Na_trans_assoc,Na_trans_cytopl
Model size	188
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K04833,ko:K04834,ko:K04836,ko:K04837,ko:K04838,ko:K04840,ko:K04841,ko:K04842,ko:K21862
KEGG TC	1.A.1.10.1,1.A.1.10.12,1.A.1.10.13,1.A.1.10.3,1.A.1.10.4,1.A.1.10.5,1.A.1.10.6,1.A.1.10.7,1.A.1.10.8
KEGG Pathway	ko04261,ko04728,ko04742,map04261,map04728,map04742
Hectar predicted targeting category	signal peptide
GOs	GO:0000003,GO:0001508,GO:0001518,GO:0001666,GO:0002027,GO:0002028,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003231,GO:0003254,GO:0003360,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005248,GO:0005261,GO:0005272,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0005901,GO:0005911,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006836,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006950,GO:0006952,GO:0006954,GO:0007154,GO:0007267,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007422,GO:0007507,GO:0007517,GO:0007600,GO:0007605,GO:0007610,GO:0007617,GO:0007618,GO:0007619,GO:0007626,GO:0007628,GO:0007635,GO:0007638,GO:0008015,GO:0008016,GO:0008049,GO:0008092,GO:0008150,GO:0008284,GO:0008324,GO:0008344,GO:0008366,GO:0009581,GO:0009582,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009636,GO:0009653,GO:0009791,GO:0009887,GO:0009986,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010460,GO:0010646,GO:0010765,GO:0010959,GO:0012505,GO:0014070,GO:0014704,GO:0014854,GO:0014870,GO:0014874,GO:0014877,GO:0014894,GO:0015075,GO:0015077,GO:0015081,GO:0015267,GO:0015318,GO:0015672,GO:0015695,GO:0015696,GO:0015871,GO:0016020,GO:0016021,GO:0016328,GO:0016545,GO:0016604,GO:0017085,GO:0017134,GO:0019098,GO:0019226,GO:0019227,GO:0019228,GO:0019233,GO:0019838,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021537,GO:0021549,GO:0022037,GO:0022414,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0030001,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030275,GO:0030315,GO:0030424,GO:0030425,GO:0030506,GO:0030534,GO:0030900,GO:0030902,GO:0031224,GO:0031226,GO:0031402,GO:0031420,GO:0031625,GO:0031674,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032970,GO:0032991,GO:0033267,GO:0033268,GO:0033555,GO:0034220,GO:0034702,GO:0034703,GO:0034706,GO:0034762,GO:0034765,GO:0035637,GO:0035725,GO:0036293,GO:0036477,GO:0042048,GO:0042127,GO:0042221,GO:0042383,GO:0042391,GO:0042475,GO:0042476,GO:0042552,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043169,GO:0043179,GO:0043194,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043269,GO:0043270,GO:0043292,GO:0043502,GO:0043522,GO:0044057,GO:0044291,GO:0044297,GO:0044304,GO:0044325,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0045121,GO:0045433,GO:0045760,GO:0045823,GO:0046677,GO:0046684,GO:0046872,GO:0046873,GO:0048065,GO:0048265,GO:0048266,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048609,GO:0048731,GO:0048856,GO:0048878,GO:0050678,GO:0050679,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050877,GO:0050884,GO:0050896,GO:0050905,GO:0050906,GO:0050954,GO:0050966,GO:0050974,GO:0050982,GO:0050998,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051270,GO:0051592,GO:0051606,GO:0051704,GO:0051716,GO:0051899,GO:0055065,GO:0055074,GO:0055080,GO:0055085,GO:0055117,GO:0060024,GO:0060047,GO:0060048,GO:0060078,GO:0060179,GO:0060306,GO:0060307,GO:0060322,GO:0060371,GO:0060372,GO:0060373,GO:0061061,GO:0061337,GO:0065007,GO:0065008,GO:0070013,GO:0070252,GO:0070482,GO:0070887,GO:0071236,GO:0071241,GO:0071248,GO:0071277,GO:0071702,GO:0071705,GO:0071944,GO:0072359,GO:0072507,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086006,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086016,GO:0086017,GO:0086018,GO:0086019,GO:0086026,GO:0086027,GO:0086028,GO:0086029,GO:0086043,GO:0086045,GO:0086046,GO:0086047,GO:0086048,GO:0086060,GO:0086061,GO:0086062,GO:0086063,GO:0086065,GO:0086066,GO:0086067,GO:0086068,GO:0086069,GO:0086070,GO:0086091,GO:0090257,GO:0090659,GO:0097110,GO:0097447,GO:0097458,GO:0098589,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098857,GO:0098870,GO:0098900,GO:0098912,GO:0099080,GO:0099081,GO:0099177,GO:0099512,GO:0099623,GO:0120025,GO:0120038,GO:1902305,GO:1902495,GO:1903115,GO:1903522,GO:1903524,GO:1904062,GO:1990351
Exons	2
Evalue	0.000142
EggNOG OGs	KOG2301@1\|root,KOG2301@2759\|Eukaryota,38BYK@33154\|Opisthokonta
Description	membrane depolarization during action potential
Cds size	174
COG category	P
BRITE	ko00000,ko00001,ko02000,ko04040

