mRNA_H-akashiwo_Contig125.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.2.1
Unique NamemRNA_H-akashiwo_Contig125.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig125.2.1 vs. uniprot
Match: A0A7S4DD23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD23_HETAK)

HSP 1 Score: 109 bits (273), Expect = 1.460e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 KNKGRSTSIKDRRTSKSFHELFLEERDEGSNSSCEDTLQYDNHEQNKENNIYQISG 168
            KNKGRSTSIKDRRTSKSFHELFLEERDEGSNSSCEDTLQYDNHEQNKENNIYQISG
Sbjct:   94 KNKGRSTSIKDRRTSKSFHELFLEERDEGSNSSCEDTLQYDNHEQNKENNIYQISG 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DD23_HETAK1.460e-28100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:49847..53205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size170
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387131.8183415-CDS-H-akashiwo_Contig125:49846..498761681387131.8183415-CDS-H-akashiwo_Contig125:49846..49876Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 49847..49876 +
1681387131.8305151-CDS-H-akashiwo_Contig125:53066..532041681387131.8305151-CDS-H-akashiwo_Contig125:53066..53204Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 53067..53204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.2.1prot_H-akashiwo_Contig125.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 49847..53204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.2.1

>prot_H-akashiwo_Contig125.2.1 ID=prot_H-akashiwo_Contig125.2.1|Name=mRNA_H-akashiwo_Contig125.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=56bp
KNKGRSTSIKDRRTSKSFHELFLEERDEGSNSSCEDTLQYDNHEQNKENN
IYQISG
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mRNA from alignment at H-akashiwo_Contig125:49847..53205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.2.1 ID=mRNA_H-akashiwo_Contig125.2.1|Name=mRNA_H-akashiwo_Contig125.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3359bp|location=Sequence derived from alignment at H-akashiwo_Contig125:49847..53205+ (Heterosigma akashiwo CCMP452)
AAGAATAAGGGCAGATCTACCTCAATTAAGGTACTTGCTGCGGATATCTG
TGCTTTGTGAAATGTTCACTCTGGTTTTTAAGTTATGCTATGATACTGCA
GCATGTGTCTGTGTTTGTCCGCAGTTAGAAATTAATAGAATTGGTGGGTT
TTAGAAAAATAAGTATACAGAAGGTGCCGCCAGTGAAAAGTGCCAGCCGT
GCCCAATGTCCCTTCACCTGCTATGGTGAAGGAAACATGGTGATTTCTTG
GTCATTCAACTTGGCAGCCAAGATTTTACTACATAAATTGTTGTAGGATT
TCGCACACCCATTGGTGGGGTGGGTCGATGTGCAAATGATGTCGCATGGG
CCTGGGTTGAAGGATTCGTGCAATTGATTTCAAGGTGTGGTTGACGGTCG
GAATCCAGGGGTGGTTTGGTATGCAGTTGAACGTCCGGGGTGGCGAGGAA
GACTATTCCGTCAGTCTGGAACAAGAAGAGGAAGAGTTGGGTGGCAAGGG
TCGGGCGAAGAGGGTAAGGAAAAGGAGGGTTCGAATCTTGTGATGTACAT
TTGTGTTTTCCATTCTTTTTCTTCTGTTTTGTGCTGTTACCAGCAGGGAG
GGTTGGAAGGAGGAGGAGGAGGACAGAGGAGGGGTGTAACCGTTACCGTT
TTTTGTCTCATCGGCTAATGGTGTTGTTATGCTGGCTGGACCACCTTCAT
CATTACCTTGATGGGACCTAGTTAGAGTTTGGCCAACTTGGTGACTCTGT
GAAGAAGGCATAACTTTATGTCGAAACGTCGGGAGCTGAAGAGGTGTATC
ATTTGCTAGAAGAAGATCAATGATTAATTGTTCCGTACCATCAGTGATGA
CTTTCATTTCAATAAAAAATTAACATCATTATCATCATCCACATCATCAT
GGTAATAGTCCTCTCTTGGTGGCCATAATTGGCTGCCCAAATGGTCTCAG
