mRNA_H-akashiwo_Contig1251.13.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1251.13.1
Unique NamemRNA_H-akashiwo_Contig1251.13.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: A0A2U7UA02_9VIRU (Ankyrin repeat domain containing protein n=1 Tax=Pandoravirus quercus TaxID=2107709 RepID=A0A2U7UA02_9VIRU)

HSP 1 Score: 53.9 bits (128), Expect = 8.480e-7
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 2 
Query:    2 RASPHAMDWAAQNGHLDVCEFLHHNRSEGCT 94
            +A+ H MDWAA NGHL + EFLH NR+EGCT
Sbjct:  473 QATTHEMDWAASNGHLKIVEFLHWNRTEGCT 503
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: D8LE58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE58_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.140e-6
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:   20 MDWAAQNGHLDVCEFLHHNRSEGCTT 97
            M+WAA+NGHL V +FLHHNR EGCTT
Sbjct:    1 MNWAAENGHLSVAQFLHHNRREGCTT 26
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: A0A0B5JCG9_9VIRU (Ankyrin repeat protein n=2 Tax=Pandoravirus TaxID=2060084 RepID=A0A0B5JCG9_9VIRU)

HSP 1 Score: 53.5 bits (127), Expect = 1.160e-6
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:    2 RASPHAMDWAAQNGHLDVCEFLHHNRSEGC 91
            RA+ H MDWAA NGHL + EFLH NR+EGC
Sbjct:  472 RATTHEMDWAASNGHLKIVEFLHWNRTEGC 501
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: W2I931_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2I931_PHYPR)

HSP 1 Score: 50.8 bits (120), Expect = 4.330e-6
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:   20 MDWAAQNGHLDVCEFLHHNRSEGCTT 97
            MD AAQNGHL V ++LHHNR+EGCTT
Sbjct:    1 MDGAAQNGHLSVVQYLHHNRAEGCTT 26
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: A0A7S4DAC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAC4_HETAK)

HSP 1 Score: 48.9 bits (115), Expect = 9.800e-6
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 2 
Query:   17 AMDWAAQNGHLDVCEFLHHNRSEGCTTDD*PRA 115
            AMD+AA NGHL V E+LH NRSEGCTT+   RA
Sbjct:    2 AMDFAAGNGHLCVVEWLHANRSEGCTTEAMDRA 34
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: A0A146JDN6_9VIRU (Conserved ankyrin repeat-containing protein n=1 Tax=Tokyovirus A1 TaxID=1826170 RepID=A0A146JDN6_9VIRU)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 21/30 (70.00%), Postives = 22/30 (73.33%), Query Frame = 2 
Query:    2 RASPHAMDWAAQNGHLDVCEFLHHNRSEGC 91
            + S  AMDWAA  GHL V EFLH NRSEGC
Sbjct:   27 KCSKKAMDWAAMEGHLPVVEFLHKNRSEGC 56
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: A0A8K1C8W4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C8W4_PYTOL)

HSP 1 Score: 50.4 bits (119), Expect = 1.430e-5
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:    2 RASPHAMDWAAQNGHLDVCEFLHHNRSEGCTTD 100
            R S  AM+ AA+NGHL+V ++LH NR+EGCTTD
Sbjct:  206 RVSTAAMNEAAKNGHLEVVQYLHENRTEGCTTD 238
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BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: UPI000644C05C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C05C)

HSP 1 Score: 50.1 bits (118), Expect = 1.940e-5
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 2 
Query:   11 PHAMDWAAQNGHLDVCEFLHHNRSEGCT 94
            P  MD AA NGHL+V E+LHHNR+EGCT
Sbjct:  195 PSTMDHAATNGHLNVVEYLHHNRTEGCT 222
[Close]
BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: F4Q1H4_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q1H4_CAVFA)

HSP 1 Score: 50.1 bits (118), Expect = 1.940e-5
Identity = 19/26 (73.08%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:   17 AMDWAAQNGHLDVCEFLHHNRSEGCT 94
            AMDWAA+ GHL++ E+LH NRSEGCT
Sbjct:  317 AMDWAAERGHLNILEYLHLNRSEGCT 342
[Close]
BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Match: UPI000644D88E (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644D88E)

