mRNA_H-akashiwo_Contig1253.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1253.2.1
Unique NamemRNA_H-akashiwo_Contig1253.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A8K1FQJ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FQJ6_PYTOL)

HSP 1 Score: 127 bits (319), Expect = 2.960e-34
Identity = 74/150 (49.33%), Postives = 98/150 (65.33%), Query Frame = 1
Query:   13 YQSFLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEH--FLGRIH---HNFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            Y+S+LI + V K  NIK ++ +AS FG   VFV   K +  L EH  FL ++       A L++  AY +E+ Q  I G+EIM+ A N+   PF   +AFIMG+EG GM+  Q ++CD F+YI QYGGGTASLNV VA+SIIMQ FA+WA
Sbjct:   15 YKSYLIVNNVQKNKNIKNMLISASSFGISEVFVVGQKKFD-LDEHRVFLDKLRCPITRIASLKECRAYCQER-QIRIIGVEIMEGAQNILDAPFQGDTAFIMGNEGSGMNAAQVAICDGFVYIPQYGGGTASLNVTVAASIIMQSFALWA 162          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A1Y1HUT9_KLENI (SpoU_methylase domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HUT9_KLENI)

HSP 1 Score: 128 bits (321), Expect = 8.060e-34
Identity = 71/152 (46.71%), Postives = 94/152 (61.84%), Query Frame = 1
Query:    1 GLPSYQSFLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHFLGR---IHHNFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            G  S +S+L+ H V+K  NI TL  + + FG   V +     Y+    H       I H F +LEDA  YLKE  Q  I G+EI++ A  V   PF  ++AFI+G+EG G+S+KQ  +CD F+YISQYG GTASLNV VA+SI++  FAVWA
Sbjct:   24 GTSSPKSYLLVHNVSKKHNIGTLSRSCTAFGVTQVCIVGQNAYNTFGSHGAAEYVDIRH-FWKLEDAAKYLKEDCQCDIVGVEIVEGALAVHKRPFKRNTAFILGNEGTGLSQKQIEICDYFVYISQYGPGTASLNVTVAASIVLHAFAVWA 174          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A0K9PY49_ZOSMR (RNA methyltransferase, TrmH family protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PY49_ZOSMR)

HSP 1 Score: 125 bits (313), Expect = 8.050e-33
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 1
Query:   16 QSFLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHFLGRIHH----NFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            +S +I H V K  N+ TL  +A+ FG   + +   + ++    H  G   H    +F  L DA  YLKE+    I G+EI D A ++E  PF   +AF++G+EG G+SEK+ +MCD F+YISQYGGGTASLNV VA+SI++ +F VWA
Sbjct:    9 ESLVIVHNVAKRHNVGTLARSATAFGVTEMILIGKRDFNSFGSH--GSTSHLRFRHFHSLSDARHYLKEERDCDICGVEIADGAVSIEKHPFRKSTAFLLGNEGSGLSEKEYAMCDFFVYISQYGGGTASLNVTVAASIVLHQFGVWA 154          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A7S1C439_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C439_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.380e-32
Identity = 70/146 (47.95%), Postives = 98/146 (67.12%), Query Frame = 1
Query:   22 FLITHGVTKAANIKTLIETASIFGCQ-VVFVGAPKIYSKLPEHFLGRIHHNF---ARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            +++   V+K  NI  L+ +AS FG   ++ VG+PK +S    H  GR H NF   A+LEDA A L+E+   ++ G+EIM  A  V   PFT   AF++G+EG G+S +QKS+CD F+YI+QYGGGTASLNV VA+SI++  F +WA
Sbjct:   58 YVLLSNVSKKQNIGNLVRSASAFGASGILVVGSPK-FSLFGSHGSGR-HINFEKHAKLEDAAASLRERG-VSVVGVEIMPGARPVHEHPFTGSCAFMLGNEGTGLSARQKSVCDAFVYIAQYGGGTASLNVTVAASIVLHHFGLWA 200          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A4RR86_OSTLU (SpoU_methylase domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RR86_OSTLU)

HSP 1 Score: 121 bits (304), Expect = 1.190e-31
Identity = 66/153 (43.14%), Postives = 97/153 (63.40%), Query Frame = 1
Query:   22 FLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHFL-GRIH-HNFARLEDAVAYLKEQWQAT-IYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWAQQQKKKEE 471
            + + H V K  NI T+    + FG + + +   + ++    H   G +H  +F  LE+A   LK +   T I G+EI+D+A  +E  PFT ++AFIMG+EGHGM+E QK++CD F+YI QYG GTASLNV+VA+SI+M  FA WA  +++  E
Sbjct:    2 YFLAHNVAKKHNIGTMARCCTAFGVKSLVLIGSRQFNTFGSHGADGHVHFEHFDSLEEAREKLKGERGCTQILGVEIVDDARAIESHPFTGNTAFIMGNEGHGMTEAQKAICDGFVYIPQYGPGTASLNVSVAASIVMHHFASWAGYEERSRE 154          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: G5A0Y2_PHYSP (SpoU_methylase domain-containing protein (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=G5A0Y2_PHYSP)