CTTTGAGGTTGTTTGTAGGAAATGCAGCATCATCAAGCACCCACAGAGGT
GCTTCAGGAAATGCCCGGTGGAAGTTTGGCGGCGTGGGGTAGGGGGTTGC
AGCGTGGAGGAGGGCAGGGCCTTCTTCATGGAGCTATTAAAGCCATGGCG
GCTCTCGACAGAGGAGCTTGAGAGTGTTTGGGCAGATTGGAAGAGCCAGT
TGGGGCTCTGAGCTGTTTCGCACCGCCCCAGCCGGGAGGGGTGTGTGCTG
GGGGGCTGTCGTTTCTGCATTGGGTTGAGTATACTGGGGGTAAAAGTACG
AAATTGAATTGGGGAAATTGGCAAATGGGTAGGTGTGCATTTGGAAATCA
GTGCAGGCTAGCATCTTAATAAAGTTTTGGTGATGAACAAGAGAATGAGA
AGTGGGATCTATAAGCGGAAGGGTCCGTGTATGGAGGCCGGGGCTTTGAT
CCTTGCAACGTTGTTGCAATGGCATCCGTGCAAGTCCGCTTGCCCAGTGA
GCAGCACCACAGCCCGCAGCAACCCGCACGCATTTGGTTTGTTTGTGCTT
GAGAAGAAGTGGAGGTTGGAAACTTGAGAAGAAGTGGAGGCTCTGACACA
CGCACCCCACCACGTTAACTCCAATGTCGACTAAATAGCACCAGCACCAG
CAGAAACTAGGAGAAGACACACCTTTTTACAGAAGGGGTATGGCGGAAAG
TGGTAGAGTGAGGTGGAAGGGTCTGCGTATAGAAGCTAGGGGCTCAGCCC
CGAAAGCGATTTGAAAGGCTAGACCTTAAACCAAATTTAATATCATCATC
ATCATCATACTTATGCTACTAATCCCACTTTTGATCCTATGGAATAAATC
AGAACTAAAACGGTTATGGGCGTTTTCAGAGCTTTCCCTGTGGCTTCGAA
TCGTAGTACGGGTTTGGTGAGCTGTTATACTCCGCCCGGAGCTGAGCTGG
TATACTCGCTTGCGTGACGGCTTGGTGAGCTGTTATACTCCTAGCAAATC
GCTGCTGGCATGCCCAACGGGAACAAAACAGAGGTTACATGCCTTTTCGA
CTGTGGATGGCGTGATGGTTGGCTTGGATGACTGTGGAAGATCTGTTTTT
TCGGTGTTATGGGGGGCTTTTTGACCAATCGTGCCTCAGTTGGATCTCCT
TACTATTGGTCGGTGAAATTTCATTCTCTGAAAACTGAGAGGCTAGTTGC
GCTTGCAACCGCCATTGACAATTCTGGCTTTTGCAAACATAGAAAACGTG
AGCCGAGTTTGCCTTCAAATCGTGGAAGATTGTACTACCTTGATTCAGCT
TGGTACAGCACACCATGTATACTTTTTTTTTATTCAAGGGTGCCTTGAAC
CACTGCATTTTCTGCTGGATCAGTATGCCTATCCCTTTTCTTCTGGGATC
ACCGGTAATTTTTGAAATGAAGGGGCTTATGATGATGTTTCTTGAAGCAT
GGGGAGGCTTTCTGGCATGGAGGGGCTTTTTGAACTGGAGGGTTGACTCA
ACTCTCTGGCTTGTGAAGCACAGTTCACTTGATAGGCTGGATCGGCCTAT
ATAGGAGGGGACTTCACTCACTTGCTGCACTCCCTTGATGAATGTGGAGG
GGCATTGTTGCAATGGCATTCATGCAAGTCCGCTTGCCCAGTGAGCTGCA
CCACGGCCCGTAGTAACCCACACGCATTTAGTTTGTTTGTGCTTAAGAAA
AAGTGGAGGTTGGAAACTTGAGAAGAAGTGGGGGCTCTGACACACGCACA
TCACCACGTAAACTTCAATGTAGACTAGATAGCACCAATAGCAGCAGAAA
CTAGGAAAAGAGGGTCAGGCCACCTCAACAGCACACACCTTTGTACATAG
TACTAATCCCACTTGATCCAATGGAATAAATCAGAACTAAAACGTGTAAA
TCTACTCGTCTATTGCATCCTAGCTAATAGTAGTATCTGCCTCTCCCCAA
AGCAGTTTGAACGGCAAGCCTGGAAACTGAATCTAACACCATCACCAAGT
CTCAGATATTATGTACCTCTAGTTGCCTCATCCTGATGAGTCATCGTGTA
TGTATAATCCTATATATATATATATATATATATATATACGCTTGATGAAG
CTTTTCTAAAATATGTTTTCCACTTCCTCCTTTTTCCTACTTGTCTAGTT
GAATCATATATCAATCATGCTTCAACTTCTTCTTCTTGTCATTATATGAA
CTTCTTACTTATTTCAGTATAAGTATATATATATATATATTTGACTTTTT
CTTTTGCTGGGAAACTGAAGGATCGACGAACATCAAAAAGTTTTCATGAA
CTTTTCTTGGAAGAAAGGGATGAAGGGAGTAATTCATCTTGTGAAGATAC
CCTCCAGTACGACAATCATGAACAAAATAAGGAAAATAACATATATCAGA
TATCAGGCA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:49847..53205+

>mRNA_H-akashiwo_Contig125.2.1 ID=mRNA_H-akashiwo_Contig125.2.1|Name=mRNA_H-akashiwo_Contig125.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=168bp|location=Sequence derived from alignment at H-akashiwo_Contig125:49847..53205+ (Heterosigma akashiwo CCMP452)
AAGAATAAGGGCAGATCTACCTCAATTAAGGATCGACGAACATCAAAAAG
TTTTCATGAACTTTTCTTGGAAGAAAGGGATGAAGGGAGTAATTCATCTT
GTGAAGATACCCTCCAGTACGACAATCATGAACAAAATAAGGAAAATAAC
ATATATCAGATATCAGGC
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