mRNA_H-akashiwo_Contig125.31.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.31.1
Unique NamemRNA_H-akashiwo_Contig125.31.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:1040151..1040577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size429
Hectar predicted targeting categorymitochondrion
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.1296213-CDS-H-akashiwo_Contig125:1040150..10404621681387132.1296213-CDS-H-akashiwo_Contig125:1040150..1040462Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 1040151..1040462 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.139535-UTR-H-akashiwo_Contig125:1040462..10405771681387132.139535-UTR-H-akashiwo_Contig125:1040462..1040577Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig125 1040463..1040577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.31.1prot_H-akashiwo_Contig125.31.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 1040151..1040462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.31.1

>prot_H-akashiwo_Contig125.31.1 ID=prot_H-akashiwo_Contig125.31.1|Name=mRNA_H-akashiwo_Contig125.31.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=104bp
SSTLVFHFKTKGITRNLLLKRQLLALSTSGLTHERKYFWEVAPEEEIPIT
GLSIFTASSEAFDLRRPHEGVTCEVSRFTFTDDGGDDNDVLFEIQPLRKT
FTD*
back to top

mRNA from alignment at H-akashiwo_Contig125:1040151..1040577+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.31.1 ID=mRNA_H-akashiwo_Contig125.31.1|Name=mRNA_H-akashiwo_Contig125.31.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=427bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1040151..1040577+ (Heterosigma akashiwo CCMP452)
TCTTCAACGCTGGTATTCCATTTCAAAACAAAAGGTATTACAAGAAACTT
GCTGCTGAAGCGGCAGCTTCTAGCCCTTAGTACCAGTGGTTTGACTCATG
AGCGGAAATATTTTTGGGAGGTTGCCCCAGAGGAGGAAATTCCAATAACG
GGTTTATCCATCTTCACCGCTTCTTCTGAGGCCTTTGATTTGAGAAGGCC
TCATGAGGGTGTTACTTGTGAGGTGAGCCGTTTTACTTTTACCGATGATG
GCGGTGATGATAATGATGTTTTATTTGAGATCCAGCCACTCAGAAAGACT
TTCACTGATTGATGTACTTTCTAGTGTGTAAATGGATGTTGCAATTCTCT
TTGTCCTGGAGAGGCGTATCATTTGCTAGAAGATCAATTAGTTGTTCCGT
ACCATCAGTGATCACTTTCATTTCAAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig125:1040151..1040577+

>mRNA_H-akashiwo_Contig125.31.1 ID=mRNA_H-akashiwo_Contig125.31.1|Name=mRNA_H-akashiwo_Contig125.31.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=312bp|location=Sequence derived from alignment at H-akashiwo_Contig125:1040151..1040577+ (Heterosigma akashiwo CCMP452)
TCTTCAACGCTGGTATTCCATTTCAAAACAAAAGGTATTACAAGAAACTT
GCTGCTGAAGCGGCAGCTTCTAGCCCTTAGTACCAGTGGTTTGACTCATG
AGCGGAAATATTTTTGGGAGGTTGCCCCAGAGGAGGAAATTCCAATAACG
GGTTTATCCATCTTCACCGCTTCTTCTGAGGCCTTTGATTTGAGAAGGCC
TCATGAGGGTGTTACTTGTGAGGTGAGCCGTTTTACTTTTACCGATGATG
GCGGTGATGATAATGATGTTTTATTTGAGATCCAGCCACTCAGAAAGACT
TTCACTGATTGA
back to top