mRNA_H-akashiwo_Contig1253.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1253.4.1
Unique NamemRNA_H-akashiwo_Contig1253.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1253.4.1 vs. uniprot
Match: A0A7S3Y339_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y339_HETAK)

HSP 1 Score: 92.0 bits (227), Expect = 4.620e-23
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 KLKSSLTGNIYTPWHAQPGFLTSHLAVSQSVERVLQLIDPSIALP 135
            KLKSSLTGNIYTPWHA+PGFLTSHLAVSQSVERVLQLIDPSIALP
Sbjct:   28 KLKSSLTGNIYTPWHAKPGFLTSHLAVSQSVERVLQLIDPSIALP 72
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BLAST of mRNA_H-akashiwo_Contig1253.4.1 vs. uniprot
Match: A0A6V1WW05_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WW05_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   22 GNIYTPWHAQPGFLTSHLAVSQSVERVLQLIDPSIALP 135
            GN  TP+H  PGFLT H  + +  E+VLQLIDPSIA+P
Sbjct:  253 GNPCTPFHGGPGFLTGHWGMVRMTEKVLQLIDPSIAMP 290
[Close]
BLAST of mRNA_H-akashiwo_Contig1253.4.1 vs. uniprot
Match: A0A6V1TY89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TY89_HETAK)

HSP 1 Score: 48.9 bits (115), Expect = 2.100e-5
Identity = 20/38 (52.63%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   22 GNIYTPWHAQPGFLTSHLAVSQSVERVLQLIDPSIALP 135
            G++ +PWH   GF T H  + +  E+VLQLIDPSIA+P
Sbjct:  100 GDVCSPWHKGMGFFTGHWGMVRMAEKVLQLIDPSIAMP 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1253.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3Y339_HETAK4.620e-2397.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1WW05_HETAK2.330e-660.53Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TY89_HETAK2.100e-552.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1253contigH-akashiwo_Contig1253:168037..168171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387134.4595582-CDS-H-akashiwo_Contig1253:168036..1681711681387134.4595582-CDS-H-akashiwo_Contig1253:168036..168171Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1253 168037..168171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1253.4.1prot_H-akashiwo_Contig1253.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1253 168037..168171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1253.4.1

>prot_H-akashiwo_Contig1253.4.1 ID=prot_H-akashiwo_Contig1253.4.1|Name=mRNA_H-akashiwo_Contig1253.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=45bp
KLKSSLTGNIYTPWHAQPGFLTSHLAVSQSVERVLQLIDPSIALP
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mRNA from alignment at H-akashiwo_Contig1253:168037..168171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1253.4.1 ID=mRNA_H-akashiwo_Contig1253.4.1|Name=mRNA_H-akashiwo_Contig1253.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=135bp|location=Sequence derived from alignment at H-akashiwo_Contig1253:168037..168171+ (Heterosigma akashiwo CCMP452)
AAACTCAAATCATCGTTGACGGGGAACATCTACACCCCCTGGCACGCCCA
GCCGGGGTTCCTCACCAGTCACCTCGCTGTCTCGCAGTCCGTGGAGCGTG
TGCTGCAGCTGATCGACCCGTCCATTGCGCTGCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1253:168037..168171+

>mRNA_H-akashiwo_Contig1253.4.1 ID=mRNA_H-akashiwo_Contig1253.4.1|Name=mRNA_H-akashiwo_Contig1253.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=135bp|location=Sequence derived from alignment at H-akashiwo_Contig1253:168037..168171+ (Heterosigma akashiwo CCMP452)
AAACTCAAATCATCGTTGACGGGGAACATCTACACCCCCTGGCACGCCCA
GCCGGGGTTCCTCACCAGTCACCTCGCTGTCTCGCAGTCCGTGGAGCGTG
TGCTGCAGCTGATCGACCCGTCCATTGCGCTGCCC
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