mRNA_H-akashiwo_Contig125.32.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.32.1
Unique NamemRNA_H-akashiwo_Contig125.32.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig125.32.1 vs. uniprot
Match: A0A7S3XV50_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV50_HETAK)

HSP 1 Score: 80.5 bits (197), Expect = 6.720e-17
Identity = 50/85 (58.82%), Postives = 51/85 (60.00%), Query Frame = -2 
Query:  300 LDQLDHHQLELMVGLAVDDML---GPAVDELDQDH----------------------------QLSHQVDAEANDQYGKSSHKVL 461
            LDQLDHHQLELMVGLAVD  +   G AVDELDQDH                            QLSHQVDAEANDQYGKSSHKVL
Sbjct:   17 LDQLDHHQLELMVGLAVDSRIRRAGGAVDELDQDHHQLQXXXXXXXXXXDMLGPXXXXXXXXXQLSHQVDAEANDQYGKSSHKVL 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XV50_HETAK6.720e-1758.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:1061954..1062415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size464
Hectar predicted targeting categorysignal peptide
Exons1
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.1696653-UTR-H-akashiwo_Contig125:1061953..10620731681387132.1696653-UTR-H-akashiwo_Contig125:1061953..1062073Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig125 1061954..1062073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.1819754-CDS-H-akashiwo_Contig125:1062073..10624151681387132.1819754-CDS-H-akashiwo_Contig125:1062073..1062415Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 1062074..1062415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.32.1prot_H-akashiwo_Contig125.32.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 1062074..1062415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.32.1

>prot_H-akashiwo_Contig125.32.1 ID=prot_H-akashiwo_Contig125.32.1|Name=mRNA_H-akashiwo_Contig125.32.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
MKASLFLQVGFLLVACLWNGAHGRISSPSQFHEQAFKGLARHLGADEEGL
RDLISSHPSYSTLCDDFPYWSFASASTWWDSWWSWSSSSTAGPSMSSTAS
PTMSSSWWWSSWSS
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mRNA from alignment at H-akashiwo_Contig125:1061954..1062415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.32.1 ID=mRNA_H-akashiwo_Contig125.32.1|Name=mRNA_H-akashiwo_Contig125.32.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=462bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1061954..1062415+ (Heterosigma akashiwo CCMP452)
GAAAGATGCAGATGCAGATGCAGATAGATGCATGATCCAAAGCACTCTTT
CTCTTTCACTCTCACCACAAACCTCAAATCCGAGCAGCACTATTGAATTT
TGCTCTTACTTTTTCTTCAGATGAAAGCTTCATTATTTCTTCAGGTTGGC
TTTTTGCTCGTGGCTTGCTTGTGGAATGGCGCTCATGGCCGCATTTCATC
CCCCAGCCAATTTCACGAGCAGGCGTTCAAAGGCCTCGCCAGGCACTTGG
GTGCTGACGAAGAGGGTCTTCGAGATCTAATCTCCAGCCACCCGAGCTAC
AGCACTTTGTGTGATGATTTTCCGTACTGGTCATTTGCTTCCGCATCGAC
TTGGTGGGATAGCTGGTGGTCCTGGTCAAGCTCGTCGACCGCCGGTCCCA
GCATGTCATCGACTGCCAGTCCAACCATGAGCTCCAGCTGGTGGTGGTCG
AGCTGGTCGAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:1061954..1062415+

>mRNA_H-akashiwo_Contig125.32.1 ID=mRNA_H-akashiwo_Contig125.32.1|Name=mRNA_H-akashiwo_Contig125.32.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1061954..1062415+ (Heterosigma akashiwo CCMP452)
ATGAAAGCTTCATTATTTCTTCAGGTTGGCTTTTTGCTCGTGGCTTGCTT
GTGGAATGGCGCTCATGGCCGCATTTCATCCCCCAGCCAATTTCACGAGC
AGGCGTTCAAAGGCCTCGCCAGGCACTTGGGTGCTGACGAAGAGGGTCTT
CGAGATCTAATCTCCAGCCACCCGAGCTACAGCACTTTGTGTGATGATTT
TCCGTACTGGTCATTTGCTTCCGCATCGACTTGGTGGGATAGCTGGTGGT
CCTGGTCAAGCTCGTCGACCGCCGGTCCCAGCATGTCATCGACTGCCAGT
CCAACCATGAGCTCCAGCTGGTGGTGGTCGAGCTGGTCGAGC
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