mRNA_H-akashiwo_Contig125.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.9.1
Unique NamemRNA_H-akashiwo_Contig125.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A6V1UB73_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UB73_HETAK)

HSP 1 Score: 285 bits (729), Expect = 1.860e-97
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRFG 420
            MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRFG
Sbjct:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRFG 140          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A836CHD0_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD0_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.430e-45
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGN--ITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRF 417
            M+TG+ V+D V  QF+ FKL++ P N R+Y YKI D    I IDT G R+AT+DDFC    P E +YGLFDL+Y+T+DGR +SKLV ++W+PD++ V+ KM+YAGS  ++K  LVGV VH+ A DASE+E+   L + +R 
Sbjct:    1 MSTGIIVNDEVVTQFNLFKLKKEPCNYRYYVYKISDNGQEIVIDTFGERDATYDDFCSKLPPKECRYGLFDLDYDTKDGRSSSKLVFIAWTPDEAAVKNKMMYAGSKESIKGALVGVGVHLQACDASELELATILSSVQRI 141          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A4D9D6Y0_9STRA (ADF-H domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Y0_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.740e-45
Identity = 69/139 (49.64%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRF 417
            M+TGV   D V + F +FKLQRAPYN+R+  Y+I++  I I+  G RE  W+DFC +    + +Y + D+E+ET DGRPTSK++ LSW+PD + VR KM+YAGS  A+K  LVGV +H+ ATD SE+E    L + +RF
Sbjct:    1 MSTGVEAADEVGSSFSQFKLQRAPYNVRYIVYEIKEDKIQIEKQGAREKNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPSVKRF 139          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A448Z884_9STRA (ADF-H domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z884_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.760e-42
Identity = 68/130 (52.31%), Postives = 96/130 (73.85%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNIT-IDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEV 387
            M++GV VDD +   F+EFK+Q+    LRFYTYKIED  I  ID  GP+E+T+DDFC  F   EP+YG+ DLE+ET+DGRPTSKL+ +SW+PD   +R KM+Y+ S  ++K+ L GV + I ATD++E+++
Sbjct:    1 MSSGVQVDDEIPKLFEEFKIQK---KLRFYTYKIEDKKIIKIDVVGPKESTYDDFCSAFPENEPRYGVIDLEFETKDGRPTSKLIFISWNPDSGKIRDKMIYSSSKESIKAALNGVGIFINATDSAELDL 127          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: B8C0E9_THAPS (The actin binding protein cofilin-like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0E9_THAPS)

HSP 1 Score: 145 bits (366), Expect = 3.890e-42
Identity = 72/134 (53.73%), Postives = 95/134 (70.90%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGN-ITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIAL 399
            MATGV VDD VSA F +FKL + PY LR++ Y+I++   I I+  G    T++DF E     + +YGL D+E+ET DGRPTSKLV +SW+PD ++VR KMLY+GS  ALKS LVGV +HI ATD SE++   A+
Sbjct:    1 MATGVAVDDEVSASFQKFKLGQEPYKLRYFVYEIKNKKTIVIEKQGELSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKLVFISWNPDTASVRPKMLYSGSKEALKSALVGVGIHINATDHSELDFETAI 134          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A067C057_SAPPC (ADF-H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C057_SAPPC)

HSP 1 Score: 144 bits (364), Expect = 8.060e-42
Identity = 73/142 (51.41%), Postives = 97/142 (68.31%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIE-DGNITIDTTGPREATWDDFCE--NFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRF 417
            M++GVGV D V  +F++FKLQ+APYN R++ YKIE D  I I+  G R  T+DDF    N    E +YGL DL++ T+DGRPTSKLV +SWSPD + V+ KMLYA S  A+K  LVGV ++++ATDASE+      D   +F
Sbjct:    1 MSSGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGVSKF 142          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A1V9ZGW8_9STRA (Actin-depolymerizing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGW8_9STRA)

HSP 1 Score: 142 bits (359), Expect = 4.490e-41
Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNITIDTTGPREATWDDFCENFQP--GEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRF 417
            M++GVGV D V ++F++FKLQRAPYN R++ YKIE   I I+  G R  +++DF         E +YGL DL++ T+DGRPTSKLV +SWSPD S ++ KM+YA S  A+K  LVGV ++++ATDASE+      D   +F
Sbjct:    1 MSSGVGVHDDVISEFNDFKLQRAPYNFRYFIYKIEHDEIVIEHRGERSESYEDFANKLLEIQSECRYGLIDLDFTTKDGRPTSKLVFISWSPDTSKIKSKMVYASSKEAIKRCLVGVGIYLSATDASELAFSAIEDGVSKF 141          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A7S1D6V8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6V8_CYCTE)

HSP 1 Score: 142 bits (357), Expect = 9.040e-41
Identity = 71/130 (54.62%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGN-ITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEV 387
            MATGV V D VS  F+EFKLQR  + LR++ Y IE+   I I+  G R  T+DDF  +    + +YGL DLE+ET DGRPTSK+V +SW+PD ++VR KMLY+GS  A+KSVL GV +HI ATD SE+++
Sbjct:    1 MATGVIVGDDVSFAFNEFKLQRGDFKLRYFIYSIENKKTIVIEKQGERSKTYDDFVADLPENDCRYGLIDLEFETDDGRPTSKIVFISWNPDTASVRPKMLYSGSKEAIKSVLTGVGIHINATDYSELDL 130          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: A0A1V9ZSG9_9STRA (Actin-depolymerizing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSG9_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.400e-40
Identity = 69/142 (48.59%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGN-ITIDTTGPREATWDDFCENFQP--GEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRF 417
            M++GVGV D V  +F++FKLQRAPYN R++ YKIE+ + + I+  G R  T++DF    +    E +YGL DL++ T+DGRPTSKLV +SWSPD + ++ KMLYA S  A+K  LVGV ++++ATDASE+ +    D   +F
Sbjct:    3 MSSGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGVSKF 144          
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Match: K0SV25_THAOC (ADF-H domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV25_THAOC)

