mRNA_H-akashiwo_Contig1250.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1250.5.1
Unique NamemRNA_H-akashiwo_Contig1250.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.5.1 vs. uniprot
Match: A0A7S3XVY7_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVY7_HETAK)

HSP 1 Score: 322 bits (826), Expect = 1.790e-108
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 1 
Query:    1 MISNSPRGKEASVASSWGWGQLEQKSQMHDDLEDSQRGSERCSRPPSLSLGAHDGAQNQSGDFKLFGTTEDCKIWCSTDTWGLLMSFTLWAILLYSTSVYVYHSFIVHTFLEMHGVIFCVLVGATLAMHLKVMFTNPGAVPSDAEPPKTKKKRNPSLTGDPK 486
            MISNSPRGKEASVASSWGWGQLEQKSQMHDDLEDSQRGSERCSRPPSLSLGAHDGAQNQSGDFKLFGTTEDCKIWCSTDTWGLLMSFTLWAILLYSTSVYVYHSFIVHTFLEMHGVIFCVLVGATLAMHLKVMFTNPGAVPSDAEPPKTKKKRNPSLTGDPK
Sbjct:    1 MISNSPRGKEASVASSWGWGQLEQKSQMHDDLEDSQRGSERCSRPPSLSLGAHDGAQNQSGDFKLFGTTEDCKIWCSTDTWGLLMSFTLWAILLYSTSVYVYHSFIVHTFLEMHGVIFCVLVGATLAMHLKVMFTNPGAVPSDAEPPKTKKKRNPSLTGDPK 162
[Close]
BLAST of mRNA_H-akashiwo_Contig1250.5.1 vs. uniprot
Match: A0A835YVM4_9STRA (Palmitoyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM4_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-6
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:  193 LFGTTEDCKIWCSTDTW-GLLMSFTLWAILLYSTSVYVYHSFIVHTFLEMHGVIFCVLVGATLAMHLKVMFTNPGAVPSDAEP 438
            LFGT+ED   W ++  W G+  +  +W +  Y+  + ++ S I  T+   H   FC L   +L  HLKVM T+PGAVP +A P
Sbjct:   41 LFGTSEDSISWFNSGDWCGVTTACVVWVLEAYAAFIVLWLSIIARTYSWPHVAAFCALCALSLWCHLKVMTTDPGAVPHNARP 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1250.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XVY7_HETAK1.790e-108100.00Palmitoyltransferase n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YVM4_9STRA1.080e-638.55Palmitoyltransferase n=1 Tax=Tribonema minus TaxID... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1250contigH-akashiwo_Contig1250:157255..158020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr48656
PFAMsDHHC
Model size486
Max annot lvl2759|Eukaryota
KEGG koko:K20029
KEGG TC9.B.37.2
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.4e-05
EggNOG OGsCOG5273@1|root,KOG1311@2759|Eukaryota,2XBBF@2836|Bacillariophyta
EC2.3.1.225
DescriptionBelongs to the DHHC palmitoyltransferase family
Cds size486
COG categoryI
BRITEko00000,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387133.372089-CDS-H-akashiwo_Contig1250:157254..1575231681387133.372089-CDS-H-akashiwo_Contig1250:157254..157523Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 157255..157523 +
1681387133.3810916-CDS-H-akashiwo_Contig1250:157803..1580201681387133.3810916-CDS-H-akashiwo_Contig1250:157803..158020Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1250 157804..158020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1250.5.1prot_H-akashiwo_Contig1250.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1250 157255..158020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1250.5.1

>prot_H-akashiwo_Contig1250.5.1 ID=prot_H-akashiwo_Contig1250.5.1|Name=mRNA_H-akashiwo_Contig1250.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=162bp
MISNSPRGKEASVASSWGWGQLEQKSQMHDDLEDSQRGSERCSRPPSLSL
GAHDGAQNQSGDFKLFGTTEDCKIWCSTDTWGLLMSFTLWAILLYSTSVY
VYHSFIVHTFLEMHGVIFCVLVGATLAMHLKVMFTNPGAVPSDAEPPKTK
KKRNPSLTGDPK
back to top

mRNA from alignment at H-akashiwo_Contig1250:157255..158020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1250.5.1 ID=mRNA_H-akashiwo_Contig1250.5.1|Name=mRNA_H-akashiwo_Contig1250.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=766bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:157255..158020+ (Heterosigma akashiwo CCMP452)
ATGATATCGAACAGCCCACGAGGAAAAGAGGCCTCAGTAGCTTCTTCATG
GGGCTGGGGGCAGCTGGAGCAAAAGTCGCAAATGCACGACGATCTTGAAG
ATTCTCAAAGGGGCAGCGAACGTTGTTCCAGGCCGCCTTCACTGAGCTTG
GGAGCGCATGATGGGGCTCAAAATCAGTCCGGTGACTTCAAACTTTTTGG
CACCACGGAGGATTGCAAGATATGGTGCAGCACGGACACCTGGGGGCTGC
TTATGTCATTTACTCTCTGGTACTCTCGCCCTTAACTGCCGCAAAAATAA
AAAATAAACTAATAATAATAATAATATTGTGTTGTTCTACATGACTAAAT
AATAATAATAATAATAAATAAACAAATACACTGCCAACCACGGTTGTAAT
AAAACTGTTGAAATGAATAAGTCATGCAGCTATACTGCTTCAAAATGTTC
AGAGGTGTATGATAATTTTTACCCTAGTGGTGCTCCTTCATCCTGCTGGT
GCCGTGTGCTGCTTTTTGTTTCTGTACATTTTTTTTTTTCATTCTCTAGG
GCCATCCTGCTGTACAGCACCAGCGTCTATGTCTATCACTCATTTATAGT
ACACACATTCTTGGAGATGCACGGGGTCATCTTCTGTGTGCTTGTAGGGG
CAACACTTGCAATGCACCTTAAAGTTATGTTCACAAACCCTGGTGCAGTC
CCAAGCGATGCAGAACCACCCAAGACCAAAAAAAAGCGCAACCCATCGCT
GACGGGCGACCCCAAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1250:157255..158020+

>mRNA_H-akashiwo_Contig1250.5.1 ID=mRNA_H-akashiwo_Contig1250.5.1|Name=mRNA_H-akashiwo_Contig1250.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=486bp|location=Sequence derived from alignment at H-akashiwo_Contig1250:157255..158020+ (Heterosigma akashiwo CCMP452)
ATGATATCGAACAGCCCACGAGGAAAAGAGGCCTCAGTAGCTTCTTCATG
GGGCTGGGGGCAGCTGGAGCAAAAGTCGCAAATGCACGACGATCTTGAAG
ATTCTCAAAGGGGCAGCGAACGTTGTTCCAGGCCGCCTTCACTGAGCTTG
GGAGCGCATGATGGGGCTCAAAATCAGTCCGGTGACTTCAAACTTTTTGG
CACCACGGAGGATTGCAAGATATGGTGCAGCACGGACACCTGGGGGCTGC
TTATGTCATTTACTCTCTGGGCCATCCTGCTGTACAGCACCAGCGTCTAT
GTCTATCACTCATTTATAGTACACACATTCTTGGAGATGCACGGGGTCAT
CTTCTGTGTGCTTGTAGGGGCAACACTTGCAATGCACCTTAAAGTTATGT
TCACAAACCCTGGTGCAGTCCCAAGCGATGCAGAACCACCCAAGACCAAA
AAAAAGCGCAACCCATCGCTGACGGGCGACCCCAAG
back to top