HSP 1 Score: 49.7 bits (117), Expect = 2.640e-5
Identity = 21/32 (65.62%), Postives = 25/32 (78.12%), Query Frame = 2 
Query:    5 ASPHAMDWAAQNGHLDVCEFLHHNRSEGCTTD 100
            A P +MD AAQ G LD+ E+LH NRSEGCTT+
Sbjct:  352 AKPRSMDRAAQGGKLDIVEYLHINRSEGCTTE 383
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1251.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2U7UA02_9VIRU8.480e-767.74Ankyrin repeat domain containing protein n=1 Tax=P... [more]
D8LE58_ECTSI1.140e-676.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0B5JCG9_9VIRU1.160e-670.00Ankyrin repeat protein n=2 Tax=Pandoravirus TaxID=... [more]
W2I931_PHYPR4.330e-676.92Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A7S4DAC4_HETAK9.800e-669.70Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A146JDN6_9VIRU1.110e-570.00Conserved ankyrin repeat-containing protein n=1 Ta... [more]
A0A8K1C8W4_PYTOL1.430e-563.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000644C05C1.940e-571.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4Q1H4_CAVFA1.940e-573.08Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
UPI000644D88E2.640e-565.63hypothetical protein n=1 Tax=Acytostelium subglobo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1251contigH-akashiwo_Contig1251:135249..136123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size196
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size156
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.5196028-UTR-H-akashiwo_Contig1251:135248..1352501681387133.5196028-UTR-H-akashiwo_Contig1251:135248..135250Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1251 135249..135250 -
1681387133.549021-UTR-H-akashiwo_Contig1251:135748..1357591681387133.549021-UTR-H-akashiwo_Contig1251:135748..135759Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1251 135749..135759 -
1681387133.5582135-UTR-H-akashiwo_Contig1251:136096..1361231681387133.5582135-UTR-H-akashiwo_Contig1251:136096..136123Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1251 136097..136123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.528601-CDS-H-akashiwo_Contig1251:135250..1353461681387133.528601-CDS-H-akashiwo_Contig1251:135250..135346Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 135251..135346 -
1681387133.5385854-CDS-H-akashiwo_Contig1251:135688..1357481681387133.5385854-CDS-H-akashiwo_Contig1251:135688..135748Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1251 135689..135748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1251.13.1prot_H-akashiwo_Contig1251.13.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1251 135251..135748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1251.13.1

>prot_H-akashiwo_Contig1251.13.1 ID=prot_H-akashiwo_Contig1251.13.1|Name=mRNA_H-akashiwo_Contig1251.13.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MGTWMCVNSYITIALRAAPQTTDHAPPRNRLPAPGAIWLPEPPLLSRAAA
R*
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mRNA from alignment at H-akashiwo_Contig1251:135249..136123-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1251.13.1 ID=mRNA_H-akashiwo_Contig1251.13.1|Name=mRNA_H-akashiwo_Contig1251.13.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=875bp|location=Sequence derived from alignment at H-akashiwo_Contig1251:135249..136123- (Heterosigma akashiwo CCMP452)
CCGCGCCTCGCCCCACGCCATGGACTGGTAAGATGCCGCCCCTCGACCCT
GCGGCGCGAGAGGCGGCGGCGGAGCAAGGGAAGCGACGGAGACGGAGGCT
GCAACAACCTTGCTTGTCATGATAGATAAGATCACGGAGAGGAGAGGCGA
AGGCCTGGGGTTGCCACTTGCGGGCAAAGAAGGGCAGGGGAAAGAATAAG
GAAGGGCAAAACAATAATACCCCCCAAAAAAAAAAAAATAAATAAATAAA
AAGTAGTCTGTGGTACAATGATGCACTGAACGACCAAGTGATGGTCCAAC
ATCCTTTATTCACTTGAGTAAGTATATTTTGTTGTTATTCGCTATACATA
TTTCTGCTGATTAGGGCTGCCCAGAATGGGCACTTGGATGTGTGTGAATT
CCTACATCACAATCGCTCTGAGGGCTGCACCACAGGTAATGGTCATGAAG
TATTTGTCTCACCATCATTCACTAATCATGACCCACAAGCGTGCTCTGGG
TCGGTACACTAGACCAAGCCTCATCTTACAGTAGATCAGCCTTCAACACT
TTGACTATTTTGGATAGGGCGGTTTACATGGTTGGGGTTCCTTCAAAAAA
ACAGCATTCCACCAAACAAATCTCAGATGAAGAAATACTGCTATATAAAT
TCTGCAATAATTCCTACATACCTGGATGATCTCGCAGCAGCAATAATATA
CAAACGTTGGTTTTGATTGATCATGATGCTGCTTTAAAGTGCACAGCTTT
ATTGCCCCCCCCCCCCGGGGCACCCAGACGACTGACCACGCGCCACCCCG
AAATCGCCTTCCTGCTCCGGGCGCCATCTGGCTGCCCGAGCCGCCGCTGT
TGAGCCGAGCAGCGGCAAGATGAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1251:135249..136123-

>mRNA_H-akashiwo_Contig1251.13.1 ID=mRNA_H-akashiwo_Contig1251.13.1|Name=mRNA_H-akashiwo_Contig1251.13.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig1251:135249..136123- (Heterosigma akashiwo CCMP452)
ATGGGCACTTGGATGTGTGTGAATTCCTACATCACAATCGCTCTGAGGGC
TGCACCACAGACGACTGACCACGCGCCACCCCGAAATCGCCTTCCTGCTC
CGGGCGCCATCTGGCTGCCCGAGCCGCCGCTGTTGAGCCGAGCAGCGGCA
AGATGA
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