HSP 1 Score: 141 bits (355), Expect = 1.820e-40
Identity = 67/129 (51.94%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGN-ITIDTTGPREATWDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKMLYAGSVAALKSVLVGVTVHITATDASEME 384
            M+TGV V D VS  F++FKL + PY LR++ Y+I++   I I + G R  T++DF E     + +YGL D+E+ET DGRPTSK+V +SW+PD +++R KMLY+GS  ALKS LVGV +HI ATD SE++
Sbjct:    1 MSTGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELD 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1UB73_HETAK1.860e-97100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CHD0_9STRA2.430e-4551.77ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
A0A4D9D6Y0_9STRA4.740e-4549.64ADF-H domain-containing protein n=2 Tax=Monodopsid... [more]
A0A448Z884_9STRA1.760e-4252.31ADF-H domain-containing protein n=1 Tax=Pseudo-nit... [more]
B8C0E9_THAPS3.890e-4253.73The actin binding protein cofilin-like protein n=1... [more]
A0A067C057_SAPPC8.060e-4251.41ADF-H domain-containing protein n=2 Tax=Saprolegni... [more]
A0A1V9ZGW8_9STRA4.490e-4148.94Actin-depolymerizing factor n=1 Tax=Thraustotheca ... [more]
A0A7S1D6V8_CYCTE9.040e-4154.62Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1V9ZSG9_9STRA1.400e-4048.59Actin-depolymerizing factor n=1 Tax=Achlya hypogyn... [more]
K0SV25_THAOC1.820e-4051.94ADF-H domain-containing protein n=1 Tax=Thalassios... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:221095..221517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps4830
PFAMsCofilin_ADF
Model size423
Max annot lvl2836|Bacillariophyta
KEGG koko:K05765
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.37e-43
EggNOG OGsKOG1735@1|root,KOG1735@2759|Eukaryota,2XCQD@2836|Bacillariophyta
Ec32 ortholog descriptionActin-depolymerising factor homology domain
Ec32 orthologEc-26_004230.1
DescriptionBelongs to the actin-binding proteins ADF family
Cds size423
COG categoryZ
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.2158887-CDS-H-akashiwo_Contig125:221094..2215171681387132.2158887-CDS-H-akashiwo_Contig125:221094..221517Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 221095..221517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.9.1prot_H-akashiwo_Contig125.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 221095..221517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.9.1

>prot_H-akashiwo_Contig125.9.1 ID=prot_H-akashiwo_Contig125.9.1|Name=mRNA_H-akashiwo_Contig125.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=141bp
MATGVGVDDAVSAQFDEFKLQRAPYNLRFYTYKIEDGNITIDTTGPREAT
WDDFCENFQPGEPKYGLFDLEYETQDGRPTSKLVLLSWSPDDSNVRKKML
YAGSVAALKSVLVGVTVHITATDASEMEVGIALDAARRFG*
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mRNA from alignment at H-akashiwo_Contig125:221095..221517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.9.1 ID=mRNA_H-akashiwo_Contig125.9.1|Name=mRNA_H-akashiwo_Contig125.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig125:221095..221517- (Heterosigma akashiwo CCMP452)
ATGGCAACTGGCGTTGGAGTTGATGATGCTGTTTCAGCGCAGTTCGATGA ATTCAAGCTGCAGCGAGCTCCTTACAACTTGAGATTCTACACTTACAAAA TTGAAGATGGTAACATCACAATTGATACAACTGGCCCTAGAGAAGCCACA TGGGACGATTTCTGCGAGAATTTCCAACCGGGCGAGCCAAAATATGGATT ATTTGACCTGGAGTATGAAACTCAGGATGGGAGACCGACCAGCAAGCTGG TTTTGCTTTCTTGGTCCCCAGACGATTCTAATGTAAGAAAAAAAATGTTA TATGCTGGATCAGTTGCCGCCCTCAAGAGTGTTTTAGTCGGAGTAACTGT CCATATCACAGCGACTGATGCTTCTGAAATGGAAGTCGGCATAGCTCTGG ATGCAGCAAGGCGCTTTGGATAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:221095..221517-

>mRNA_H-akashiwo_Contig125.9.1 ID=mRNA_H-akashiwo_Contig125.9.1|Name=mRNA_H-akashiwo_Contig125.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig125:221095..221517- (Heterosigma akashiwo CCMP452)
ATGGCAACTGGCGTTGGAGTTGATGATGCTGTTTCAGCGCAGTTCGATGA
ATTCAAGCTGCAGCGAGCTCCTTACAACTTGAGATTCTACACTTACAAAA
TTGAAGATGGTAACATCACAATTGATACAACTGGCCCTAGAGAAGCCACA
TGGGACGATTTCTGCGAGAATTTCCAACCGGGCGAGCCAAAATATGGATT
ATTTGACCTGGAGTATGAAACTCAGGATGGGAGACCGACCAGCAAGCTGG
TTTTGCTTTCTTGGTCCCCAGACGATTCTAATGTAAGAAAAAAAATGTTA
TATGCTGGATCAGTTGCCGCCCTCAAGAGTGTTTTAGTCGGAGTAACTGT
CCATATCACAGCGACTGATGCTTCTGAAATGGAAGTCGGCATAGCTCTGG
ATGCAGCAAGGCGCTTTGGATAA
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