mRNA_H-akashiwo_Contig1255.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1255.3.1
Unique NamemRNA_H-akashiwo_Contig1255.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1255.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1255contigH-akashiwo_Contig1255:84340..91000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387134.5249047-CDS-H-akashiwo_Contig1255:84339..844021681387134.5249047-CDS-H-akashiwo_Contig1255:84339..84402Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1255 84340..84402 -
1681387134.5354695-CDS-H-akashiwo_Contig1255:90903..909961681387134.5354695-CDS-H-akashiwo_Contig1255:90903..90996Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1255 90904..90996 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387134.5500429-UTR-H-akashiwo_Contig1255:90996..910001681387134.5500429-UTR-H-akashiwo_Contig1255:90996..91000Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1255 90997..91000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1255.3.1prot_H-akashiwo_Contig1255.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1255 84340..90996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1255.3.1

>prot_H-akashiwo_Contig1255.3.1 ID=prot_H-akashiwo_Contig1255.3.1|Name=mRNA_H-akashiwo_Contig1255.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MLNNSKSGGAMEYINFRSGKFGEERPWDRIEAFFRGEVEEMSRLGSIAAN
PS
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mRNA from alignment at H-akashiwo_Contig1255:84340..91000-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1255.3.1 ID=mRNA_H-akashiwo_Contig1255.3.1|Name=mRNA_H-akashiwo_Contig1255.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6661bp|location=Sequence derived from alignment at H-akashiwo_Contig1255:84340..91000- (Heterosigma akashiwo CCMP452)
GCTGATGCTAAACAATTCAAAGAGTGGAGGAGCAATGGAATACATTAACT
TTCGCAGCGGGAAGTTTGGAGAAGAGCGTCCTTGGGACCGCATTGAGGTA
TGTCCATGACGAACAGCAGCTGTATGTGTCCAGCTCTTCCATGACCATGT
ATTTCTATAATATATAATATGTTGGAGACGGAGATTATGCGTTGGCGGCG
GTAGGGGAATCTAACCGTGGATTTTAAGAGGGGCGGAGATACGTTGGTAT
AGCTGATTGGATTTCAGTGAATATTTGTTCTCTTGTGTACTTGACATGTG
AGCAGTGGTGGTATTGCAGGAAGTGGTATAGTGAAGTGGAAGGGTCCGCG
TATAGAAGCTAGGTGCTCAGCCCCGAAAGCGATTTGAACAGCTAGACCTT
AAACTAAATTTAATATCATTATTGTACAAACATCATCATCGTCAACTCTG
CAGGTCATTCATCATCATATCTCTAATATATTATTATTTGTTTCGCGAGC
