mRNA_H-akashiwo_Contig125.18.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.18.1
Unique NamemRNA_H-akashiwo_Contig125.18.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A7R9YCC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCC1_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.390e-43
Identity = 86/153 (56.21%), Postives = 108/153 (70.59%), Query Frame = 3
Query:  201 YMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCGGVF 659
            YM  L KLV+FS  +HQ+ FS+ S LPFAIGQVQDAGLIFL+HMA  +A   A Q   P+T VAT  V   L+TA LG+ALVV GRL+  R+VS LP+PVIGGYLAFIG+FC+EAG+ +C   +++ P  WL +L  KNL L  P +  G +F
Sbjct:   72 YMPALCKLVLFSCAMHQLVFSVGSGLPFAIGQVQDAGLIFLAHMARNIAHRTADQS--PETTVATAVVCTALSTALLGLALVVFGRLRWARFVSYLPVPVIGGYLAFIGFFCIEAGLGLCVGQSLSKPEAWLSLLEPKNLILTIPCVATGLLF 222          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A7S1BZH2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZH2_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.640e-42
Identity = 85/154 (55.19%), Postives = 115/154 (74.68%), Query Frame = 3
Query:  213 LSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAA---QGEGPK-TIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCGGVFS 662
            L+KL + SSM+HQ+SFS  S+LPFAIGQVQDAGL+FLS MAS +A  +++   +G  P   I++T  V+LGLATAALG AL+  GRL+L   VS LP+PV+GGYLAFIGYFCL+AGV +CA+  + T SDW +++  +++ LV P L+ G V +
Sbjct:  197 LTKLALLSSMVHQLSFSFCSTLPFAIGQVQDAGLLFLSAMASDIADHVSSMTLEGTDPTPAIISTAVVLLGLATAALGAALMAAGRLRLADAVSYLPLPVVGGYLAFIGYFCLQAGVGLCASEDMVTVSDWGKVVNVRDVGLVLPGLIGGVVMT 350          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A7S2P0D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P0D7_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.110e-41
Identity = 83/148 (56.08%), Postives = 112/148 (75.68%), Query Frame = 3
Query:  201 YMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALV 644
            +MA L+KLV+FSS +HQ++F++FSSL FAIG VQDAGLIFLS MA+ +A ++   G   + +++TT VVL L TAALG+ L+++G+ +L   VS LPMPVIGGYLAFIGYFCLEAGV +C   ++TT SDW  +L  ++L L  P L+
Sbjct:   78 HMAELAKLVIFSSFVHQLTFTLFSSLSFAIGTVQDAGLIFLSAMANTIANEIINDGGTIEEVISTTLVVLPLGTAALGLVLMLLGKFRLLDIVSYLPMPVIGGYLAFIGYFCLEAGVALCIGKSMTTISDWAYLLEPRSLLLATPGLL 225          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: B7FRQ0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRQ0_PHATC)

HSP 1 Score: 160 bits (405), Expect = 1.150e-41
Identity = 82/151 (54.30%), Postives = 114/151 (75.50%), Query Frame = 3
Query:  198 EYMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCG 650
            ++M  LSKLV+FSS++HQ+ F +FSSLPFAIG VQDAGLIFLS M++ VA+++ A G   + +V+TT V+L ++TA LG+ALV +G+ +L   VS LPMPV+GGYLAFIGYFCL+AGV +C +  +   +DW  +L ++N+ L AP L  G
Sbjct:  162 DHMNALSKLVIFSSLMHQLGFCLFSSLPFAIGTVQDAGLIFLSAMSNIVAKEILANGGTVEEVVSTTLVILAMSTACLGLALVAMGKFRLADIVSYLPMPVVGGYLAFIGYFCLQAGVALCISEPMVGLADWRYLLESQNVLLAAPGLGAG 312          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A835ZH57_9STRA (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH57_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.690e-40
Identity = 85/154 (55.19%), Postives = 110/154 (71.43%), Query Frame = 3
Query:  201 YMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCGGVFS 662
            YM  LSKLV+FSS +HQ+ FS+ S+LPFAIGQVQDAGLIFLS +   +A  L  Q E  + +V+T   V  + TA+LGV LVVIG+L+L R+VS LPMPV+GGYLA+IG+FCL+AG+++ A  A  T  DW Q    K L L  P ++ GG+FS
Sbjct:   95 YMPALSKLVLFSSAVHQLCFSLLSTLPFAIGQVQDAGLIFLSKITYIIALRL--QDEPAEVVVSTAVAVTAVCTASLGVCLVVIGKLRLARFVSYLPMPVVGGYLAYIGFFCLQAGLSLSAGKAFETLQDWAQFADPKLLLLCLPGVLAGGLFS 246          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A7S4IFX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IFX6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.940e-40
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 3
Query:  198 EYMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCG 650
            + M  L KLV+FSS +HQ+ F++FSSLPFAIG VQDAGLIFLS M++ +A+D+   G   + +V+TT V+L L TAALG+ LVV+G+ +L   VS LPMPV+GGYLAFIGYFCL AGV +C + ++    DW  +    NL L  P L  G
Sbjct:   38 DRMNALPKLVIFSSCMHQLGFTLFSSLPFAIGTVQDAGLIFLSAMSNIIAEDILNSGGTAEEVVSTTLVLLPLGTAALGLVLVVMGKFRLADAVSYLPMPVVGGYLAFIGYFCLMAGVALCISESMMELKDWAYLFDPHNLLLAVPGLGAG 188          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A2D4C0B0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0B0_PYTIN)

