mRNA_H-akashiwo_Contig1250.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1250.6.1
Unique NamemRNA_H-akashiwo_Contig1250.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A7S3XVY7_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVY7_HETAK)

HSP 1 Score: 428 bits (1101), Expect = 4.590e-148
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQALGYISLSEQLRMERGHPTPKGAAGSSKKNDDPGV 612
            CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQALGYISLSEQLRMERGHPTPKGAAGSSKKNDDPGV
Sbjct:  167 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQALGYISLSEQLRMERGHPTPKGAAGSSKKNDDPGV 370
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A7S2WS54_9STRA (Palmitoyltransferase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS54_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.530e-36
Identity = 73/177 (41.24%), Postives = 101/177 (57.06%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCR-HAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQALGYISL 528
            CGRCDA++PPR+HHC  CGRCIVRMDHHC W+NNCIGA+NQKHF LFL+Y  I  + +L+     +  C  H +  L +  S     +V V++   ++F   M+ +QV+A+ TG+G +DRM          ++      + PL   D+ G +    W  P   TF  E Q LGY  L
Sbjct:  103 CGRCDAYKPPRSHHCRICGRCIVRMDHHCPWMNNCIGAKNQKHFFLFLIYASIQCVIALVVPLVRITTCSTHCFPGLTTHFS----IAVVVIALLVLIFVSSMIYNQVYAIMTGIGTIDRM----------KRRARTFHLMPLDWSDVFGMDNWLLWPVPIDPTFEEEDQVLGYTRL 265
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: D7G6X3_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6X3_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.500e-33
Identity = 73/176 (41.48%), Postives = 107/176 (60.80%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVC-RHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTF--PNEQQALGY 519
            CGRC++++P RAHHC  CGRC+VRMDHHC W+NNC+G  NQK+F+LFL Y+   + Y++  + YH + C    YC+ +S L+  L+ +V V++  +++FT  MLL+Q H + TGLG VDRM  +   K    +   +   +PL   DI G      W  PT   F  P  ++ LG+
Sbjct:  138 CGRCESYKPTRAHHCRLCGRCVVRMDHHCPWMNNCVGIANQKYFILFLFYVLAVTGYAIGLVLYHFVECVAEEYCDDYSTLTANLIRAVLVIAAAAMVFTLSMLLNQFHGVITGLGTVDRMQRRR--KEGRVRGGPEDF-RPLRWADIFGDGNKLMWIFPTDPHFRKPQRERILGF 310
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A7S2DB62_9STRA (Palmitoyltransferase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DB62_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.560e-26
Identity = 67/176 (38.07%), Postives = 95/176 (53.98%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLI---FMTYHLLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQALGY 519
            C  C +++PP AHHC  C RCIVRMD    WVNNCIGA N+KHF+LFL+Y    ++YSL+   ++T      R+    L +D++   + +  V+S F V FT  ML  Q   M TG G +DR    H  K +      ++  +P   KD+ G+   F W  P ++   N+   LGY
