mRNA_H-akashiwo_Contig125.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig125.16.1
Unique NamemRNA_H-akashiwo_Contig125.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A7S3XM01_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM01_HETAK)

HSP 1 Score: 146 bits (368), Expect = 3.230e-42
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 VVCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIGWTLA 213
            VVCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIGWTLA
Sbjct:   83 VVCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIGWTLA 153
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BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A024U1P7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1P7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.420e-21
Identity = 43/66 (65.15%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            V AFGS LDVAAIEMD+G+ L +NHELT+VG+ N  SGLLGG+TGSYIFS T+F YR++ ++ V+G
Sbjct:  352 VVAFGSCLDVAAIEMDMGQKLDLNHELTSVGWSNFVSGLLGGYTGSYIFSQTIFTYRSKTNSRVVG 417
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BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A3L6VGX6_9STRA (Sulfate_transp domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VGX6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 8.180e-21
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            V AFGS LDVAAIEMD+G+ L +NHEL +VG+ N+ SGLLGG+TGSYIFS T+F YR++ ++ V+G
Sbjct:  245 VVAFGSCLDVAAIEMDMGQKLDLNHELASVGWSNVVSGLLGGYTGSYIFSQTIFTYRSKTNSRVVG 310
[Close]
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A2P4XC04_9STRA (Sulfate_transp domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XC04_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.610e-21
Identity = 38/66 (57.58%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            + AFGS LD+AAIE+D+G  L  NHEL T+G+ N+ SGLLGG TGSYIFS T+ NYR+++++ ++G
Sbjct:   56 IVAFGSCLDIAAIELDMGTKLDFNHELKTIGWSNVVSGLLGGCTGSYIFSLTILNYRSKINSRIVG 121
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BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A6G0XHI6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XHI6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.760e-21
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            V AFGS LDVAAIEMD+G+ L +NHELT+VG+ N  SGLLGG+TGSYIFS T+F YR++ ++ ++G
Sbjct:  332 VVAFGSCLDVAAIEMDMGQKLDLNHELTSVGWSNFVSGLLGGYTGSYIFSQTIFTYRSKTNSRIVG 397
[Close]
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A485L9H2_9STRA (Aste57867_17450 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9H2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 8.770e-21
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            V AFGS LDVAAIEMD+G+ L +NHELT+VG+ N  SGLLGG+TGSYIFS T+F YR++ ++ ++G
Sbjct:  387 VVAFGSCLDVAAIEMDMGQKLDLNHELTSVGWSNFVSGLLGGYTGSYIFSQTIFTYRSKTNSRIVG 452
[Close]
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A6A3PCS2_9STRA (Sulfate_transp domain-containing protein (Fragment) n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PCS2_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 9.180e-21
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            + AF S LD+AAIE+D+G+ L  NHEL TVG+ N+ SGLLGG+TGSYIFS T+F YR++ +T ++G
Sbjct:  154 IVAFSSCLDIAAIELDMGKKLDFNHELKTVGWSNVVSGLLGGYTGSYIFSQTIFTYRSKTNTRIVG 219
[Close]
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: W4GJU4_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GJU4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-20
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            V AFGS LDVAAIEMD+G+ L +NHEL +VG+ N+ SGLLGG+TGSYIFS T+F YR++ ++ V+G
Sbjct:  343 VVAFGSCLDVAAIEMDMGQKLDLNHELASVGWSNVVSGLLGGYTGSYIFSQTIFTYRSKTNSRVVG 408
[Close]
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A5D6Y9G9_9STRA (Sulfate_transp domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9G9_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.940e-20
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            V +F S LDVAAIEMD+GR L INHEL +VG+ N+ SGLLGG+TGSYIFS T+F YR++ ++ V+G
Sbjct:  330 VVSFSSCLDVAAIEMDMGRQLDINHELASVGWSNVVSGLLGGYTGSYIFSQTIFTYRSKTNSRVVG 395
[Close]
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Match: A0A8J4RVM8_9STRA (Sulfate_transp domain-containing protein n=1 Tax=Phytophthora kernoviae 00238/432 TaxID=1284355 RepID=A0A8J4RVM8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 4.060e-20
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    4 VCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIFSSTVFNYRTRLHTHVIG 201
            + AF SSLDV AIE+D+G  LRINHEL TVG+ N+ SGLLGG+TGSYIFS T+F  R++ ++ ++G
Sbjct:   52 IVAFSSSLDVVAIEIDMGSKLRINHELETVGWSNVVSGLLGGYTGSYIFSQTIFTCRSKTNSRIVG 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XM01_HETAK3.230e-42100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024U1P7_9STRA6.420e-2165.15Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A3L6VGX6_9STRA8.180e-2163.64Sulfate_transp domain-containing protein (Fragment... [more]
A0A2P4XC04_9STRA8.610e-2157.58Sulfate_transp domain-containing protein (Fragment... [more]
A0A6G0XHI6_9STRA8.760e-2163.64Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485L9H2_9STRA8.770e-2163.64Aste57867_17450 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3PCS2_9STRA9.180e-2159.09Sulfate_transp domain-containing protein (Fragment... [more]
W4GJU4_9STRA1.200e-2063.64Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
A0A5D6Y9G9_9STRA2.940e-2063.64Sulfate_transp domain-containing protein (Fragment... [more]
A0A8J4RVM8_9STRA4.060e-2060.61Sulfate_transp domain-containing protein n=1 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:386677..387900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008871170.1
PFAMsSTAS,Sulfate_transp,cNMP_binding
Model size214
Max annot lvl2759|Eukaryota
KEGG koko:K03321
KEGG TC2.A.53.3
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.05e-21
EggNOG OGsCOG0659@1|root,KOG0236@2759|Eukaryota
Descriptionsecondary active sulfate transmembrane transporter activity
Cds size213
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387132.4453695-CDS-H-akashiwo_Contig125:386677..3867771681387132.4453695-CDS-H-akashiwo_Contig125:386677..386777Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 386678..386777 -
1681387132.4585426-CDS-H-akashiwo_Contig125:387787..3879001681387132.4585426-CDS-H-akashiwo_Contig125:387787..387900Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig125 387788..387900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.16.1prot_H-akashiwo_Contig125.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig125 386678..387900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig125.16.1