HSP 1 Score: 119 bits (297), Expect = 2.960e-31
Identity = 70/146 (47.95%), Postives = 93/146 (63.70%), Query Frame = 1
Query:   22 FLITHGVTKAANIKTLIETASIFGCQVVFV-GAPKIYSKLPEHFLGRIHHNFARL---EDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            FLI + V K  NIK ++ +AS FG + VFV G  K   +  E FL  +     RL   +D  A+  E+    I G+EIM +A ++   PF+  +AFIMG+EG GMS  Q ++CD F+YI QYGGGTASLNV VA+SII+Q FA+WA
Sbjct:    4 FLILNNVQKNKNIKNMLVSASAFGVEEVFVVGQKKFDLQEQEPFLRSLSCRVTRLATLKDCRAHCTERG-IRIVGVEIMHDAKSIADQPFSGDTAFIMGNEGSGMSSAQVAICDDFVYIPQYGGGTASLNVTVAASIILQSFALWA 148          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A8J4BLB6_9CHLO (SpoU_methylase domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BLB6_9CHLO)

HSP 1 Score: 120 bits (300), Expect = 6.980e-31
Identity = 66/161 (40.99%), Postives = 100/161 (62.11%), Query Frame = 1
Query:    1 GLPSYQSFLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHFLGRIHH----NFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWAQQQKKKEE 471
            G P    F+ITH V+K  NI T++ +A+ FG + V +   + ++    H  G   H    +F  L+  V +LK   +  + GIEI + A  V+  PFT  +AF++G+EG G+SE+Q ++CD F+YI Q+G GTASLNVAVA+SI++  FAVWA   +++ E
Sbjct:   15 GNPCPPCFIITHSVSKRHNIGTILRSATAFGVKEVCLVGSRQFNTFGSH--GSDAHVALKHFHTLQHCVQHLKNVERCRVLGIEICEGALPVQDHPFTGPTAFLLGNEGQGLSERQMALCDGFLYIPQHGAGTASLNVAVAASIVLHHFAVWAGYPERERE 173          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A6I9QSD9_ELAGV (uncharacterized protein LOC105039776 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QSD9_ELAGV)

HSP 1 Score: 119 bits (299), Expect = 1.150e-30
Identity = 65/149 (43.62%), Postives = 93/149 (62.42%), Query Frame = 1
Query:   16 QSFLITHGVTKAANIKTLIETASIFGC-QVVFVGAPKIYSKLPEHFLGRIHH----NFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            +S ++ H V K  N+ TL  +A+ FG  +++FVG  + ++    H  G   H    +F  L  A  YLKE+    I G+EI + A +V H PF   +AF++G+EG G+SEK+  +CD F+YI QYGGGTASLNV VA+SI++  F VWA
Sbjct:   10 ESLVVVHNVAKRHNVGTLARSATAFGVSEIIFVGR-RDFNAFGSH--GSTSHLRFRHFLSLSQAHLYLKEERDCDICGVEITEGAISVTHHPFKKSTAFLLGNEGTGLSEKECEICDFFVYIPQYGGGTASLNVTVAASIVLHHFGVWA 155          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A0A8J4FB88_9CHLO (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4FB88_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 1.400e-30
Identity = 64/154 (41.56%), Postives = 98/154 (63.64%), Query Frame = 1
Query:   22 FLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHFLGRIHH----NFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWAQQQKKKEE 471
            F+ITH V+K  NI T++ +A+ FG + V +   + ++    H  G   H    +F  L+  V +LK+     + GIEI + A  V+  PFT  +AF++G+EG G+SE+Q ++CD F+YI Q+G GTASLNVAVA+SI++  FAVWA   +++ E
Sbjct:   24 FIITHSVSKRHNIGTILRSATAFGVKEVCLVGSRQFNTFGSH--GSDAHVALKHFHTLQQCVQHLKDVEGCRVLGIEICEGALPVQEHPFTGATAFLLGNEGQGLSERQMALCDGFVYIPQHGAGTASLNVAVAASIVLHHFAVWAAYPERERE 175          
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Match: A9NYY5_PICSI (SpoU_methylase domain-containing protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NYY5_PICSI)