Sbjct:   14 CAHCQSYKPPMAHHCNICRRCIVRMDXXXPWVNNCIGALNRKHFILFLVYTWCLAIYSLVITAWLTSKFSHMRNLVTYLRADVA---IMTFAVISIFGVYFTSTMLHQQFLVMMTGYGGIDR----HEIKNHGI----ELPFRPTNAKDVFGEGAMFKWGIPLNLVLENKNDLLGY 178
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A835YVM4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM4_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.150e-25
Identity = 71/190 (37.37%), Postives = 101/190 (53.16%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCRHA--YCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQA---LGYISLSEQLRMERG 555
            C RCD F+PPRAHHC  C RCI RMDHHC WVNNCIGA NQK F+LFL Y  + S+Y L     +   C      C   +  +     ++ VLSF +++FT  ML +Q H++  G+G VDR+  +   K      L  +  + L  + + G      W  P  + + +E+ A   LGY+  ++ L+   G
Sbjct:  145 CARCDGFKPPRAHHCRVCRRCIARMDHHCPWVNNCIGALNQKAFILFLAYTLLLSVYGLGLGAAYFYACESGDESCLEHTPTTSTFAPTLLVLSFGALLFTVTMLANQTHSVVKGVGTVDRVQRRR--KRQPPHPLTHV-ERALRWRRVVGTGSKLRWLLPLDIAY-SERDAPLLLGYVIPAQLLQRGGG 330
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: F0W2S2_9STRA (Palmitoyltransferase n=2 Tax=Albugo TaxID=65356 RepID=F0W2S2_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.310e-23
Identity = 66/188 (35.11%), Postives = 99/188 (52.66%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVC-RHAYCNLWSDLSWWLLWSVFVL--SFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFF---WACPTSVTFPNEQQA--LGYISLSEQL 540
            C RC  F+P RAHHC  C RC+++MDHHC W+NNC+G  N K FLLF+ Y+ + SLY+++      LVC R+A+C   +  S   +  VF++  S    +FT  M+  Q   + TG   +DR+   +               Q  GV+++ G     F   W  P ++ FP  +Q   LGY+  S+Q+
Sbjct:  113 CRRCRQFKPVRAHHCSICERCVIKMDHHCPWINNCVGLGNHKFFLLFIFYVFLLSLYAMV------LVCIRYAHCVNVNCPSTGAIRVVFLVLESMLFGLFTVCMMCDQYSVITTGATQIDRLKGDYS--------------QNFGVREVFGGADTSFSIDWLLPINIWFPKTEQVRLLGYVLASDQM 280
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: UPI000F558464 (palmitoyltransferase ZDHHC3-like n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F558464)

HSP 1 Score: 105 bits (262), Expect = 3.170e-23
Identity = 67/174 (38.51%), Postives = 95/174 (54.60%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYH-LLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFF---MLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQA 510
            C +C+A+RPPRAHHC TCGRCI +MDHHC W+NNC+G  NQK+F+LFL Y  + SLYS+I       + C    C    +    L+++V +L    V+F  F   ML  Q  A+   L AV+ +  +       + AL         + ++ G+   F W CP S T P+ QQ+
Sbjct:  101 CAKCEAYRPPRAHHCRTCGRCIRKMDHHCPWINNCVGEANQKYFILFLFYTGLASLYSIILTAVSWTMECNG--CTKDYEKRTRLIYTV-ILMIEGVLFGLFVLAMLCDQFSAITGDLTAVEHVQRQIRTNRKPRSAL---------LAEVFGRGGFFIWFCPCS-TPPSPQQS 261
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A8J9USM6_BRAAE (Hypothetical protein n=2 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9USM6_BRAAE)

HSP 1 Score: 104 bits (260), Expect = 5.560e-23
