mRNA_H-akashiwo_Contig125.17.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.17.1
Unique NamemRNA_H-akashiwo_Contig125.17.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig125.17.1 vs. uniprot
Match: A0A7S3XM01_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM01_HETAK)

HSP 1 Score: 110 bits (274), Expect = 2.050e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 LALSGGSLADARAYGFVGEASGGVTYAEAFKLYDFALVRWDVVPGLALTWVGML 162
            LALSGGSLADARAYGFVGEASGGVTYAEAFKLYDFALVRWDVVPGLALTWVGML
Sbjct:   29 LALSGGSLADARAYGFVGEASGGVTYAEAFKLYDFALVRWDVVPGLALTWVGML 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XM01_HETAK2.050e-28100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:388621..389279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_02824T0
PFAMsSTAS,Sulfate_transp,cNMP_binding
Model size165
Max annot lvl4776|Peronosporales
KEGG koko:K03321
KEGG TC2.A.53.3
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue2.75e-06
EggNOG OGsCOG0659@1|root,KOG0236@2759|Eukaryota,3QDEB@4776|Peronosporales
DescriptionSTAS domain
Cds size162
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.5010414-CDS-H-akashiwo_Contig125:388621..3887391681387132.5010414-CDS-H-akashiwo_Contig125:388621..388739Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 388622..388739 -
1681387132.51259-CDS-H-akashiwo_Contig125:389235..3892791681387132.51259-CDS-H-akashiwo_Contig125:389235..389279Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 389236..389279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.17.1prot_H-akashiwo_Contig125.17.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 388622..389279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.17.1

>prot_H-akashiwo_Contig125.17.1 ID=prot_H-akashiwo_Contig125.17.1|Name=mRNA_H-akashiwo_Contig125.17.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
LALSGGSLADARAYGFVGEASGGVTYAEAFKLYDFALVRWDVVPGLALTW
VGML
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mRNA from alignment at H-akashiwo_Contig125:388621..389279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.17.1 ID=mRNA_H-akashiwo_Contig125.17.1|Name=mRNA_H-akashiwo_Contig125.17.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=659bp|location=Sequence derived from alignment at H-akashiwo_Contig125:388621..389279- (Heterosigma akashiwo CCMP452)
CTGGCCCTGTCCGGGGGCAGCCTGGCCGACGCGCGGGCGTACGGGTGCGT
TCGTAAGATTGTGGATGTTGTAGTTGTTTGTAGTCTTCCGGTCGCTTTTG
TACACATCCAAATTATTTTCATATGATTCATACATATATTTGACATGATC
AGTGATAGAGATTTTCCCTACTGATCAGCCCACTCCACCACCCTTGAAGA
AATTTGCTCCGGGTGATTGATAGATACGGTATAAAATGACATCATCTTTT
TTTTCCCTGTAGTTTCGAATCCTCGTCCTTCTTCTGTAAAGTTTCGGCGG
GGAATAAGATACAACGATTATGCTCGGGACAAAGTCCGGGTACAATCAAG
AAAAAGAGGGAGAAGTGTAAAGATGGGGGTGCACGGGGAAGAAGAGGAGC
TTTTAATGACTTCGGGGGGGGGTTCAGAATCGGAAAATATTTGATGATGT
ACGGCCGCCCTTTGATGATGCCTTTTTACATACCATGCATGACTCCTAAT
GTCCACCCCCCCTCCCACCGGGACCCATCGAATCCCCCAGGTTCGTGGGC
GAGGCCTCCGGGGGGGTGACCTACGCCGAGGCGTTCAAGCTGTATGACTT
CGCCCTCGTGCGCTGGGACGTGGTGCCCGGCCTCGCGCTCACCTGGGTCG
GCATGCTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:388621..389279-

>mRNA_H-akashiwo_Contig125.17.1 ID=mRNA_H-akashiwo_Contig125.17.1|Name=mRNA_H-akashiwo_Contig125.17.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig125:388621..389279- (Heterosigma akashiwo CCMP452)
CTGGCCCTGTCCGGGGGCAGCCTGGCCGACGCGCGGGCGTACGGGTTCGT
GGGCGAGGCCTCCGGGGGGGTGACCTACGCCGAGGCGTTCAAGCTGTATG
ACTTCGCCCTCGTGCGCTGGGACGTGGTGCCCGGCCTCGCGCTCACCTGG
GTCGGCATGCTG
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