HSP 1 Score: 152 bits (383), Expect = 1.020e-38
Identity = 80/153 (52.29%), Postives = 109/153 (71.24%), Query Frame = 3
Query:  201 YMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAA---QGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCG 650
            YM+ L KLV+ S+ +HQ+ F++ SSLPFA+GQVQDAGLIFLS MAS V Q L     Q    + ++ATT   L  +TA LGVAL++ G+L++  +V  LPMPV+GGYLAFIG++CLEAG+++ AN  I  PSDW Q+   ++L LV P ++ G
Sbjct:  139 YMSDLIKLVLTSAAVHQLCFTVSSSLPFAVGQVQDAGLIFLSAMASSVVQGLREHPHQHFSMEEVIATTLFTLAASTALLGVALIITGKLRIASFVQYLPMPVVGGYLAFIGFYCLEAGLSMMANKTIKDPSDWAQLANAESLLLVTPGVIAG 291          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: B5YMS3_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMS3_THAPS)

HSP 1 Score: 150 bits (380), Expect = 2.890e-38
Identity = 80/148 (54.05%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  201 YMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALV 644
            +MA LSKLV+FSS++HQ +F+MFSSL FAIG VQDAGLIFLS MA+++A  +  +G     +V+T   +L L TA+LG+ L+++G+ +L   VS LPMPVIGGYLAFIGYFCLEAGV +C + ++T  +DW  +L    L L  P L+
Sbjct: 1038 HMAALSKLVIFSSLVHQFAFTMFSSLDFAIGTVQDAGLIFLSVMANRIANKILDEGGTVDEVVSTAVCILPLGTASLGLVLILLGKFRLLDIVSYLPMPVIGGYLAFIGYFCLEAGVALCISKSMTKLTDWGYLLDPHLLLLATPGLL 1185          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: K0TRH0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TRH0_THAOC)

HSP 1 Score: 149 bits (376), Expect = 6.180e-38
Identity = 81/147 (55.10%), Postives = 105/147 (71.43%), Query Frame = 3
Query:  204 MAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALV 644
            +A LSKLVVFSS++HQ+ F++FSSL FAIG VQDAGLIFLS M++++A  + + G     +V+TT VVL L TAALG+ L+ +G+ KL   VS LPMPVIGGYLAFIGYFC EAGV +C    +T    W  +L  ++L L  P L+
Sbjct:  116 IAKLSKLVVFSSLVHQLCFTIFSSLNFAIGTVQDAGLIFLSAMSNQIADSILSGGGTIDEVVSTTLVVLPLGTAALGIVLIFLGKFKLLDIVSYLPMPVIGGYLAFIGYFCFEAGVALCIGKPMTELKHWAYLLEPQSLLLATPGLL 262          
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Match: A0A7S3LAJ8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAJ8_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.540e-38
Identity = 80/148 (54.05%), Postives = 103/148 (69.59%), Query Frame = 3
Query:  201 YMAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQDLAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVIGGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALV 644
            +M  L+KLV+FSSM+HQI F  FSSL FAIG VQDAGLIFLS MA+ +A  +  +GE  + IV+TT  +L   TA LGV LV++G  KL   VS LPMPV+GGYLAFIGYFC +AGV +C + ++ + SDW  +   + L L  P L+
Sbjct:  124 HMNALAKLVLFSSMMHQIGFLFFSSLDFAIGTVQDAGLIFLSSMANTIAARMQDEGESEEAIVSTTLALLSSGTALLGVILVIMGHFKLANAVSYLPMPVVGGYLAFIGYFCCQAGVALCISKSLVSVSDWSYLAEPRYLLLATPGLL 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9YCC1_9STRA2.390e-4356.21Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1BZH2_9STRA2.640e-4255.19Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2P0D7_9STRA1.110e-4156.08Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B7FRQ0_PHATC1.150e-4154.30Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A835ZH57_9STRA2.690e-4055.19Cyclic nucleotide-binding domain-containing protei... [more]
A0A7S4IFX6_9STRA9.940e-4053.64Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A2D4C0B0_PYTIN1.020e-3852.29Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
B5YMS3_THAPS2.890e-3854.05Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
K0TRH0_THAOC6.180e-3855.10Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3LAJ8_9STRA6.540e-3854.05Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:399017..399771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2850.Phatr42556
PFAMsSTAS,Sulfate_transp
Model size662
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue2.76e-42
EggNOG OGsCOG0659@1|root,KOG0236@2759|Eukaryota,2XAE7@2836|Bacillariophyta
DescriptionSTAS domain
Cds size459
COG categoryP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.5624177-CDS-H-akashiwo_Contig125:399016..3994751681387132.5624177-CDS-H-akashiwo_Contig125:399016..399475Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 399017..399475 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.5806825-UTR-H-akashiwo_Contig125:399475..3994791681387132.5806825-UTR-H-akashiwo_Contig125:399475..399479Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig125 399476..399479 -
1681387132.5954528-UTR-H-akashiwo_Contig125:399572..3997711681387132.5954528-UTR-H-akashiwo_Contig125:399572..399771Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig125 399573..399771 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.18.1prot_H-akashiwo_Contig125.18.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 399017..399475 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.18.1