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLV-CRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFM---LLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTS 483
            C RCD  RPPRAHHC  C RCI RMDHHC W+NNC+G RNQK+F+ FL+Y+ I S+Y++  +    L  CR    N     +   +    +L   S +F  F+   L+ Q+ A+     AV+++  +H   Y + K    +L++      +CG++  F W  P S
Sbjct:   94 CNRCDTLRPPRAHHCRICQRCIKRMDHHCPWINNCVGERNQKYFIQFLIYVGILSVYAITLVVISWLTECRDCQQNFAIRQA--RIMHCVILMLESALFGMFVAAILVDQIQAILNDETAVEQV--QHQGPYRAHKEKMALLME------VCGRQHPFLWLLPCS 248
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A7S4N8L5_9STRA (Palmitoyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8L5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 7.650e-23
Identity = 64/190 (33.68%), Postives = 98/190 (51.58%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCRHAYCNL------WSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFPNEQQALGYISLSEQLRMER 552
            C +C +F+P   HHC  C RC+ RMDHHC W+NNCIGA N KHF+LFL+Y  I S  +L+    +  +C   + N+      +S +   L+  + V++  S++F   M+++    + TG G +DRM      K N+    D     PL  +D+ G    + W  P    F +    LG+ S  ++L  ER
Sbjct:  246 CSQCQSFKPQNCHHCRICDRCVSRMDHHCPWMNNCIGAANLKHFILFLIYTWIASGLALVVFALNYFLCHFFHRNVNDGTCQFSPVLQTLVRGMTVVAISSLLFVSSMIVNVAFGLVTGTGTIDRM------KRNAGINGDGAEPAPLHPEDVFGMGPVWTWPLPIDPVFRDHDAVLGF-STPQRLLRER 428
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Match: A0A5D6YBN5_9STRA (Palmitoyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBN5_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.020e-22
Identity = 66/188 (35.11%), Postives = 95/188 (50.53%), Query Frame = 1 
Query:    1 CGRCDAFRPPRAHHCMTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYHLLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLGAVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFF---WACPTSVTFPN--EQQALGYISLSEQLRME 549
            C RC  F+P RAHHC  C RC+++MDHHC WVNNC+G  N K FLLF+ Y+ + SLY+L+ ++     C +  C   S  ++ ++  V     F + FT  M+  Q   + TG   +DR+  +              +   LGV+++ G     F   W  P S+ FP   + Q LGYI  SE    E
Sbjct:  121 CRRCRQFKPGRAHHCSICDRCVIKMDHHCPWVNNCVGLGNHKFFLLFIFYVFVLSLYALVLVSLRYARCVNENCP--SHGAFRVMMLVLEAVLFGL-FTLCMMCDQYSVITTGATQIDRLKGE--------------VGDSLGVREVFGGASQGFSLNWLLPVSIWFPTSLKNQILGYILESELAGTE 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1250.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XVY7_HETAK4.590e-148100.00Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WS54_9STRA3.530e-3641.24Palmitoyltransferase n=1 Tax=Rhizochromulina marin... [more]
D7G6X3_ECTSI3.500e-3341.48Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2DB62_9STRA8.560e-2638.07Palmitoyltransferase n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YVM4_9STRA6.150e-2537.37Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
F0W2S2_9STRA2.310e-2335.11Palmitoyltransferase n=2 Tax=Albugo TaxID=65356 Re... [more]