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387135.348927-CDS-H-akashiwo_Contig1259:170081..170121	1681387135.348927-CDS-H-akashiwo_Contig1259:170081..170121	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1259 170082..170121 -
1681387135.379347-CDS-H-akashiwo_Contig1259:171482..171616	1681387135.379347-CDS-H-akashiwo_Contig1259:171482..171616	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig1259 171483..171616 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387135.3893228-UTR-H-akashiwo_Contig1259:171616..171628	1681387135.3893228-UTR-H-akashiwo_Contig1259:171616..171628	Heterosigma akashiwo CCMP452	UTR	H-akashiwo_Contig1259 171617..171628 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig1259.13.1	prot_H-akashiwo_Contig1259.13.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig1259 170082..171616 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig1259:170082..171628-
coding sequence from alignment at H-akashiwo_Contig1259:170082..171628-

protein sequence of mRNA_H-akashiwo_Contig1259.13.1

>prot_H-akashiwo_Contig1259.13.1 ID=prot_H-akashiwo_Contig1259.13.1|Name=mRNA_H-akashiwo_Contig1259.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=58bp
MNKFDAFIVVTSLIELIMAETSDASSGGLSALRTFRLFRVFKLAKNWRDL
QVLLQTAL

mRNA from alignment at H-akashiwo_Contig1259:170082..171628-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig1259.13.1 ID=mRNA_H-akashiwo_Contig1259.13.1|Name=mRNA_H-akashiwo_Contig1259.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1547bp|location=Sequence derived from alignment at H-akashiwo_Contig1259:170082..171628- (Heterosigma akashiwo CCMP452)
TTCCGCCACTCGATGAACAAGTTCGACGCCTTCATCGTCGTCACCTCCCT
GATCGAGCTGATCATGGCGGAGACCTCCGACGCCTCCTCGGGCGGCCTCA
GCGCCCTGCGGACCTTCCGCCTCTTCCGCGTCTTCAAGCTCGCCAAGTAC
GTCCCATCTAGAGTCTATATATATAACAGTGGTACTTGAATATACCCCCG
CCCCCCTCCCACACCACCACCCCAACCCGCCCGGGCCCAGCCTCTATTGA
AGAAGAAGAGGGTTGTGCATGAGGGTTTTATATGACTATACTTCTGCCTT
AGCCGAAAATGTTGCGGCTGGACTGTTTTTCCTTGCCTCCTCCTTCAGTG
AGGAGATGGGGTAGAGAAGCCGAAACCATAAGGGATGCTGGTGGTGAATC
TGCTTTGCTGAGCATGTGCCACAAACCTGGTGGGGGCAGAAGGGCTTTGC
TTGGCCAACATGAGGATATCAAAGAAGCTGTTCAGAGCTACGGCCAAGAG
CTGGCTTGCATCCAAGGGGTTCGGACTTCAAGGCCGCCTGCAATTGGCTG
GAAAGGTTCATGAAAAAAGCACAATCTGGTGATGCGCAAGACCGGGACCC
TTGCCGAGATTGAAGAGGAGGAGGGGGGGGGCAAGCGTGTACTTTCTCAC
GAAGTGTTCATCGACACCAGAGAGTGGTGAAAGGAGTGAGACACGGCGAA
CGCCTCTTTGTCCGTGCGACGACAATCTACCTTGGGCACCACCGTCGCCA
GACCACCATTGATGTCTGTGGTGTTGCTACTGTCCCAATCGACGCCAGTG
GGTATGGCTCCACAAGAATGACTTGCATTCCTGTTGAGCAGTGGGTATGA
CTCCACAAGAATGACTTGCATTCCTGTTGAGTAATATCCTTTGGCGTTGA
TGGATGGGGACAGTAGCAACACCCCAGACATCAATGGTGGTCTGGCGACG
GTTATGCTCAAGGAAGATGAACGTTGCATGGAGAAAGAGGCATTGGCCGT
CTCTTACTCCTTTCTACCTCTCTCTGATGTCGATGAACCCCCTCCTCGTC
AATCTTGGCAAGGGTCCTAGTCTTGCGCAGCACCAGACTGTGCTTTTTCA
TGAACCTTTTCAGCCAATTGCAGGCAGCCTTGAAGTCCGGAACCCCTTGG
ATGCGAGCCAGCTCTCGGCCTTAGCTGTGAACAGCTTCTCTGTTCATAAT
GAGCACGGTTGTGCAGGATCCAAAGTGATGTCCTCACACTGGCCGAGCAA
AGTCCTTCTGCCTCCACCAGGTTTGTGTGCGCCCCTGCTCCGTAAAGCAT
TGTTACTATACCAGCATCCCTGGTGTTTTCGGCTTCTCTTACCCATCCCA
TCCCCCATCCGACCCATTCTGCCGCGCACACAAGACCTTAACACGCTAAA
TACTCAGACACACACCCAGCCAGGAGAGCGGCAGGGCCCGGCCCGCTCAG
TTCGCCCCCCGCCCCCTGCCCCCCGCCGCCGCCGCCGCCGCCGCCGCTGC
CCCGCAGGAACTGGCGGGACCTGCAGGTGCTGCTGCAGACGGCGCTG

Coding sequence (CDS) from alignment at H-akashiwo_Contig1259:170082..171628-

>mRNA_H-akashiwo_Contig1259.13.1 ID=mRNA_H-akashiwo_Contig1259.13.1|Name=mRNA_H-akashiwo_Contig1259.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=174bp|location=Sequence derived from alignment at H-akashiwo_Contig1259:170082..171628- (Heterosigma akashiwo CCMP452)
ATGAACAAGTTCGACGCCTTCATCGTCGTCACCTCCCTGATCGAGCTGAT
CATGGCGGAGACCTCCGACGCCTCCTCGGGCGGCCTCAGCGCCCTGCGGA
CCTTCCGCCTCTTCCGCGTCTTCAAGCTCGCCAAGAACTGGCGGGACCTG
CAGGTGCTGCTGCAGACGGCGCTG