ACATGAGATGATGACCGACGAAGTAGGCGCTGCCGCAGGCCGCAGCGCGG
AACTCTCTCCGGAGGTTGATTGGAGTGAAATAAGAAGAGTAGGAACCATT
GTTGGTGGTATACATACAAATATGGATGGTACGGCAAACTGGTAGGCAGT
GTTTGCCAGTGGCCAATAATAGAGAACTTTATTGCTGAGGTGTTGGATTT
AAACAGTGAGGCCGCTTCCATCATCAGTGAGTATAGCTCTACATTGCCAA
AGAGGCGACATATCAAAGGTTTTTAAATCATTACAAGATCTGATGTGGAC
AGCGTTGTTTCTGGTATACCACCAGCCGAGGCCGGTGGCTGGCCTTCGCC
AACACGCCTTGTCAGTAAGATTAAACCAAATGAAGATGGGTAGTAGGTGA
GAAGAAGTGGGATTTTAAGTTAAATTGCCACACGCCGGAACTGACGCTTC
ATGGTTTTGAAGTTCAATGAAACGCCCTAGGTTCATTTTTCTACTTTCAC
TTTATTTTATTATTCCAAACTGAATGCAATTTTAACCTATTTTGAGTTTA
AATAGGTCGTCAACCTCTGTTCGCCCTGCATCCATCACATCATGCGAGGT
TACTCAAGTGGTTGTTGGACAAACCGAATCCAACCGTCAAAAGGAGAAAG
GCCGACCTCAAAACTATCGACAAAGGAGTTGAGTACGAGTGTAACAAGTG
ATTAATTTAAATTACTTAGATACAGTTGAGCTTTTATACAGAGTTGAACC
ATTATGTTCTAAATTGATTTTGAGAGAATCGTGATTTGGGTTTGTTTTGC
TGAAATCCGAGCGTATCTACTACTCCAGACTAGAGGTTTCCTTTCGAAGT
CCTCTTCATGTACCATAAGAATTATTCCGAGATTCGTATCTGAATGGGAA
CATCAAACCGAGAGTTAAAAACTAACATAAGATTCTGCAATGATGTGTCT
GGTTGTGTTATGTAGTCAATCAGAAGAAGTATTTATAGATAGCCAATGGG
TGGGAAGAATAAGTAGTGGCGAATTATCTTCTACCCATCAGAAGCAGCAG
CAGCAGCTCGGATATCTTGATGTAGTATAGTATGAGGTCTACCGGCATTA
TTGACGGCAGCAGCAACAATGACTTTGTGCTAACTTTTCTAAAATGAGTA
CAACTTAGCTTCACCAGTACTGCTATACTACATACCACGTAGTACCAACT
GTACCACTTTCCCCCAGCACCTTCAGAACAGTTAATCTTCTCAATCCAAA
ATGATGAAGCAGAGGCTACAGGCTTGAATTAGATTTATTCCGGTAAATGC
ATCAATAGAAGAAATATACCACTCTAATCAGATTTGGAACTGAAACTGTT
CCCCTGTCTCAATATCAATGTTTTATGCATATCAATGTTTCATGTACTTG
AGCCATGCGCTTTGTTGGCTTAACGAACAAACGTCTATGGCTCGCCCTTT
GGACGGAATCGGCTGGTCAAACCAGCATGGGAGAAAGTTCACATACCCAG
CATAGACATAGCATGGGTTGGCTAGCTTAGTTTACCTATTGATCCCCCGA
CTTTGTCGAACTGCTCTCCATCGCCGATATCAATTGAAATCGAACAAGAC
TCCTTCGTCGTCGTTGAAACAACTCCACAACATGAGTTTCAACGACGATT
GATGCGACAGAAGGAGAAGGAGCAGCAGCAGCAGAGGACTAGATACTAGA
AGTGAGAAGGAGGAGGAGGAGGTGGTGGTGGTGGGATTTATTGGGGAATT
TTTTCACTGAAATGCGGGTTTTCGGGATTTTTTTTTTTAACCTTCACCTT
CGTTTTAAAATTTCGAATGCTCGCTAAATTTCGGGCGTCAGGAGATATGA
AAAAAAGGTGCCTTTTTTCGCGAAAATTTGTAATTTGAAAATTTCCGACC
GAGAAAGTTCAACCCCTTCAGCGTTTTTTTTTTCCCCATCTATGCTGAGC
TCAATCTTGGCTTGGAAGAAATAGAAGAGCCAGAAAAAGTAATAAAAATG
TTAACCATTTAATTCCCTCTGGAATAAAAATTAGTTTCTGTAATTCCGCA
AATGTTATTAGTCAATAGCTCAAAATGCGCTGAAGACTATTTTTCAAAAT
TTTTGATCCATTGACCTATGAAAGCGAAATTATACATGTATATATTTTTT
GCCATGTTTTGTTTTCCCAGCAGCACAAAAAGAAAATGTTTTTGCAAGCC