UPI000F5584643.170e-2338.51palmitoyltransferase ZDHHC3-like n=1 Tax=Pocillopo... [more]
A0A8J9USM6_BRAAE5.560e-2336.97Hypothetical protein n=2 Tax=Brassicogethes aeneus... [more]
A0A7S4N8L5_9STRA7.650e-2333.68Palmitoyltransferase n=1 Tax=Odontella aurita TaxI... [more]
A0A5D6YBN5_9STRA1.020e-2235.11Palmitoyltransferase n=1 Tax=Pythium brassicum Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1250contigH-akashiwo_Contig1250:158672..168124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6X3
PFAMsDHHC
Model size865
Max annot lvl2759|Eukaryota
KEGG koko:K20029
KEGG TC9.B.37.2
Hectar predicted targeting categorysignal anchor
Exons6
Evalue1.06e-24
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota
EC2.3.1.225
Descriptionprotein-cysteine S-palmitoyltransferase activity
Cds size570
COG categoryZ
BRITEko00000,ko01000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1250.6.1prot_H-akashiwo_Contig1250.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1250 158717..167874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.4180243-UTR-H-akashiwo_Contig1250:158671..1587161681387133.4180243-UTR-H-akashiwo_Contig1250:158671..158716Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1250 158672..158716 +
1681387133.4859197-UTR-H-akashiwo_Contig1250:167874..1681241681387133.4859197-UTR-H-akashiwo_Contig1250:167874..168124Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1250 167875..168124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.4303267-CDS-H-akashiwo_Contig1250:158716..1587261681387133.4303267-CDS-H-akashiwo_Contig1250:158716..158726Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 158717..158726 +
1681387133.4403765-CDS-H-akashiwo_Contig1250:158920..1589511681387133.4403765-CDS-H-akashiwo_Contig1250:158920..158951Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 158921..158951 +
1681387133.4502552-CDS-H-akashiwo_Contig1250:159892..1600391681387133.4502552-CDS-H-akashiwo_Contig1250:159892..160039Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 159893..160039 +
1681387133.460235-CDS-H-akashiwo_Contig1250:160968..1610531681387133.460235-CDS-H-akashiwo_Contig1250:160968..161053Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 160969..161053 +
1681387133.4710023-CDS-H-akashiwo_Contig1250:163740..1637991681387133.4710023-CDS-H-akashiwo_Contig1250:163740..163799Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 163741..163799 +
1681387133.4785106-CDS-H-akashiwo_Contig1250:167636..1678741681387133.4785106-CDS-H-akashiwo_Contig1250:167636..167874Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 167637..167874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1250.6.1

>prot_H-akashiwo_Contig1250.6.1 ID=prot_H-akashiwo_Contig1250.6.1|Name=mRNA_H-akashiwo_Contig1250.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=190bp