>prot_H-akashiwo_Contig125.18.1 ID=prot_H-akashiwo_Contig125.18.1|Name=mRNA_H-akashiwo_Contig125.18.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=153bp
MAPLSKLVVFSSMIHQISFSMFSSLPFAIGQVQDAGLIFLSHMASKVAQD
LAAQGEGPKTIVATTTVVLGLATAALGVALVVIGRLKLGRYVSLLPMPVI
GGYLAFIGYFCLEAGVTICANTAITTPSDWLQILTTKNLSLVAPALVCGG
VFS
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mRNA from alignment at H-akashiwo_Contig125:399017..399771-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.18.1 ID=mRNA_H-akashiwo_Contig125.18.1|Name=mRNA_H-akashiwo_Contig125.18.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=755bp|location=Sequence derived from alignment at H-akashiwo_Contig125:399017..399771- (Heterosigma akashiwo CCMP452)
CTCCGTGGTGGGTCATAAGTGAGCTTTAATCATGGCCAAAATGCAGTTTC ACCCTTCCATTTTGGTTCTGGGCTTGCTGTATGGGATTGTCCAGTTTGTT TTGAACGTCCCTGCTCTTTACGGATACGCTGCAGTGATTTTCTTGGACGA TACTTACATCCCGTAAGAAACCTTTCATTTGTCGCTTGTACTGATTTGAG CCGGTGACTGATATACCATCACTACCGTGAAAGTTCACTCGCGCTCGACT CTGTTTTCACTCTGTTGTCTGTTTTCTCCTTTCTTATCACAGGTACATGG CCCCACTGAGCAAGTTGGTGGTCTTCAGCAGTATGATTCACCAAATTTCC TTTTCAATGTTTTCATCACTTCCTTTTGCGATTGGCCAAGTCCAAGATGC AGGCCTCATCTTTTTGAGCCATATGGCATCCAAAGTGGCCCAGGATTTGG CTGCCCAAGGAGAAGGTCCCAAAACAATTGTAGCAACGACCACAGTGGTA TTAGGGTTGGCCACAGCTGCACTAGGGGTGGCCCTTGTTGTGATTGGGAG ACTAAAGCTTGGTCGCTACGTATCATTACTGCCAATGCCTGTGATTGGCG GGTACTTGGCCTTCATCGGCTATTTTTGCTTAGAGGCAGGGGTAACCATC TGTGCCAACACTGCCATCACCACCCCAAGCGACTGGCTTCAGATCCTCAC CACCAAGAACCTAAGCCTGGTGGCGCCCGCGCTGGTCTGCGGTGGGGTCT TCTCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:399017..399771-

>mRNA_H-akashiwo_Contig125.18.1 ID=mRNA_H-akashiwo_Contig125.18.1|Name=mRNA_H-akashiwo_Contig125.18.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=459bp|location=Sequence derived from alignment at H-akashiwo_Contig125:399017..399771- (Heterosigma akashiwo CCMP452)
ATGGCCCCACTGAGCAAGTTGGTGGTCTTCAGCAGTATGATTCACCAAAT
TTCCTTTTCAATGTTTTCATCACTTCCTTTTGCGATTGGCCAAGTCCAAG
ATGCAGGCCTCATCTTTTTGAGCCATATGGCATCCAAAGTGGCCCAGGAT
TTGGCTGCCCAAGGAGAAGGTCCCAAAACAATTGTAGCAACGACCACAGT
GGTATTAGGGTTGGCCACAGCTGCACTAGGGGTGGCCCTTGTTGTGATTG
GGAGACTAAAGCTTGGTCGCTACGTATCATTACTGCCAATGCCTGTGATT
GGCGGGTACTTGGCCTTCATCGGCTATTTTTGCTTAGAGGCAGGGGTAAC
CATCTGTGCCAACACTGCCATCACCACCCCAAGCGACTGGCTTCAGATCC
TCACCACCAAGAACCTAAGCCTGGTGGCGCCCGCGCTGGTCTGCGGTGGG
GTCTTCTCG
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