HSP 1 Score: 119 bits (299), Expect = 1.400e-30
Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 1
Query:   16 QSFLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHFLGRIHHNFAR---LEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFIMGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWA 447
            +SF+I H V K  NI TL+ TA+ FG   V +   K ++    H    +H NF     L+ A  YLK++  + I G+EI D A  V   PF   +AF++G+EG G+S K+  +CD F+YISQYG GTASLNV VA+SI++  FAVWA
Sbjct:    2 ESFVIVHNVAKRHNIGTLVRTATAFGVSEVILVGRKDFNAFGSHG-STLHLNFRHFYTLQQAHQYLKDK-DSDICGVEIADGAIAVHEHPFKKSTAFLLGNEGTGLSSKEMEICDYFVYISQYGCGTASLNVTVAASIVLHHFAVWA 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1253.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1FQJ6_PYTOL2.960e-3449.33Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Y1HUT9_KLENI8.060e-3446.71SpoU_methylase domain-containing protein n=1 Tax=K... [more]
A0A0K9PY49_ZOSMR8.050e-3344.59RNA methyltransferase, TrmH family protein n=1 Tax... [more]
A0A7S1C439_9STRA2.380e-3247.95Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A4RR86_OSTLU1.190e-3143.14SpoU_methylase domain-containing protein n=1 Tax=O... [more]
G5A0Y2_PHYSP2.960e-3147.95SpoU_methylase domain-containing protein (Fragment... [more]
A0A8J4BLB6_9CHLO6.980e-3140.99SpoU_methylase domain-containing protein n=1 Tax=V... [more]
A0A6I9QSD9_ELAGV1.150e-3043.62uncharacterized protein LOC105039776 isoform X1 n=... [more]
A0A8J4FB88_9CHLO1.400e-3041.56SpoU_methylase domain-containing protein (Fragment... [more]
A9NYY5_PICSI1.400e-3045.58SpoU_methylase domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1253contigH-akashiwo_Contig1253:97906..98385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog242159.ABO94148
PFAMsSpoU_methylase
Model size480
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.95e-32
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota,37NZR@33090|Viridiplantae,34HWR@3041|Chlorophyta
DescriptionSpoU rRNA Methylase family
Cds size480
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387134.3417854-CDS-H-akashiwo_Contig1253:97905..983851681387134.3417854-CDS-H-akashiwo_Contig1253:97905..98385Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1253 97906..98385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1253.2.1prot_H-akashiwo_Contig1253.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1253 97906..98385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1253.2.1

>prot_H-akashiwo_Contig1253.2.1 ID=prot_H-akashiwo_Contig1253.2.1|Name=mRNA_H-akashiwo_Contig1253.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=160bp
GLPSYQSFLITHGVTKAANIKTLIETASIFGCQVVFVGAPKIYSKLPEHF
LGRIHHNFARLEDAVAYLKEQWQATIYGIEIMDEADNVEHLPFTSHSAFI
MGSEGHGMSEKQKSMCDRFIYISQYGGGTASLNVAVASSIIMQRFAVWAQ
QQKKKEEAA*
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mRNA from alignment at H-akashiwo_Contig1253:97906..98385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1253.2.1 ID=mRNA_H-akashiwo_Contig1253.2.1|Name=mRNA_H-akashiwo_Contig1253.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=480bp|location=Sequence derived from alignment at H-akashiwo_Contig1253:97906..98385- (Heterosigma akashiwo CCMP452)
GGTCTACCAAGCTATCAGTCGTTCTTAATCACCCATGGAGTCACAAAGGC TGCAAATATCAAGACCTTGATAGAGACTGCATCGATTTTTGGGTGCCAAG TTGTCTTTGTAGGTGCACCCAAAATTTATTCAAAGCTTCCTGAACATTTC TTAGGAAGGATACACCATAATTTCGCTCGCCTCGAGGATGCAGTGGCGTA TTTGAAGGAGCAATGGCAAGCAACGATTTATGGAATAGAAATAATGGATG AAGCAGATAATGTGGAGCATTTGCCTTTCACAAGTCACTCAGCTTTCATA ATGGGGAGTGAAGGGCATGGAATGAGCGAAAAGCAGAAAAGTATGTGTGA TAGGTTTATTTACATATCTCAGTATGGGGGTGGAACTGCCAGTTTAAATG TTGCAGTGGCTTCATCCATCATCATGCAACGGTTCGCTGTGTGGGCACAG CAGCAGAAAAAGAAGGAGGAAGCAGCATAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1253:97906..98385-

>mRNA_H-akashiwo_Contig1253.2.1 ID=mRNA_H-akashiwo_Contig1253.2.1|Name=mRNA_H-akashiwo_Contig1253.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=480bp|location=Sequence derived from alignment at H-akashiwo_Contig1253:97906..98385- (Heterosigma akashiwo CCMP452)
GGTCTACCAAGCTATCAGTCGTTCTTAATCACCCATGGAGTCACAAAGGC
TGCAAATATCAAGACCTTGATAGAGACTGCATCGATTTTTGGGTGCCAAG
TTGTCTTTGTAGGTGCACCCAAAATTTATTCAAAGCTTCCTGAACATTTC
TTAGGAAGGATACACCATAATTTCGCTCGCCTCGAGGATGCAGTGGCGTA
TTTGAAGGAGCAATGGCAAGCAACGATTTATGGAATAGAAATAATGGATG
AAGCAGATAATGTGGAGCATTTGCCTTTCACAAGTCACTCAGCTTTCATA
ATGGGGAGTGAAGGGCATGGAATGAGCGAAAAGCAGAAAAGTATGTGTGA
TAGGTTTATTTACATATCTCAGTATGGGGGTGGAACTGCCAGTTTAAATG
TTGCAGTGGCTTCATCCATCATCATGCAACGGTTCGCTGTGTGGGCACAG
CAGCAGAAAAAGAAGGAGGAAGCAGCATAG
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