MTCGRCIVRMDHHCAWVNNCIGARNQKHFLLFLLYLHITSLYSLIFMTYH
LLVCRHAYCNLWSDLSWWLLWSVFVLSFFSVMFTFFMLLSQVHAMATGLG
AVDRMMSKHFAKYNSQKALDQMLVQPLGVKDICGKERCFFWACPTSVTFP
NEQQALGYISLSEQLRMERGHPTPKGAAGSSKKNDDPGV*
back to top

mRNA from alignment at H-akashiwo_Contig1250:158672..168124+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1250.6.1 ID=mRNA_H-akashiwo_Contig1250.6.1|Name=mRNA_H-akashiwo_Contig1250.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=9453bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:158672..168124+ (Heterosigma akashiwo CCMP452)
TGCGGGCGATGTGATGCTTTCCGTCCTCCGCGGGCGCATCACTGCATGAC
CTGTGGTAAGTCGAAAACCTGTCCTAAATTATCAGGTTGCATCTATCATC
TTCATCATTATTATTCCTATCATCATGCATCTAAGACTAATGTCAAGCAG
TTGACCACCAGGAAGTTTTGAGAGCAGTGGTCTTATCAAGAATGACCATT
ACCTAATATACATGCCACTGCCATGTGCTGGTACTTTTTTTGAACACAGG
CCGATGCATTGTGCGAATGGATCACCACTGGTATGATTTGTGTTTATTTT
TATATAACTAAATTGACATCATCATCATCATAGATATAGAATATATGATA
CTGTGCTGTTCATTGTATATGATACTGTTGTTCATTGTTCACCTCTTAAA
AAGAAACTACTTTTATAGCCATTGGTTTATTAAATAAATGTGCATGGAAA
AAAAAAAAAAAACTACATTGCTGCCTTGCCTGCACTGGGCCTCTGATATG
AGGAACCGGCCATGATTGATTCGACAACAGAAAACTTTCAATCATTTTTC
ATACTTGGACAATTTTAGTCTTGAAGGAACGAAACAATCTGGCACTAGTT
CATGCTTCTCCATTATCATCATACATCATAAGAAAGAGTTCAAAGTTTTA
TTGATTAGAACAAAGCTATAATAGAAAATACTACTACTCTAGATTCCCAC
TCTATGACAGCGATGCCTGCATTTTGATGGCATCAAGAACAGCAAGTACT
CATTACTACTTCAAGTTTTTAGCTGTTGTGCAGGAGAGGCGCTGCTGTTA
GGGCTCCGTGATCATTTCCATTCGAACACTCGCAGACAGCCTGATGAAAA
GCGGCGTCTTGATGTAGAGCCACTGGGGGTGGAGTCCCCGAAACGGAGGC
ATCGCTGTCATAGAAGAGTGGGAATCTAGAGTAGTATAGTATTTTCTAGA
TAGCTTTGTTGTTCTAATAATCAATAAACTTTGAAATTCTTCTTATTTAT
GATGATAATGGAGCAGCATGAACTAGTGCCAGATTGTTCCATTCCGTCAA
GACTAAAATCGTCCAAGTAGAAAAAATGATTGATACTACAGTCTTGTCAG
AGATCAACACCGAAAAAATATAAAACTTTACATATTGCTGCTGCCGTGCT
TGCAATGGACATCATCGCAAGCACCTCTCTTATTAAGAAATAGCACCCCC
CCCCCTTCCTCCTTTTGACAGCGCCTGGGTGAACAACTGCATTGGCGCCC
GGAACCAGAAGCACTTCCTGCTCTTCCTGCTGTACCTGCACATTACCTCC
CTTTACTCCCTAATCTTCATGACCTACCACCTGCTGGTGTGCCGCCACGC
CTACTGTAACCTCTGGAGGTAAGGCCACACCGGGCAGGGGGGGGGGGCAA
GCGGAGAGGTTGGGGCAGGGGGCACTGAGGATGATGGAAAAAATTTCAGG
AGAGCACTATAACTTTCCCAAACGGAGAGGTTGGGGCAGGGGGTATGTAA
TGAGCGAAGGGAACAATTCGTCAGGAGTGCACTACAGTATGACTTTCCCA
AATGGAGAGGTTAAGGCAGGGGGTGTGTACTGAGCGAAGGGAACGATTCG
TCAGGAGTGCACTACAACTCTCCCAAAAAGAAGAAAACAAAAAAAAGGCT
TACAAAAGGAGAAGGGGTCGGGGTGGCTACACGAGACAACACTTTTCGTG
ACACGGTGTGGAAAAGTCAACAAGTTTTCCTTTCCTGGTATTTGAAAAGC
TCGTGAAAGTACAGACTGACCCCATCTATCTATTTTAGTATATTATAATG
GGGATGCTATGCATCATGTACCTTTGAGGTCTGACTAGTTATAGTTGCCT
GTATCTGGTCTGACTGAACAAAGGAGGATGGAGAAAGACAGAAGAAAGGA
GAAAGGCAATGTTGCCAAGATCGAGAGACTGAAAGAACGGCTTTGAAGAA
GAAAGGTCTCTCGAGTGCTGAAAGTAAGGCAATGCCATGAGTACCTGGAG
CAAGGACAAACATTCCATACCAACAAAAAGTCCAGGGCTGAAAGGGTAGC
TGAGGCCACTCCTTTTTTTCTTCCTTTTTTTTTTTCCTACGTTTTTTCAG
GCGATGCTTTACCAAACAGTACTACTCTGATTATAATGTTATATGTACAA
