mRNA_H-akashiwo_Contig125.43.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.43.1
Unique NamemRNA_H-akashiwo_Contig125.43.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:1519641..1520837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size542
Hectar predicted targeting categoryother localisation
Exons3
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.06344-UTR-H-akashiwo_Contig125:1519640..15196701681387132.06344-UTR-H-akashiwo_Contig125:1519640..1519670Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig125 1519641..1519670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.0803647-CDS-H-akashiwo_Contig125:1519670..15200501681387132.0803647-CDS-H-akashiwo_Contig125:1519670..1520050Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 1519671..1520050 +
1681387132.0923812-CDS-H-akashiwo_Contig125:1520329..15203731681387132.0923812-CDS-H-akashiwo_Contig125:1520329..1520373Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 1520330..1520373 +
1681387132.1018455-CDS-H-akashiwo_Contig125:1520751..15208371681387132.1018455-CDS-H-akashiwo_Contig125:1520751..1520837Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 1520752..1520837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.43.1prot_H-akashiwo_Contig125.43.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 1519671..1520837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.43.1

>prot_H-akashiwo_Contig125.43.1 ID=prot_H-akashiwo_Contig125.43.1|Name=mRNA_H-akashiwo_Contig125.43.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=170bp
MESLVLAAKSPEEQGRKDDSAGQCSKANTMMKGRKITICIPQIKTQFRVG
WFEGTSSDDIKETIGRKVFRLIEQNLGGVQLRKKEILLDFWLEDEEGDEI
VLSNTIADGAVFTFCSNSFFKDISPLVYVTDDALVHVLAYLDSGRWRRPR
RPTSGCTRWRRPSRCGWPSS
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mRNA from alignment at H-akashiwo_Contig125:1519641..1520837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.43.1 ID=mRNA_H-akashiwo_Contig125.43.1|Name=mRNA_H-akashiwo_Contig125.43.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1519641..1520837+ (Heterosigma akashiwo CCMP452)
GTTGGAGATGATCAGAAGCAGACGATAAGAATGGAGAGCCTTGTCCTTGC
GGCAAAAAGCCCCGAGGAGCAAGGGCGAAAGGATGATTCTGCAGGCCAGT
GCTCGAAAGCTAACACAATGATGAAGGGACGGAAAATCACAATTTGTATT
CCCCAAATCAAGACTCAGTTTCGAGTTGGCTGGTTTGAAGGGACCTCAAG
CGATGACATCAAAGAAACCATCGGGAGGAAAGTTTTCCGATTGATTGAGC
AAAATCTGGGAGGAGTTCAGTTGAGAAAAAAGGAAATACTTCTTGACTTT
TGGCTGGAAGATGAAGAAGGGGATGAAATCGTCCTCTCTAACACGATTGC
CGATGGTGCAGTTTTCACGTTTTGTTCAAATTCGTTCTTTAAAGACATCT
CCCCGCTTGTGTAAGTCCTGATAACTACAGTAGTAGTTGTCGTTACATGC
GATTTTGTTGCTGAAGCTTCGTTGTATCTGTCATTTGAATAGTGCAGCAG
TGCCGCACCACCTTGCCACTGGGTGACCGATAAATGCACAGCATAGTATA
TTTTGTATATACCTACATCGATGGAAGACGCAGATGCTGGCTAAAGTGGT
TTGGGCACGCATTGCTCCACACCATGGATTGGCCTCGTACGGTATCCTCT
GGGGCGTCCATGGTCGCCCCCCCCACCCCCCTTCTCCAGGTACGTGACGG
ACGACGCCCTTGTGCATGTGCTGGCCTACCTCGGTAAGGCGGGCGGATGG
ATATTTCGCGTCATAAAGTCTTCGAATACATATAATCCTGATGTCCTCTA
GCATTCCTGAACTATCAAATATACATATAAGGGGGCTGGAGAGGCTCATC
ATTTGCTAGAAGATACATAATTGTTCCAATCCATCGTTGGTGATCATTTT
TCAGTAATATATATATATAATAACTGAATGTTACTGAATTAAGAGCTGGA
GAGGCATGTCATTTTCTTGTTGTGGTTGCCATCGTTCTTGATTCAGTATA
CTGTGTCAATCAATCCTAAAACAGCCGCCAAGATAGCACCAAAACCAACG
AACCCGCCCGCCCGCCCGCCCGCGTCGCCGTCGCGCCACAGGGCGGCGGG
CGGCGCAAGAGACAGCGGTCGCTGGCGCAGGCCTCGGCGGCCAACAAGCG
GCTGCACCCGCTGGCGCAGGCCGAGCCGCTGTGGGTGGCCTTCTTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:1519641..1520837+

>mRNA_H-akashiwo_Contig125.43.1 ID=mRNA_H-akashiwo_Contig125.43.1|Name=mRNA_H-akashiwo_Contig125.43.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=510bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1519641..1520837+ (Heterosigma akashiwo CCMP452)
ATGGAGAGCCTTGTCCTTGCGGCAAAAAGCCCCGAGGAGCAAGGGCGAAA
GGATGATTCTGCAGGCCAGTGCTCGAAAGCTAACACAATGATGAAGGGAC
GGAAAATCACAATTTGTATTCCCCAAATCAAGACTCAGTTTCGAGTTGGC
TGGTTTGAAGGGACCTCAAGCGATGACATCAAAGAAACCATCGGGAGGAA
AGTTTTCCGATTGATTGAGCAAAATCTGGGAGGAGTTCAGTTGAGAAAAA
AGGAAATACTTCTTGACTTTTGGCTGGAAGATGAAGAAGGGGATGAAATC
GTCCTCTCTAACACGATTGCCGATGGTGCAGTTTTCACGTTTTGTTCAAA
TTCGTTCTTTAAAGACATCTCCCCGCTTGTGTACGTGACGGACGACGCCC
TTGTGCATGTGCTGGCCTACCTCGACAGCGGTCGCTGGCGCAGGCCTCGG
CGGCCAACAAGCGGCTGCACCCGCTGGCGCAGGCCGAGCCGCTGTGGGTG
GCCTTCTTCC
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