>prot_H-akashiwo_Contig125.16.1 ID=prot_H-akashiwo_Contig125.16.1|Name=mRNA_H-akashiwo_Contig125.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=71bp
VVCAFGSSLDVAAIEMDLGRPLRINHELTTVGFGNIASGLLGGFTGSYIF
SSTVFNYRTRLHTHVIGWTLA
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mRNA from alignment at H-akashiwo_Contig125:386677..387900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig125.16.1 ID=mRNA_H-akashiwo_Contig125.16.1|Name=mRNA_H-akashiwo_Contig125.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-akashiwo_Contig125:386677..387900- (Heterosigma akashiwo CCMP452)
GTGGTCTGCGCCTTCGGCTCGAGCCTGGACGTGGCCGCCATCGAGATGGA
CCTGGGCCGGCCGCTGCGCATCAACCACGAGCTCACCACCGTCGGCTTCG
GCAACATCGCCAGGTGGGGCGGGGCGCCCGCCGCCCGCCCGCCCGCCCGC
CCGCCCCCCTCCTCCTTTTTCCGGCCGCGGGCCGGGCGCACTGCTGGGCT
TGGCTTCAGGAACGCTGCTGCTGCTTCTTGTTGCTGGGTTCGTCGAATCC
CGCATCATTTTATACGGCCGACAACCGTTTTAGATTGATTATGAACGGGG
AACAGCTTCAACTTTTTTTTTTTTTTTTTTTTAATTTTTTGGCAATATTT
TTCGTATTTTATTTTTTATATGAAGATTTTCTTTTTTTGATCTCAAGTCG
GTGTCAGGCTAAAGTGTGCAAGGATTTGGCCAAATCCCCCGAAAGAAAAA
CACGTTCTACAGGTTGGAACATCCGGGAAAATAGCTCAAAATGTAGCCTG
CTATGCAGGCTTCATTTTCAGCTATATTTTTCCCGGATGTTCCGAGGCGA
ACTTATTGCGATCTATATTTTAGACGAGGAGGCAGTTTAGATTTTGGGTT
GAAGCGCATATTTTTTAAATCGTTGGAAGGTACGCAAGCGCAAATTGCCG
AATGGGTAAGGCTCACGGCTTGATTTTTGGGTCTGATCCGGGTTCAAATC
CCGGCGCGTGCCCGCGACAACGATTTGGCCGAATTTCCCATAGAGGGATG
TCCCCTTAAGCCTGACACCGACTCTCAATAGTGCAAAAGCTCTTTTTATC
TGTTTGGGGTTTTACAAGGAAAAGTTTATCGTGAAGAAGTGACCAAATTA
CATGGAGAATCGACCCGCCCACCTTACCTTCCACCAAGACCGCAATATGA
GTGCACGCTCATACTGGACACAGAGAAGCAGCTATGGCCAGGGAAGACAA
AGGAGGCTCTTTTTATCCGAGCAGCAAACCCTGGTAAGAAGATGACACAG
CTCATGAATCTTGACGGGGCCATTCCAGAGCGAGCTCAGGCGCAGGATGG
AATGGGTGTGGAGAAAGAACCCCAGACCCTAGAGATCCTTCGTGAGCAGC
CAACCTCCCTCCCAGCGACGCAGCGGGCTGCTGGGCGGGTTCACCGGCAG
CTACATCTTCAGCTCCACGGTGTTCAACTACCGCACGCGGCTGCACACGC
ACGTCATCGGGTGGACGCTCGCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig125:386677..387900-

>mRNA_H-akashiwo_Contig125.16.1 ID=mRNA_H-akashiwo_Contig125.16.1|Name=mRNA_H-akashiwo_Contig125.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=213bp|location=Sequence derived from alignment at H-akashiwo_Contig125:386677..387900- (Heterosigma akashiwo CCMP452)
GTGGTCTGCGCCTTCGGCTCGAGCCTGGACGTGGCCGCCATCGAGATGGA
CCTGGGCCGGCCGCTGCGCATCAACCACGAGCTCACCACCGTCGGCTTCG
GCAACATCGCCAGCGGGCTGCTGGGCGGGTTCACCGGCAGCTACATCTTC
AGCTCCACGGTGTTCAACTACCGCACGCGGCTGCACACGCACGTCATCGG
GTGGACGCTCGCC
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