AAGGCAGTGAAGAATTTCACCGATAAGGGGGGGGCTGGTATTGTAAATGT
ATTGTAGATGAATAAATGTGATTTTCGCAAATATACTACTTCTGTGTATA
CATACAACCTGGTGACTTTTTTTGCCTTTTTCAATGACAATCAACAGTGA
CCTTTCGTGGTGGCTTTTATGGTCCGTATTTGTGCTGTCATTCTTCTCAG
TCATGTTTACCTTCTTCATGCTACTCAGTCAGGTGGGCGAATACTATGTC
TATTTTTGTTCCTTGATGAGCCTGCACGTGTTCTTCATTATTAATTATGT
ACTATATTATTGTGGAAGAATGGTGACTCGCGAAGCGCTTAGGCTGCTGA
CGCTCCGGCCGAAAAGCAGTCGACTAGAGGGGTGTAGGTGGTGCCTTCGG
GCGCTATCCATGCCTTTCTCGGATGAAGCCTCTGTCGTTCTTCGATGGAG
GAAGAATCCAGCCCCCGGGATAGATATCGACAGCAACTGATGGTGGCGAG
CCTGCTCGTCATGGGTTCCATCAACCAGGACAAACCCCGTCCTTGTGCGG
GCTGTATAGCCCCGGTGGTAGGCTGGAGGAAGACCCGACTTGTGGCCCCA
ATTCGGTGCGCGGACCAATCCGTGTGCTGATTCAGACCTAACCATAAAAC
AGTTGAGCTTAGCTCCTCAGGCCTTAGACTTTTTGTTCTAAGGCTCGTGA
CCAGCACCTGTGCGGTTATGATGATGATGCTCAGATTTGTTGTGAACATG
GAGGAGAAGGAGGGCAGAATGTTTCCTTAACAGCTGGGGTACATGAACAA
CAAGTGACTGGTGGCGGCGGCGTCGGAGCTTTTCATTTTGTTGTTGCCCA
CTCTTCTTCTCTCATTCATTTCCCATCTTCAATTGGTTCTCATTTTAGTC
AGAGGCAGCCTGATGAAGGCTGGCGGAGGATGGAGAGAGCCGCCAGCCGT
GGCTTTTAGTAGCCGAAATGCAGCATAGTTGTCATGGACTTAATGATTAA
AAACCTTTGACACATTGCCTTCTTGGCAGTGTGGAACTATACTCACTGAT
GTTGAAAGCGGTTCTCTGTTTAGACCCAACACCCTGCAATGTTTTCGTCT
ACCTGAAAAGTATCTGGACTGAGGTACTCTCGCATTCAGTTCAGTTTTTT
TCGTCCCTGCTCCGCCTGTGCAAACGATTAACTTCACGTTTAGTGAGCTG
CCCTGCTTGTGGAAGAATGGTGACTCATGAAGCGCTTTAGGCTGCTGACG
CTCCGGCCGAAAAAGCAGTCGACTAGAGGGTGTAGGTGGAGCCTTGGGCG
CTATCCATGCCTTTCTCGGATGAAGCCTCTGTCGTTCTTGATGGAGGAAG
AATCCAGCCCCGGATAGATATCGACAGCAACTGATGGTGGCGAGCCTGCT
CGTCATGGGTTCCATCAACCGGGACAAACCCCGTCCTTGTGCGGGCTGTA
TAGCCCCGGTGGTAGGCTGGAGGAAGACCCGACTTGTGGCCCCAATTCGG
TGCGCGGACCAATCCGTGTGCTGATTCAGACCTAACCATAAAACAGTTGA
GCTTAGCTCCTCAGGCCTTAGACTTTTGTTCTGAGGCTCGTGACCAGCAC
CTGTGcCGGTTATGATGATGATGCTCAGATTTGTTGTGAACATGGAGGAG
AAGGAGGGCAGAATGTTTCCTTAACAGCTGGGGTACATGAGCAACAAGTG
ACTGGTGGCGGCGGCGTCGGAGCTTTTCATTTTGTTGTTGCCCACTCTTC
TTCTCTCATTCATTTCCCATCTTCAATTGGTTCTCATTTTAGTCAGAGGC
AGCCTGATGAAGGCTGGCGGAGGATGGAGAGCCGCCAGCCGTGGCTTTTA
GTAGCGAAATGCAGCATAGTTGTCATGGACTTAATGATTAAAAACCTTTG
ACACATTGCCTTCTTGGCAGTGTGGAACTATACTCACTGATGTTGAAAGC
GGTTCTCTGTTTAGACCCAACACCCTGCAATTATTATAAGTATTAGCAGT
TTGTCATTTAGTTCATCGCTGACAAGGCGTGTTGATGACGGCCGGCCACT
AAACTTGGCTGGTGGTCTGCTAGAAACAACTTGTTCACATCAAATCTTGT
AATGATTTCAAGCCTTTAACGAGCAACATTCATCTATGTCTATGTGTCTG
TTTTTTTTTATAAATTACTACTATTATTATTATTATTAGTAGAGGCGTAT
CATTTGCTAGAAGATCAATTAATTGTTCCGTACCATCAGTGATCACTTTC
ATTTCAATTATTATCATTATTGATTGGCTATACTAATAATATTTAGTTTT
TTTTTGTGCATGTTATGAGCCCCACTATAGTATATGGTTGTCTTGATGGC
GCCATTTCGGTTGTTCTTGCTTTCTATATATTATCTAGAGGAAGTAGAAC
GCCTCTGTGGGAATCAGATCAGTATAGTAAGAAAAACTCCCTCGCGACGC
GAAACACTTTTTTTTTTAAAGAAGAAAAAGAATAAAAAGGGGAAAGAAAT
TCTTGAAATTTTCTTGGTTACCTATGTCTCATTCGGGAGATTGTCTTAGT
CCTGGGTCCTGGCTGCATCCGTAACAAAAAAGTCTCTCGGAAATCAGTGG
GAGTTGATCTTATGAATATGATATTCTAGAAAACGACACGCCTACGTACG
TACACATTTATCTGATCAGTACACCAGGGTCACTAAAGTAACCAGAGGGG
TAATTTAGTATTATTATATGATGATAATAACGATAACTAGATCATGAATG