GCAAAATAACCGAACCCGCAACGACACTCCCAGAGACGAAAAAAAGAAGA
TCAGAAAAGCTCTGGGAAAGAAGAAGAAGAAGACATCAGCCTTGTGTTTG
ATTTCCTTTGTAGTATTTTGCGACGGAATGATTTTAGAGCACCACCGATT
GCTGCGTGATCGGCGATCGTTATCGTGCCATTTTTTGGCACCACCATGAA
GTCAATGACCTTCCTATTCTGTCTGTAACCTGAAATCAATCTTCAGAATG
CCTAACTTATGTACACACATTTTTGTTTTAGCTTCAATAAGCTTATTTTG
ATTCATTTTGTGCCAAGTCTGGAGAAAATCAACATTTTTGTATTAGCGAA
TCCCGGCATCCAAGCACCCCCCTTGATCCTGATGGTCACTGGGAAGGATT
TACACTGAATTGTTGATTTGCTTTATACAATCACCTAAAAATCCGGAAGA
TGGTTCAAAAGGTGTCGAAACTCCGGTCAATTTCTTGTCTTCTTATACAA
TATTAACGTGTTCCACTTTGGATCTGGCACCGTCCGCTCACACAGCAATC
ACAGTGCAGTGATCTATAGGTCCTTGACTTACCAGTCACAGGTACCGACC
GGGTTAGAGCCCGTTGACAACCATCCTGGTTGGCAACACTGGCCTTTCTT
CTACTTCTTCTACACTCAAAGAAGAAGAAATTGCAGCTCTCTTCTGGTTG
GTTGTAGGCACAAGCATGGAGCGTGCCATGTCATGAGTCAGCATGATGGA
GAGGCGATCACACAAGAAGAAGGAGCAAGCATGATCATCAGCAGCACTAA
GAAGCACTACTGTTGTTCTTAAATAGTTCTTGTTGTTTCAGGAGCGCAAA
GGAGTCTTGCACATCTTTCTATATATATTAACATTCAATTTATCCAGATT
TTGATACGATACTATTTGACAAAGGCTTGCCTTCCCATCATAGGCCGCTT
GATCTCTTGTTATGGCATTGTACCACTAGTCCACTTCTAGTCTTACTCTA
ATCTACACAAAGTTCCATATAATTAAAGACCGAGGGTATAACCTTTTTCC
AGCGCCTTCTCACCTTTAAGTCACCCACCCGTCCTTTTTGCCTGGAGCCA
CCTCTCTGCGCTCATCCCTTGATCCCTCCCAAGAGCCTTCTTCTCCACCG
CCTTCTCTTCACTATGGCCCATTTCATCTTCACTACTCGACGACTCCAAC
GACAAAAGCTGAGGCGACAAAGGAGAAGATCCCTCCGTCCCCATCGTTGC
CACCGAAGCTACCCTCGGTGCTACTACTTCCTGAAAAGTCCACAGACCAT
GGCCATGGCAAGCAGTCCAACATTTTGAAGTGTGCAAGAAGCACTAAGCG
CGTGCGCGATCACCGACGGTGCATGTGTATGAACAGCTGGAATCTCTCCA
TCTTCCTCCGTTTGCTTCCCAGCTCCTCCTGCCACCCTTATTGGAGACAT
TACCCCTTCTGGCTCCCTGAATCAGCGCCCCTTCCGGTGGTGTTGGCTCC
TCCCCGCTTCCGGATATTTTCCGCTTTTCCTGGCTCCTGCTCCCGCCAAT
GGAAAGCCCCTCCGATTCTTCCTGTGTTCCCTCCCCCTCTGTGAATTCCA
TGTTTGTAAAATGACTGTTTCTCCCCTGCTAATAGTCGAAGAGAGCTCGT
CATGACTTACACCCTCAACGTCACAATGAGCGTCCTCTTGCAACCGCGTT
CCCCCCCCTTCTTGCTGGCTCTGCTGCTGCTGTTTCCCATCACCTCCACC
CTCCTGCTGCTGTTGTGCCGCCTCTTCAACCCCACCACCAACAGCAGCAG
CAGCTCTCGGGTCGTGCCGGCTCGTCGACGGTGCATCAGTAGCAGGATTT
GAAGAGCGTCTTGACCCTGGATTCAAACTTGCTCTCAGCCAGCGTGGCCT
CCAACAAGACCCTCTGCCCCTATGTATGCGCTCGTTGTTGCGTCCTCCAG
CTTCAGTACTCCCTGGTGTCGTTGTGACATCCTCAGAACGTGCAGGGCCA
GAGCGGTCTGTCTCTCGATGCGTCCGCGTGCTATCCATGCCCGAAACATG
AAATGCCCCCCAGCCCGCGTGCCCAAAAGACCGTAAAACCCTCCACGCCG
TCTTTGAGCATGCACGAGGTCAAGTGAAGAGTGACTGCTTGATAGTGGTA
GTACCATGTAACGGCGAGGAGTGGTAGCTCAATCTGGTCGTATGAGAAGG