ATATATGATGCTGCTGAGGATGACGTTAATTTTGGTTTTCAGTCTAGCCT
TTCAAACCGCTTTCGATAATGAAGATATATGTGTGTGTGTGTGTATATGA
GTGTGGGTTGTAAATTATATTTTAATGAATGATTCAATTTGATTGTATAT
TAACAACACACAACGACAGGTTCATGCAATGGCAACGGGCCTTGGAGCAG
TAGACCGGATGATGAGCAAACATTTTGCGTAAGTCATAATTTTTTTTGTG
TAAATATGCATGTGTCTGCTATGATACCACATTTGGATGCGGTTACAAAA
GGCTTGAGTGTGTACACGAGTTTCACAGAAATGATCATTTGTTACTACAG
TGGAGTGGCATACACAGACGCGTTTCGGCCTTGTTGGGCCAATCGTCAGT
GCACAGCAGCCTTTCTACTACAACAGCCAAATTACATCCTGCTTGGCTTG
TGTACAAGTGGGAATGCTGCAACTGGATGAAATAGGTATCATGTTGGAGC
AACAACCTGCCTCATCTTTCTGGCACTTGTACTGTGGTGCAACTCAGTAC
TGTAAATGCCTAAGTAGTAGGACTTGTTGATCATCAGAGATGATCTATCT
AGTTGTGCTGCTCCCCGTATCTGCCTATCAACCCTGCACACCACACACCA
CCTCTCATAGGAGCGGAGATACACACCACCGCACCACCATCACCTCTATG
CACGCCAGAAGGCATTATTACCAACAACCCACCACTTTGTGACGTAAGCT
AAACTATGAAAGGCGTCAATTTCGTCCCTCCCCACAACAATGATTATGGG
CAATTGACCTGCGGTAGAAGGTTGTGGATTTGCTCCCGCCCTGCGAAGAA
GCTCGTGGATTTGCTCCGCTTGTATTTTTGTTTTTGCCGGAGGGACGAAG
ATGGCTTTGAAACTTTGCGGTGGATCTGATGACGATGACGATGATGAAGC
TGGAACATCGCAGCGATGTGATTGAGATTGTGATTTGGTAACATCCTTTA
CAAGGAGAATTGATTATGACAGTTTCTTCCGTGATTAATTGGCGGCACCC
TGCGTGCAGAAGATGCGTCTACAACAGATATGGTGGCTCAAGCCTTCCTG
CGATTGAAAATTGCGGTTTCTTCCACTACGACGTGTTGCACTGACGGCTG
CACCTATACTCAACTCTGAGATAGCTTGTTCTTTACAAATTTGTGAAAGG
TTCTGATTCTTTTCTCTTTGGTTGCTTCTGCCCTGATCACCTTGGCGTAG
CAGCTCCTGGCCCCTAGAGATCTTACTTCTGGTGTCAGCAACTGACTTTT
TCTTGTTTTTTCTTTGATAACTGTCTGGAAATGGAGGCGCTAACATTATG
GAAATGGAGTGTTTTTTTTCTGAAACGGAGGGGTGACTCATCCAGTGCAG
TACTACATGTACTACCTTGGTACCACTGCACAATTGACACATGTGATGCA
CAGTTCACTTGGTAAGCTGGAGCAGCTTAGGAGGGGACTTTGTTCACAGT
GCTTACTCCCTTGATGATTGTGGAGGGGCGTTGAAGTGATGGCAATTATA
CCAAGTACGCTCGCACAGTTCACACCGGCAGCGACCCGCAGCAACAGCCT
GGACAGCCCACGGCAGCACGCCGCATCCCGCAGTCATTAACCCGCGTTTG
TGTACAGTTGCAATCATGTTGGAGCAACAACCTGCCTCATCTCCCTGGCA
CTTGTACTGTGGTGCAACTCAGTACTGTAAATGCCTAAGTGGCAGGACTT
GTTGATCATCAGAGATGATCTAGTTATGCTGCTCCCCGTATCTGCCTATC
AACCCTGCACACCACCTCTCATAGGAGCGGAGACACACACCACCACACCA
TCACCACTATGCCGCCAGCAGGCATTACCAATAACCCACCACTTTGTGAT
GTAAGCTAAACCATGAAAGGCGTCTAGATAGTTCGTCCCTCCCCACAACA
ATGATACCACATTTGGATTTGGTTATTACAAAAGGGTTGAGTGTGTACAC
GAGTTTCTCAGAAATGATTATTTGTGTGTGTACATGCACAACATGTGGCG
GCTAACGAACGAATGAGGGTTGAAGATTTCGCGGACGTGTATTTCGTATT
TTTGTAGCGACATTATTATTTTGGAAATAAAATGGTTTTCAATATTGAAA
TAAAATGATTTTCGATATCATTTCTTTATTTATTCAGTCGGATAATGATA
TTATTTTTTTGAAAAAGAGCAGGAAAAAAAATGGCGATTGAAGTCCATTT
GGGACGAGCGATTGAAGTGCCAACTGTTGGCATAATTATCCTGACCGCGG
CCGCAGATGTTTGAAGTTGAAGCCGAAATCCCATTCATGTGACGAGGTGA
AGCTGACTAGAAGAAGCACTTTCCCCCAAAGTTGAATGCGCGCGTCTTTT
CAAATGTTCTTGAACGACGGGAACAAAGCACACAGAAGAGTTCATGTATA
TATACCCCATCTTGTACATGATTTGATCTGGCTGTGTTTTAGTTGGGGGG
ACACCTCTCCCTTGTGAACTTTCCAGTCGCCAGTTCAATGAGCGCTTCGA
TGATGGCAGCTGCTGCACACAGCAGCCCACAAAAAACGATGATAGTGGTG
GAGGGTGGAGGGTGGAGGAGGAGGGTAGCAGCAGCAGCAGCAGCAGCAGA
ACATCAATCATCAGTTGAAATGAAAGTGATCACTGATGGTACGGAACAAT
TAATTGATCTTCTAGCAAATGATACGCCTCTCCAGCTTCCGACTTTTCGA
TATGAAGTAATGCCTTCTTCACGGAGTCACCAAGTTGGCCAGGTCCCATC
AAGGTAATGATAAAGGTGGTCCAGCCAAACTTTTCTCTTTGTCTTTTTTT
GATATTTGGAATTCATACACCATCTAAGCATTTCTGTCTATTCTCCAAGG
AGACTTCACGAGAAAAAAGGCAGGGACACGAATTCAGACAAAAAATCTAT
CACAATTAGCGGGACTTTGGCAGGAATATCACAATGTCAATAGGATTTGA
ACCAAAAATTGGTATTACATTTCAAAAGTCGTTTCCAAGCAGCATTTTTT
AGAATTCGACAAAAAGCTGAGTGAATATAGAAAGTTTCTAGCTGAGGCGA
CCTCAGATAAAGTTTGCAGAGTTCTCTTAAATCATTCTTTCTTTATACAA
GAGATTGAAAGATAGGCGTGTGGAAAATAAACGTCGATAGAAATCTTATC
ATCAAAAATGTGTGGTAAATTTGTATGATTTCCATATTTTTTTTATCAAT
CAGGTGATATTTTGATGATTCATAGAAACCTAAATACCCTTGTAATAAAT
CTTAGAATTTCCCTTTATCATTACGAGACGTCAGAAGCTCCTAGCCACAG
AGATGGGAGGCGAATCGGGCGATGATGACACGGTGGCAAGAAGGAATCGG
GCATATGCATAGTAGAGAACTGGCTTCCTCAAAGCTCCAGAAGGCGTGTT
GCGTGTGGGGAGAAGCTTCGAAGACGAGACCCCCCCTCTCTCCTCCAGCT
ATTAATATTTCAAAAATAAACAAGGACCACGACGAATCTTCTTCTGGATC
ACCAAAAACACGTCGGCAATTTAGACACTACATTTTTTGAACAGAACTTC
AAGGTTATTGATCTGGGTCTTTGAGGCAAAGAAGTAGAAGCACGGGAACG
CGTTGCCACCAAAAACCAAAAAAGTGTAATATATATGTATCATTGGGAGC
TGAATTGAGAGGCGTATAGATTTCTAGAATAATATGTATTGTAATTATAA
ACAATTGCTGTCCATTATTTCAACTGAGAATAGCAGGCTCATCATGTATC
ACGATTCTTTTTAGGGGTATTCATCTCCGTTTCTATGAGCTTGCACAAGT
TAGACTAACTCATAAATAAATCTATGTATAACATTAAAAGCTGCTGCAAG
TTATGGTATTTTTTCAAAGTTCATCTGTAAGCAGGTTTTTGGCAAAACAA
AGTTGTGGCTGCCCCTGGCAGAACGCATTCAAGCAAAAAATGTTTTCTCT
TTATCTGACAGCCTAACACTTCTTCCACTTCTTCCTTCTTCACAATAACC
CTTTTTTTTCAATAGAAAATACAACAGCCAAAAAGCACTTGACCAGATGC
TTGTTCAGCCACTTGGAGTTAAGGACATATGCGGAAAAGAACGCTGTTTT
TTTTGGGCATGCCCTACCAGCGTAACATTTCCCAATGAACAGCAGGCGCT
GGGTTACATATCTTTGTCAGAACAACTAAGGATGGAAAGGGGCCACCCAA
CACCAAAAGGAGCAGCAGGTAGTAGTAAAAAAAATGATGACCCAGGGGTG
TAGACAACACAACAGGAACACAAGAGGAAGCAGTGGTGGTGGTATTTGTT
GTTGATTGTGGCCTAATTGTTGATTGTGGCCTAATACTAATTATAACATA
TTATACTACTACTAGCGAGGTTGCTGTGGTTGGAGGTTACTTATTATCTG
TTTCTGCTGTGTGTGTCAGTTTGCTTGTGTTTTCGTGGGAGTATGATGGG
TACGTTATTATATTTACCATGTTGGTTGCAGCTCTGCTTATTGTTGGTGT
TGC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1250:158672..168124+

>mRNA_H-akashiwo_Contig1250.6.1 ID=mRNA_H-akashiwo_Contig1250.6.1|Name=mRNA_H-akashiwo_Contig1250.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=570bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:158672..168124+ (Heterosigma akashiwo CCMP452)
ATGACCTGTGGCCGATGCATTGTGCGAATGGATCACCACTGCGCCTGGGT
GAACAACTGCATTGGCGCCCGGAACCAGAAGCACTTCCTGCTCTTCCTGC
TGTACCTGCACATTACCTCCCTTTACTCCCTAATCTTCATGACCTACCAC
CTGCTGGTGTGCCGCCACGCCTACTGTAACCTCTGGAGTGACCTTTCGTG
GTGGCTTTTATGGTCCGTATTTGTGCTGTCATTCTTCTCAGTCATGTTTA
CCTTCTTCATGCTACTCAGTCAGGTTCATGCAATGGCAACGGGCCTTGGA
GCAGTAGACCGGATGATGAGCAAACATTTTGCAAAATACAACAGCCAAAA
AGCACTTGACCAGATGCTTGTTCAGCCACTTGGAGTTAAGGACATATGCG
GAAAAGAACGCTGTTTTTTTTGGGCATGCCCTACCAGCGTAACATTTCCC
AATGAACAGCAGGCGCTGGGTTACATATCTTTGTCAGAACAACTAAGGAT
GGAAAGGGGCCACCCAACACCAAAAGGAGCAGCAGGTAGTAGTAAAAAAA
ATGATGACCCAGGGGTGTAG
back to top