ATTCATCATCATCGTGAGGCAGTGGAGGAGTGGTAGCTCAATCGGTTGAG
CGCAGCGCTTTGACGCACACGTCTCTGCCCGCCCGGGTTCAAATCCCACT
ACCGTCGAGTTCAAAACGCACCGGTGCGTTCTGAAACATACCGGTGCATT
GTGAAACGCACGGTGCATTCCATATGAGACACACCGGTGTGTTCTGAAAT
GCACCGTGCGTCTTGACATGCATCCTGTGCAGAACGCACCGGTGTTTCCT
AGAAATTTGGGTGGGGATTTCCAACTTGCGCCCCCCTGAAAACTGCTCAA
GTTGATATCCCCACCTCAATCCAGCCCCTCCCCCACTACCACTTTTTTTT
TTTTCAATCCATGTAACACTTGTGTCAAGCACCCAAGTGCATGGCTAATT
CAAACTATTGCTCAGTAGTCAGTGCTCGAATGTGCACACTTGCAGATGAG
GGCACTCGCGTCCCTGCGCATCATGCTGGCACCGTACCCTAGCCGAGTTA
CGAATCCTGTGTGTTCGTTTTTTTTTTGTACAGTCTACATTAATGTCAAA
GAAGAAGGAAAAATGATTGAATCCTGTGTATGTTTACACACGCTAGCCCT
AACGTGCCATGCTGGCACTTCCCCACCTCATGTGCTGCACAGATGTGTAC
TTCCCTGGATTGCGGCCCGTTAACAGGACCTTTCTTCTAAGCATAGTATT
GATTGTTACTTCTAAAATTCTTAAAAAGACATGGGAATATATGTATAGAG
TACTTTGTTTTGTTGAGAGTGGCCTCTAGTGAAGGACTAGTGGTACAATG
CCATGACAAGAGGCCAGCGGCCTATGATTGGGAAGGCAAGCCTTCGGTCA
AACATTGTCGTATTCTAAAGTTGTATGAAAGTGAATGATGCAGCGGCTTC
TGCTGCTTCTTAAAACAACAACAACAATGATAACCAACAGTAGTACTTCA
TGTTCTGCTGATGACATAGCTCCTTCTTGTCTTCATCGCCACGGCGCGCA
CTCCATGCTTGTGTCTACAACCAATCAGAAGAGAGCTGCGACTTCTTCTT
CTCTTGAAGCTAGAAGAAGTAGAAGAAGGCCGGTGTTGCCAACCAGGATG
GTCGTCAATGGGGATCGAACCTGGGGCCTGTAGCTAGCAAGTCAGGGACT
TACTCTACTGAACTGTATGGCTGTGTGAACTGGACGATGCCACAAACAAC
GGAGTATGTGTACAGTATGTATTCCTTTTCGGAAGCACTACGATAGTAGA
GACGACGGTACGGACCAATACCTATATTTCTCTATGCAAGTGGTATGCCG
TCGCCAAATCAAAGAAGATATTTTGGGGGGGCATGATATTTCTCTACAAC
AACTTGTCGCCGTGGAAGAATACATACCAATAGTTTTGTAATTTAAATTC
TGACATTGCTGTCAGGCCGCCAGCAGTCCAGTTGGTGAGTGTGCCATATA
ATGGCAAGCGGTCCCGGGTTCGAATCCGGGTAGGGTCCGTTATCTCCGTC
GTGCATTTTAAGCCGAACAGTCTTGCACCGCTTCTGTTTAATATGATGAT
GATGATGTCAAATCTAGTTTATCAAGGTCTGGTTTTAAATATACTCACAC
AGGGGTCTGAGTATTACATATGTGTATATATGGCAGAAAAGCTAACATCA
CTCCTCAGCTGAAATGCCTTTTTTTATTGTTGTCATAAATATTGCCAGGC
TTTTTTTCGTGGTGAAGTTGAGGAGATGAGTCGTCTGGGCTCCATCGCTG
CTAACCCATCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1255:84340..91000-

>mRNA_H-akashiwo_Contig1255.3.1 ID=mRNA_H-akashiwo_Contig1255.3.1|Name=mRNA_H-akashiwo_Contig1255.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1255:84340..91000- (Heterosigma akashiwo CCMP452)
ATGCTAAACAATTCAAAGAGTGGAGGAGCAATGGAATACATTAACTTTCG
CAGCGGGAAGTTTGGAGAAGAGCGTCCTTGGGACCGCATTGAGGCTTTTT
TTCGTGGTGAAGTTGAGGAGATGAGTCGTCTGGGCTCCATCGCTGCTAAC
CCATCA
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